data_4KY4
#
_model_server_result.job_id            BL4lg2c346Wd6V2fAUynzg 
_model_server_result.datetime_utc      '2024-10-28 19:36:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ky4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"DA","auth_seq_id":702}' 
#
_entry.id    4KY4 
#
_exptl.entry_id    4KY4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              440.413 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Aminopterin 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         89.97 
_cell.angle_beta          89.95 
_cell.angle_gamma         89.89 
_cell.entry_id            4KY4 
_cell.length_a            53.539 
_cell.length_b            145.122 
_cell.length_c            176.159 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4KY4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,J,K,L,M,N,O,P 1 1 
C,D,Q,R,S,T,U,V,W,X 2 1 
E,F,Y,Z,AA,BA,CA,DA,EA,FA 3 1 
G,H,GA,HA,IA,JA,KA,LA,MA,NA 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 J N N 
? 3 N N N 
? 3 R N N 
? 3 V N N 
? 3 Z N N 
? 3 DA N N 
? 3 HA N N 
? 3 LA N N 
#
_chem_comp.formula           'C19 H20 N8 O5' 
_chem_comp.formula_weight    440.413 
_chem_comp.id                04J 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              Aminopterin 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'N-(4-{[(2,4-diaminopteridin-6-yl)methyl]amino}benzoyl)-L-glutamic acid' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C 04J sing 1 n n 
C11 C 04J sing 2 n n 
C O 04J doub 3 n n 
N CA 04J sing 4 n n 
N HN 04J sing 5 n n 
C2 N1 04J doub 6 n y 
N1 C8A 04J sing 7 n y 
O1 CT 04J doub 8 n n 
NA2 C2 04J sing 9 n n 
C2 N3 04J sing 10 n y 
CT O2 04J sing 11 n n 
O2 HO2 04J sing 12 n n 
N3 C4 04J doub 13 n y 
C4 NA4 04J sing 14 n n 
C4 C4A 04J sing 15 n y 
C4A N5 04J sing 16 n y 
N5 C6 04J doub 17 n y 
C7 C6 04J sing 18 n y 
C6 C9 04J sing 19 n n 
N8 C7 04J doub 20 n y 
C7 H7 04J sing 21 n n 
C8A N8 04J sing 22 n y 
C9 N10 04J sing 23 n n 
C9 H9 04J sing 24 n n 
C9 H9A 04J sing 25 n n 
CB CA 04J sing 26 n n 
CA CT 04J sing 27 n n 
CA HA 04J sing 28 n n 
CB CG 04J sing 29 n n 
CB HB 04J sing 30 n n 
CB HBA 04J sing 31 n n 
OE1 CD 04J doub 32 n n 
CD CG 04J sing 33 n n 
CD OE2 04J sing 34 n n 
CG HG 04J sing 35 n n 
CG HGA 04J sing 36 n n 
N10 C14 04J sing 37 n n 
N10 HN10 04J sing 38 n n 
C16 C11 04J doub 39 n y 
C12 C11 04J sing 40 n y 
C13 C12 04J doub 41 n y 
C12 H12 04J sing 42 n n 
C14 C13 04J sing 43 n y 
C13 H13 04J sing 44 n n 
C14 C15 04J doub 45 n y 
C15 C16 04J sing 46 n y 
C15 H15 04J sing 47 n n 
C16 H16 04J sing 48 n n 
C8A C4A 04J doub 49 n y 
NA2 HNA2 04J sing 50 n n 
NA2 HNAA 04J sing 51 n n 
NA4 HNA4 04J sing 52 n n 
NA4 HNAB 04J sing 53 n n 
OE2 HOE2 04J sing 54 n n 
#
_atom_sites.entry_id                     4KY4 
_atom_sites.fract_transf_matrix[1][1]    0.018678 
_atom_sites.fract_transf_matrix[1][2]    -0.000035 
_atom_sites.fract_transf_matrix[1][3]    -0.000017 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006891 
_atom_sites.fract_transf_matrix[2][3]    -0.000003 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005677 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 UMP A 1 701 703 UMP UMP . 
J 3 04J A 1 702 705 04J MTX . 
K 4 NDP A 1 703 706 NDP NDP . 
L 5 1UE A 1 704 707 1UE CP2 . 
M 2 UMP B 1 701 703 UMP UMP . 
N 3 04J B 1 702 705 04J MTX . 
O 4 NDP B 1 703 706 NDP NDP . 
P 5 1UE B 1 704 707 1UE CP2 . 
Q 2 UMP C 1 701 703 UMP UMP . 
R 3 04J C 1 702 705 04J MTX . 
S 4 NDP C 1 703 706 NDP NDP . 
T 5 1UE C 1 704 707 1UE CP2 . 
U 2 UMP D 1 701 703 UMP UMP . 
V 3 04J D 1 702 705 04J MTX . 
W 4 NDP D 1 703 706 NDP NDP . 
X 5 1UE D 1 704 707 1UE CP2 . 
Y 2 UMP E 1 701 703 UMP UMP . 
Z 3 04J E 1 702 705 04J MTX . 
AA 4 NDP E 1 703 706 NDP NDP . 
BA 5 1UE E 1 704 707 1UE CP2 . 
CA 2 UMP F 1 701 703 UMP UMP . 
DA 3 04J F 1 702 705 04J MTX . 
EA 4 NDP F 1 703 706 NDP NDP . 
FA 5 1UE F 1 704 707 1UE CP2 . 
GA 2 UMP G 1 701 703 UMP UMP . 
HA 3 04J G 1 702 705 04J MTX . 
IA 4 NDP G 1 703 706 NDP NDP . 
JA 5 1UE G 1 704 707 1UE CP2 . 
KA 2 UMP H 1 701 703 UMP UMP . 
LA 3 04J H 1 702 705 04J MTX . 
MA 4 NDP H 1 703 706 NDP NDP . 
NA 5 1UE H 1 704 707 1UE CP2 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C 04J . . . DA 3 36.27 -23.458 -99.462 1 137.38 ? C 04J 702 F 1 
HETATM 2 N N 04J . . . DA 3 35.639 -22.27 -99.566 1 151.1 ? N 04J 702 F 1 
HETATM 3 O O 04J . . . DA 3 37.38 -23.636 -98.969 1 138.78 ? O 04J 702 F 1 
HETATM 4 N N1 04J . . . DA 3 28.009 -24.584 -103.276 1 95.96 ? N1 04J 702 F 1 
HETATM 5 O O1 04J . . . DA 3 35.826 -20.47 -96.78 1 142.52 ? O1 04J 702 F 1 
HETATM 6 C C2 04J . . . DA 3 28.236 -23.811 -104.335 1 99.01 ? C2 04J 702 F 1 
HETATM 7 O O2 04J . . . DA 3 34.08 -20.231 -98.124 1 115.3 ? O2 04J 702 F 1 
HETATM 8 N N3 04J . . . DA 3 29.411 -23.804 -104.956 1 107.61 ? N3 04J 702 F 1 
HETATM 9 C C4 04J . . . DA 3 30.392 -24.586 -104.527 1 111.54 ? C4 04J 702 F 1 
HETATM 10 N N5 04J . . . DA 3 31.218 -26.185 -103.024 1 113.64 ? N5 04J 702 F 1 
HETATM 11 C C6 04J . . . DA 3 31.04 -26.975 -101.96 1 125.55 ? C6 04J 702 F 1 
HETATM 12 C C7 04J . . . DA 3 29.802 -26.968 -101.33 1 136.16 ? C7 04J 702 F 1 
HETATM 13 N N8 04J . . . DA 3 28.755 -26.152 -101.771 1 116.02 ? N8 04J 702 F 1 
HETATM 14 C C9 04J . . . DA 3 32.026 -27.834 -101.456 1 125.04 ? C9 04J 702 F 1 
HETATM 15 C CA 04J . . . DA 3 36.123 -20.966 -99.084 1 153.8 ? CA 04J 702 F 1 
HETATM 16 C CB 04J . . . DA 3 35.928 -19.947 -100.213 1 157.2 ? CB 04J 702 F 1 
HETATM 17 C CD 04J . . . DA 3 36.994 -17.779 -100.86 1 145.4 ? CD 04J 702 F 1 
HETATM 18 C CG 04J . . . DA 3 37.242 -19.272 -100.619 1 152.78 ? CG 04J 702 F 1 
HETATM 19 C CT 04J . . . DA 3 35.272 -20.52 -97.894 1 144.53 ? CT 04J 702 F 1 
HETATM 20 N N10 04J . . . DA 3 33.408 -27.494 -101.829 1 122.71 ? N10 04J 702 F 1 
HETATM 21 C C11 04J . . . DA 3 35.566 -24.497 -100.049 1 127.13 ? C11 04J 702 F 1 
HETATM 22 C C12 04J . . . DA 3 34.196 -24.563 -99.889 1 120.96 ? C12 04J 702 F 1 
HETATM 23 C C13 04J . . . DA 3 33.469 -25.574 -100.482 1 123.06 ? C13 04J 702 F 1 
HETATM 24 C C14 04J . . . DA 3 34.105 -26.53 -101.243 1 121.64 ? C14 04J 702 F 1 
HETATM 25 C C15 04J . . . DA 3 35.475 -26.461 -101.413 1 117.44 ? C15 04J 702 F 1 
HETATM 26 C C16 04J . . . DA 3 36.209 -25.444 -100.823 1 116.68 ? C16 04J 702 F 1 
HETATM 27 C C4A 04J . . . DA 3 30.212 -25.401 -103.444 1 111.55 ? C4A 04J 702 F 1 
HETATM 28 C C8A 04J . . . DA 3 28.976 -25.376 -102.823 1 109.39 ? C8A 04J 702 F 1 
HETATM 29 N NA2 04J . . . DA 3 27.276 -23.034 -104.779 1 108.33 ? NA2 04J 702 F 1 
HETATM 30 N NA4 04J . . . DA 3 31.582 -24.632 -105.093 1 120.7 ? NA4 04J 702 F 1 
HETATM 31 O OE1 04J . . . DA 3 37.309 -17.308 -101.974 1 132.6 ? OE1 04J 702 F 1 
HETATM 32 O OE2 04J . . . DA 3 36.5 -17.138 -99.914 1 140.98 ? OE2 04J 702 F 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           68 
_model_server_stats.create_model_time_ms    322 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           32 
#