data_4KY4
#
_model_server_result.job_id            yyR-21lykY9PDVYg44QHAg 
_model_server_result.datetime_utc      '2024-10-28 19:23:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ky4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":703}' 
#
_entry.id    4KY4 
#
_exptl.entry_id    4KY4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         89.97 
_cell.angle_beta          89.95 
_cell.angle_gamma         89.89 
_cell.entry_id            4KY4 
_cell.length_a            53.539 
_cell.length_b            145.122 
_cell.length_c            176.159 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4KY4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,J,K,L,M,N,O,P 1 1 
C,D,Q,R,S,T,U,V,W,X 2 1 
E,F,Y,Z,AA,BA,CA,DA,EA,FA 3 1 
G,H,GA,HA,IA,JA,KA,LA,MA,NA 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 K N N 
? 4 O N N 
? 4 S N N 
? 4 W N N 
? 4 AA N N 
? 4 EA N N 
? 4 IA N N 
? 4 MA N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 326 n n 
PA O2A NDP sing 327 n n 
PA O5B NDP sing 328 n n 
PA O3 NDP sing 329 n n 
O2A HOA2 NDP sing 330 n n 
O5B C5B NDP sing 331 n n 
C5B C4B NDP sing 332 n n 
C5B H51A NDP sing 333 n n 
C5B H52A NDP sing 334 n n 
C4B O4B NDP sing 335 n n 
C4B C3B NDP sing 336 n n 
C4B H4B NDP sing 337 n n 
O4B C1B NDP sing 338 n n 
C3B O3B NDP sing 339 n n 
C3B C2B NDP sing 340 n n 
C3B H3B NDP sing 341 n n 
O3B HO3A NDP sing 342 n n 
C2B O2B NDP sing 343 n n 
C2B C1B NDP sing 344 n n 
C2B H2B NDP sing 345 n n 
O2B P2B NDP sing 346 n n 
C1B N9A NDP sing 347 n n 
C1B H1B NDP sing 348 n n 
N9A C8A NDP sing 349 n y 
N9A C4A NDP sing 350 n y 
C8A N7A NDP doub 351 n y 
C8A H8A NDP sing 352 n n 
N7A C5A NDP sing 353 n y 
C5A C6A NDP sing 354 n y 
C5A C4A NDP doub 355 n y 
C6A N6A NDP sing 356 n n 
C6A N1A NDP doub 357 n y 
N6A H61A NDP sing 358 n n 
N6A H62A NDP sing 359 n n 
N1A C2A NDP sing 360 n y 
C2A N3A NDP doub 361 n y 
C2A H2A NDP sing 362 n n 
N3A C4A NDP sing 363 n y 
O3 PN NDP sing 364 n n 
PN O1N NDP doub 365 n n 
PN O2N NDP sing 366 n n 
PN O5D NDP sing 367 n n 
O2N H21N NDP sing 368 n n 
O5D C5D NDP sing 369 n n 
C5D C4D NDP sing 370 n n 
C5D H51N NDP sing 371 n n 
C5D H52N NDP sing 372 n n 
C4D O4D NDP sing 373 n n 
C4D C3D NDP sing 374 n n 
C4D H4D NDP sing 375 n n 
O4D C1D NDP sing 376 n n 
C3D O3D NDP sing 377 n n 
C3D C2D NDP sing 378 n n 
C3D H3D NDP sing 379 n n 
O3D HO3N NDP sing 380 n n 
C2D O2D NDP sing 381 n n 
C2D C1D NDP sing 382 n n 
C2D H2D NDP sing 383 n n 
O2D HO2N NDP sing 384 n n 
C1D N1N NDP sing 385 n n 
C1D H1D NDP sing 386 n n 
N1N C2N NDP sing 387 n n 
N1N C6N NDP sing 388 n n 
C2N C3N NDP doub 389 n n 
C2N H2N NDP sing 390 n n 
C3N C7N NDP sing 391 n n 
C3N C4N NDP sing 392 n n 
C7N O7N NDP doub 393 n n 
C7N N7N NDP sing 394 n n 
N7N H71N NDP sing 395 n n 
N7N H72N NDP sing 396 n n 
C4N C5N NDP sing 397 n n 
C4N H41N NDP sing 398 n n 
C4N H42N NDP sing 399 n n 
C5N C6N NDP doub 400 n n 
C5N H5N NDP sing 401 n n 
C6N H6N NDP sing 402 n n 
P2B O1X NDP doub 403 n n 
P2B O2X NDP sing 404 n n 
P2B O3X NDP sing 405 n n 
O2X HOP2 NDP sing 406 n n 
O3X HOP3 NDP sing 407 n n 
#
_atom_sites.entry_id                     4KY4 
_atom_sites.fract_transf_matrix[1][1]    0.018678 
_atom_sites.fract_transf_matrix[1][2]    -0.000035 
_atom_sites.fract_transf_matrix[1][3]    -0.000017 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006891 
_atom_sites.fract_transf_matrix[2][3]    -0.000003 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005677 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 UMP A 1 701 703 UMP UMP . 
J 3 04J A 1 702 705 04J MTX . 
K 4 NDP A 1 703 706 NDP NDP . 
L 5 1UE A 1 704 707 1UE CP2 . 
M 2 UMP B 1 701 703 UMP UMP . 
N 3 04J B 1 702 705 04J MTX . 
O 4 NDP B 1 703 706 NDP NDP . 
P 5 1UE B 1 704 707 1UE CP2 . 
Q 2 UMP C 1 701 703 UMP UMP . 
R 3 04J C 1 702 705 04J MTX . 
S 4 NDP C 1 703 706 NDP NDP . 
T 5 1UE C 1 704 707 1UE CP2 . 
U 2 UMP D 1 701 703 UMP UMP . 
V 3 04J D 1 702 705 04J MTX . 
W 4 NDP D 1 703 706 NDP NDP . 
X 5 1UE D 1 704 707 1UE CP2 . 
Y 2 UMP E 1 701 703 UMP UMP . 
Z 3 04J E 1 702 705 04J MTX . 
AA 4 NDP E 1 703 706 NDP NDP . 
BA 5 1UE E 1 704 707 1UE CP2 . 
CA 2 UMP F 1 701 703 UMP UMP . 
DA 3 04J F 1 702 705 04J MTX . 
EA 4 NDP F 1 703 706 NDP NDP . 
FA 5 1UE F 1 704 707 1UE CP2 . 
GA 2 UMP G 1 701 703 UMP UMP . 
HA 3 04J G 1 702 705 04J MTX . 
IA 4 NDP G 1 703 706 NDP NDP . 
JA 5 1UE G 1 704 707 1UE CP2 . 
KA 2 UMP H 1 701 703 UMP UMP . 
LA 3 04J H 1 702 705 04J MTX . 
MA 4 NDP H 1 703 706 NDP NDP . 
NA 5 1UE H 1 704 707 1UE CP2 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . O 4 -2.256 36.134 -11.105 1 92.58 ? PA NDP 703 B 1 
HETATM 2 O O1A NDP . . . O 4 -0.822 35.774 -11.149 1 95.2 ? O1A NDP 703 B 1 
HETATM 3 O O2A NDP . . . O 4 -3.269 35.088 -10.85 1 81.99 ? O2A NDP 703 B 1 
HETATM 4 O O5B NDP . . . O 4 -2.419 37.144 -9.926 1 108.15 ? O5B NDP 703 B 1 
HETATM 5 C C5B NDP . . . O 4 -1.962 38.454 -10.061 1 113.77 ? C5B NDP 703 B 1 
HETATM 6 C C4B NDP . . . O 4 -2.024 38.932 -8.615 1 119.8 ? C4B NDP 703 B 1 
HETATM 7 O O4B NDP . . . O 4 -1.527 37.909 -7.66 1 114.29 ? O4B NDP 703 B 1 
HETATM 8 C C3B NDP . . . O 4 -1.131 40.141 -8.453 1 120.57 ? C3B NDP 703 B 1 
HETATM 9 O O3B NDP . . . O 4 -1.89 41.329 -8.711 1 108.69 ? O3B NDP 703 B 1 
HETATM 10 C C2B NDP . . . O 4 -0.762 40 -7.002 1 123.96 ? C2B NDP 703 B 1 
HETATM 11 O O2B NDP . . . O 4 -1.902 40.22 -6.175 1 122.66 ? O2B NDP 703 B 1 
HETATM 12 C C1B NDP . . . O 4 -0.452 38.529 -6.904 1 123.33 ? C1B NDP 703 B 1 
HETATM 13 N N9A NDP . . . O 4 0.917 38.191 -7.396 1 122.95 ? N9A NDP 703 B 1 
HETATM 14 C C8A NDP . . . O 4 1.272 37.6 -8.533 1 123.76 ? C8A NDP 703 B 1 
HETATM 15 N N7A NDP . . . O 4 2.596 37.485 -8.539 1 128.54 ? N7A NDP 703 B 1 
HETATM 16 C C5A NDP . . . O 4 3.061 38.004 -7.404 1 126.88 ? C5A NDP 703 B 1 
HETATM 17 C C6A NDP . . . O 4 4.306 38.126 -6.939 1 125.02 ? C6A NDP 703 B 1 
HETATM 18 N N6A NDP . . . O 4 5.27 37.654 -7.735 1 116.07 ? N6A NDP 703 B 1 
HETATM 19 N N1A NDP . . . O 4 4.562 38.693 -5.738 1 126.48 ? N1A NDP 703 B 1 
HETATM 20 C C2A NDP . . . O 4 3.49 39.164 -4.96 1 126.61 ? C2A NDP 703 B 1 
HETATM 21 N N3A NDP . . . O 4 2.191 39.019 -5.473 1 127.07 ? N3A NDP 703 B 1 
HETATM 22 C C4A NDP . . . O 4 2.017 38.441 -6.686 1 127.54 ? C4A NDP 703 B 1 
HETATM 23 O O3 NDP . . . O 4 -2.717 37.09 -12.393 1 103.27 ? O3 NDP 703 B 1 
HETATM 24 P PN NDP . . . O 4 -2.576 36.867 -14.041 1 105.76 ? PN NDP 703 B 1 
HETATM 25 O O1N NDP . . . O 4 -1.129 36.859 -14.32 1 86.54 ? O1N NDP 703 B 1 
HETATM 26 O O2N NDP . . . O 4 -3.463 37.873 -14.688 1 103.73 ? O2N NDP 703 B 1 
HETATM 27 O O5D NDP . . . O 4 -3.182 35.412 -14.394 1 111.14 ? O5D NDP 703 B 1 
HETATM 28 C C5D NDP . . . O 4 -4.58 35.121 -14.244 1 118.26 ? C5D NDP 703 B 1 
HETATM 29 C C4D NDP . . . O 4 -5.082 35.144 -15.666 1 122.71 ? C4D NDP 703 B 1 
HETATM 30 O O4D NDP . . . O 4 -4.488 33.97 -16.272 1 133.21 ? O4D NDP 703 B 1 
HETATM 31 C C3D NDP . . . O 4 -6.595 34.917 -15.739 1 122.54 ? C3D NDP 703 B 1 
HETATM 32 O O3D NDP . . . O 4 -7.078 35.348 -17.035 1 111.93 ? O3D NDP 703 B 1 
HETATM 33 C C2D NDP . . . O 4 -6.689 33.394 -15.531 1 125.68 ? C2D NDP 703 B 1 
HETATM 34 O O2D NDP . . . O 4 -7.885 32.767 -16.033 1 117.01 ? O2D NDP 703 B 1 
HETATM 35 C C1D NDP . . . O 4 -5.533 32.927 -16.364 1 129.72 ? C1D NDP 703 B 1 
HETATM 36 N N1N NDP . . . O 4 -5.024 31.606 -15.931 1 129.06 ? N1N NDP 703 B 1 
HETATM 37 C C2N NDP . . . O 4 -4.773 30.665 -16.925 1 132.04 ? C2N NDP 703 B 1 
HETATM 38 C C3N NDP . . . O 4 -4.283 29.405 -16.618 1 129.44 ? C3N NDP 703 B 1 
HETATM 39 C C7N NDP . . . O 4 -4.036 28.464 -17.628 1 110.48 ? C7N NDP 703 B 1 
HETATM 40 O O7N NDP . . . O 4 -3.043 27.741 -17.588 1 107.32 ? O7N NDP 703 B 1 
HETATM 41 N N7N NDP . . . O 4 -4.922 28.4 -18.618 1 99.4 ? N7N NDP 703 B 1 
HETATM 42 C C4N NDP . . . O 4 -4.032 29.104 -15.278 1 139.37 ? C4N NDP 703 B 1 
HETATM 43 C C5N NDP . . . O 4 -4.273 30.036 -14.266 1 134.11 ? C5N NDP 703 B 1 
HETATM 44 C C6N NDP . . . O 4 -4.766 31.291 -14.586 1 130.33 ? C6N NDP 703 B 1 
HETATM 45 P P2B NDP . . . O 4 -2.062 41.484 -5.277 1 114.54 ? P2B NDP 703 B 1 
HETATM 46 O O1X NDP . . . O 4 -2.988 40.975 -4.266 1 122.91 ? O1X NDP 703 B 1 
HETATM 47 O O2X NDP . . . O 4 -0.697 41.784 -4.814 1 110.08 ? O2X NDP 703 B 1 
HETATM 48 O O3X NDP . . . O 4 -2.672 42.446 -6.225 1 104.74 ? O3X NDP 703 B 1 
#
_model_server_stats.io_time_ms              97 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    260 
_model_server_stats.query_time_ms           329 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           48 
#