data_4KY4
#
_model_server_result.job_id            piUFp44q9sIAfFfN3Grhpw 
_model_server_result.datetime_utc      '2024-10-28 19:24:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ky4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"BA","auth_seq_id":704}' 
#
_entry.id    4KY4 
#
_exptl.entry_id    4KY4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              308.358 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-amino-5-(phenylsulfanyl)-3,9-dihydro-4H-pyrimido[4,5-b]indol-4-one 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         89.97 
_cell.angle_beta          89.95 
_cell.angle_gamma         89.89 
_cell.entry_id            4KY4 
_cell.length_a            53.539 
_cell.length_b            145.122 
_cell.length_c            176.159 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4KY4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,J,K,L,M,N,O,P 1 1 
C,D,Q,R,S,T,U,V,W,X 2 1 
E,F,Y,Z,AA,BA,CA,DA,EA,FA 3 1 
G,H,GA,HA,IA,JA,KA,LA,MA,NA 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 L N N 
? 5 P N N 
? 5 T N N 
? 5 X N N 
? 5 BA N N 
? 5 FA N N 
? 5 JA N N 
? 5 NA N N 
#
_chem_comp.formula           'C16 H12 N4 O S' 
_chem_comp.formula_weight    308.358 
_chem_comp.id                1UE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-amino-5-(phenylsulfanyl)-3,9-dihydro-4H-pyrimido[4,5-b]indol-4-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C8 C7 1UE doub 55 n y 
C8 C9 1UE sing 56 n y 
C7 C5 1UE sing 57 n y 
C9 C1' 1UE doub 58 n y 
C5 N4 1UE sing 59 n y 
C5 C6 1UE doub 60 n y 
N4 C4 1UE sing 61 n y 
C1' C6 1UE sing 62 n y 
C1' S1 1UE sing 63 n n 
C6 C1 1UE sing 64 n y 
C4 C1 1UE doub 65 n y 
C4 N3 1UE sing 66 n n 
S1 C2' 1UE sing 67 n n 
C1 C2 1UE sing 68 n n 
C3' C2' 1UE doub 69 n y 
C3' C4' 1UE sing 70 n y 
N3 C3 1UE doub 71 n n 
C2' C7' 1UE sing 72 n y 
C4' C5' 1UE doub 73 n y 
C2 O1 1UE doub 74 n n 
C2 N1 1UE sing 75 n n 
C3 N1 1UE sing 76 n n 
C3 N2 1UE sing 77 n n 
C7' C6' 1UE doub 78 n y 
C5' C6' 1UE sing 79 n y 
C9 H1 1UE sing 80 n n 
C8 H2 1UE sing 81 n n 
C7 H3 1UE sing 82 n n 
N4 H4 1UE sing 83 n n 
N2 H5 1UE sing 84 n n 
N2 H6 1UE sing 85 n n 
N1 H7 1UE sing 86 n n 
C3' H8 1UE sing 87 n n 
C4' H9 1UE sing 88 n n 
C5' H10 1UE sing 89 n n 
C6' H11 1UE sing 90 n n 
C7' H12 1UE sing 91 n n 
#
_atom_sites.entry_id                     4KY4 
_atom_sites.fract_transf_matrix[1][1]    0.018678 
_atom_sites.fract_transf_matrix[1][2]    -0.000035 
_atom_sites.fract_transf_matrix[1][3]    -0.000017 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006891 
_atom_sites.fract_transf_matrix[2][3]    -0.000003 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005677 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 UMP A 1 701 703 UMP UMP . 
J 3 04J A 1 702 705 04J MTX . 
K 4 NDP A 1 703 706 NDP NDP . 
L 5 1UE A 1 704 707 1UE CP2 . 
M 2 UMP B 1 701 703 UMP UMP . 
N 3 04J B 1 702 705 04J MTX . 
O 4 NDP B 1 703 706 NDP NDP . 
P 5 1UE B 1 704 707 1UE CP2 . 
Q 2 UMP C 1 701 703 UMP UMP . 
R 3 04J C 1 702 705 04J MTX . 
S 4 NDP C 1 703 706 NDP NDP . 
T 5 1UE C 1 704 707 1UE CP2 . 
U 2 UMP D 1 701 703 UMP UMP . 
V 3 04J D 1 702 705 04J MTX . 
W 4 NDP D 1 703 706 NDP NDP . 
X 5 1UE D 1 704 707 1UE CP2 . 
Y 2 UMP E 1 701 703 UMP UMP . 
Z 3 04J E 1 702 705 04J MTX . 
AA 4 NDP E 1 703 706 NDP NDP . 
BA 5 1UE E 1 704 707 1UE CP2 . 
CA 2 UMP F 1 701 703 UMP UMP . 
DA 3 04J F 1 702 705 04J MTX . 
EA 4 NDP F 1 703 706 NDP NDP . 
FA 5 1UE F 1 704 707 1UE CP2 . 
GA 2 UMP G 1 701 703 UMP UMP . 
HA 3 04J G 1 702 705 04J MTX . 
IA 4 NDP G 1 703 706 NDP NDP . 
JA 5 1UE G 1 704 707 1UE CP2 . 
KA 2 UMP H 1 701 703 UMP UMP . 
LA 3 04J H 1 702 705 04J MTX . 
MA 4 NDP H 1 703 706 NDP NDP . 
NA 5 1UE H 1 704 707 1UE CP2 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 1UE . . . BA 5 37.662 19.728 -134.344 1 122.4 ? C2 1UE 704 E 1 
HETATM 2 C C3 1UE . . . BA 5 39.888 18.996 -133.907 1 122.33 ? C3 1UE 704 E 1 
HETATM 3 C C4 1UE . . . BA 5 39.189 19.571 -136.043 1 127.16 ? C4 1UE 704 E 1 
HETATM 4 C C9 1UE . . . BA 5 35.595 21.008 -138.267 1 130.24 ? C9 1UE 704 E 1 
HETATM 5 C C8 1UE . . . BA 5 36.49 20.92 -139.306 1 125.58 ? C8 1UE 704 E 1 
HETATM 6 C C7 1UE . . . BA 5 37.764 20.497 -139.019 1 134.74 ? C7 1UE 704 E 1 
HETATM 7 C C5 1UE . . . BA 5 38.104 20.185 -137.782 1 134.87 ? C5 1UE 704 E 1 
HETATM 8 N N4 1UE . . . BA 5 39.271 19.764 -137.342 1 127.96 ? N4 1UE 704 E 1 
HETATM 9 N N3 1UE . . . BA 5 40.139 19.149 -135.201 1 121.07 ? N3 1UE 704 E 1 
HETATM 10 N N2 1UE . . . BA 5 40.833 18.584 -133.076 1 125 ? N2 1UE 704 E 1 
HETATM 11 N N1 1UE . . . BA 5 38.623 19.288 -133.447 1 123.22 ? N1 1UE 704 E 1 
HETATM 12 O O1 1UE . . . BA 5 36.561 19.973 -133.868 1 115.29 ? O1 1UE 704 E 1 
HETATM 13 C C1 1UE . . . BA 5 37.947 19.868 -135.649 1 124.77 ? C1 1UE 704 E 1 
HETATM 14 C C6 1UE . . . BA 5 37.257 20.263 -136.747 1 133.54 ? C6 1UE 704 E 1 
HETATM 15 C C1' 1UE . . . BA 5 35.996 20.676 -136.99 1 140.79 ? C1' 1UE 704 E 1 
HETATM 16 S S1 1UE . . . BA 5 34.789 20.829 -135.832 1 138.38 ? S1 1UE 704 E 1 
HETATM 17 C C2' 1UE . . . BA 5 35.308 22.245 -135.058 1 150.37 ? C2' 1UE 704 E 1 
HETATM 18 C C3' 1UE . . . BA 5 36.21 23.081 -135.691 1 151.1 ? C3' 1UE 704 E 1 
HETATM 19 C C4' 1UE . . . BA 5 36.645 24.237 -135.068 1 137.64 ? C4' 1UE 704 E 1 
HETATM 20 C C5' 1UE . . . BA 5 36.163 24.547 -133.811 1 139.17 ? C5' 1UE 704 E 1 
HETATM 21 C C6' 1UE . . . BA 5 35.257 23.718 -133.174 1 140 ? C6' 1UE 704 E 1 
HETATM 22 C C7' 1UE . . . BA 5 34.831 22.561 -133.799 1 146.75 ? C7' 1UE 704 E 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    91 
_model_server_stats.query_time_ms           365 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           22 
#