data_4KY4 # _model_server_result.job_id qYfyK4-AdPRybo4Qh2crRQ _model_server_result.datetime_utc '2024-11-27 04:02:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ky4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":704}' # _entry.id 4KY4 # _exptl.entry_id 4KY4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 308.358 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-amino-5-(phenylsulfanyl)-3,9-dihydro-4H-pyrimido[4,5-b]indol-4-one _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 89.97 _cell.angle_beta 89.95 _cell.angle_gamma 89.89 _cell.entry_id 4KY4 _cell.length_a 53.539 _cell.length_b 145.122 _cell.length_c 176.159 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KY4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J,K,L,M,N,O,P 1 1 C,D,Q,R,S,T,U,V,W,X 2 1 E,F,Y,Z,AA,BA,CA,DA,EA,FA 3 1 G,H,GA,HA,IA,JA,KA,LA,MA,NA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 L N N ? 5 P N N ? 5 T N N ? 5 X N N ? 5 BA N N ? 5 FA N N ? 5 JA N N ? 5 NA N N # _chem_comp.formula 'C16 H12 N4 O S' _chem_comp.formula_weight 308.358 _chem_comp.id 1UE _chem_comp.mon_nstd_flag . _chem_comp.name 2-amino-5-(phenylsulfanyl)-3,9-dihydro-4H-pyrimido[4,5-b]indol-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C7 1UE doub 55 n y C8 C9 1UE sing 56 n y C7 C5 1UE sing 57 n y C9 C1' 1UE doub 58 n y C5 N4 1UE sing 59 n y C5 C6 1UE doub 60 n y N4 C4 1UE sing 61 n y C1' C6 1UE sing 62 n y C1' S1 1UE sing 63 n n C6 C1 1UE sing 64 n y C4 C1 1UE doub 65 n y C4 N3 1UE sing 66 n n S1 C2' 1UE sing 67 n n C1 C2 1UE sing 68 n n C3' C2' 1UE doub 69 n y C3' C4' 1UE sing 70 n y N3 C3 1UE doub 71 n n C2' C7' 1UE sing 72 n y C4' C5' 1UE doub 73 n y C2 O1 1UE doub 74 n n C2 N1 1UE sing 75 n n C3 N1 1UE sing 76 n n C3 N2 1UE sing 77 n n C7' C6' 1UE doub 78 n y C5' C6' 1UE sing 79 n y C9 H1 1UE sing 80 n n C8 H2 1UE sing 81 n n C7 H3 1UE sing 82 n n N4 H4 1UE sing 83 n n N2 H5 1UE sing 84 n n N2 H6 1UE sing 85 n n N1 H7 1UE sing 86 n n C3' H8 1UE sing 87 n n C4' H9 1UE sing 88 n n C5' H10 1UE sing 89 n n C6' H11 1UE sing 90 n n C7' H12 1UE sing 91 n n # _atom_sites.entry_id 4KY4 _atom_sites.fract_transf_matrix[1][1] 0.018678 _atom_sites.fract_transf_matrix[1][2] -0.000035 _atom_sites.fract_transf_matrix[1][3] -0.000017 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006891 _atom_sites.fract_transf_matrix[2][3] -0.000003 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005677 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 UMP A 1 701 703 UMP UMP . J 3 04J A 1 702 705 04J MTX . K 4 NDP A 1 703 706 NDP NDP . L 5 1UE A 1 704 707 1UE CP2 . M 2 UMP B 1 701 703 UMP UMP . N 3 04J B 1 702 705 04J MTX . O 4 NDP B 1 703 706 NDP NDP . P 5 1UE B 1 704 707 1UE CP2 . Q 2 UMP C 1 701 703 UMP UMP . R 3 04J C 1 702 705 04J MTX . S 4 NDP C 1 703 706 NDP NDP . T 5 1UE C 1 704 707 1UE CP2 . U 2 UMP D 1 701 703 UMP UMP . V 3 04J D 1 702 705 04J MTX . W 4 NDP D 1 703 706 NDP NDP . X 5 1UE D 1 704 707 1UE CP2 . Y 2 UMP E 1 701 703 UMP UMP . Z 3 04J E 1 702 705 04J MTX . AA 4 NDP E 1 703 706 NDP NDP . BA 5 1UE E 1 704 707 1UE CP2 . CA 2 UMP F 1 701 703 UMP UMP . DA 3 04J F 1 702 705 04J MTX . EA 4 NDP F 1 703 706 NDP NDP . FA 5 1UE F 1 704 707 1UE CP2 . GA 2 UMP G 1 701 703 UMP UMP . HA 3 04J G 1 702 705 04J MTX . IA 4 NDP G 1 703 706 NDP NDP . JA 5 1UE G 1 704 707 1UE CP2 . KA 2 UMP H 1 701 703 UMP UMP . LA 3 04J H 1 702 705 04J MTX . MA 4 NDP H 1 703 706 NDP NDP . NA 5 1UE H 1 704 707 1UE CP2 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 1UE . . . P 5 6.438 11.559 -54.778 1 141.08 ? C2 1UE 704 B 1 HETATM 2 C C3 1UE . . . P 5 8.451 10.719 -55.765 1 138.42 ? C3 1UE 704 B 1 HETATM 3 C C4 1UE . . . P 5 6.585 11.206 -57.051 1 144.37 ? C4 1UE 704 B 1 HETATM 4 C C9 1UE . . . P 5 2.409 12.717 -56.69 1 141.59 ? C9 1UE 704 B 1 HETATM 5 C C8 1UE . . . P 5 2.468 12.519 -58.042 1 137.66 ? C8 1UE 704 B 1 HETATM 6 C C7 1UE . . . P 5 3.636 12.037 -58.569 1 141.32 ? C7 1UE 704 B 1 HETATM 7 C C5 1UE . . . P 5 4.668 11.778 -57.79 1 149.41 ? C5 1UE 704 B 1 HETATM 8 N N4 1UE . . . P 5 5.852 11.319 -58.139 1 140.12 ? N4 1UE 704 B 1 HETATM 9 N N3 1UE . . . P 5 7.844 10.775 -56.945 1 133.89 ? N3 1UE 704 B 1 HETATM 10 N N2 1UE . . . P 5 9.708 10.295 -55.675 1 136.42 ? N2 1UE 704 B 1 HETATM 11 N N1 1UE . . . P 5 7.747 11.113 -54.64 1 141.43 ? N1 1UE 704 B 1 HETATM 12 O O1 1UE . . . P 5 5.87 11.892 -53.744 1 112.88 ? O1 1UE 704 B 1 HETATM 13 C C1 1UE . . . P 5 5.859 11.602 -55.994 1 149.06 ? C1 1UE 704 B 1 HETATM 14 C C6 1UE . . . P 5 4.642 11.967 -56.462 1 159.16 ? C6 1UE 704 B 1 HETATM 15 C C1' 1UE . . . P 5 3.509 12.441 -55.911 1 158.24 ? C1' 1UE 704 B 1 HETATM 16 S S1 1UE . . . P 5 3.27 12.744 -54.262 1 155.53 ? S1 1UE 704 B 1 HETATM 17 C C2' 1UE . . . P 5 4.269 14.049 -54.052 1 163.32 ? C2' 1UE 704 B 1 HETATM 18 C C3' 1UE . . . P 5 5.322 14.258 -54.93 1 169.37 ? C3' 1UE 704 B 1 HETATM 19 C C4' 1UE . . . P 5 6.168 15.342 -54.755 1 166.64 ? C4' 1UE 704 B 1 HETATM 20 C C5' 1UE . . . P 5 5.946 16.209 -53.697 1 162.24 ? C5' 1UE 704 B 1 HETATM 21 C C6' 1UE . . . P 5 4.893 16 -52.821 1 160.86 ? C6' 1UE 704 B 1 HETATM 22 C C7' 1UE . . . P 5 4.051 14.915 -52.998 1 160.51 ? C7' 1UE 704 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 22 #