data_4KY8
#
_model_server_result.job_id            qF5a-FUSynfVwLExI4W9_Q 
_model_server_result.datetime_utc      '2024-11-25 16:29:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ky8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":601}' 
#
_entry.id    4KY8 
#
_exptl.entry_id    4KY8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.36 
_cell.angle_gamma         90 
_cell.entry_id            4KY8 
_cell.length_a            214.162 
_cell.length_b            115.665 
_cell.length_c            218.767 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4KY8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA monomeric 1 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,F,G,H,I,J,K,L,M 1 1 
C,D,N,O,P,Q,R,S,T,U 2 1 
E,V,W,X,Y 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 F N N 
? 2 J N N 
? 2 N N N 
? 2 R N N 
? 2 V N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 344 n n 
PA O2A NDP sing 345 n n 
PA O5B NDP sing 346 n n 
PA O3 NDP sing 347 n n 
O2A HOA2 NDP sing 348 n n 
O5B C5B NDP sing 349 n n 
C5B C4B NDP sing 350 n n 
C5B H51A NDP sing 351 n n 
C5B H52A NDP sing 352 n n 
C4B O4B NDP sing 353 n n 
C4B C3B NDP sing 354 n n 
C4B H4B NDP sing 355 n n 
O4B C1B NDP sing 356 n n 
C3B O3B NDP sing 357 n n 
C3B C2B NDP sing 358 n n 
C3B H3B NDP sing 359 n n 
O3B HO3A NDP sing 360 n n 
C2B O2B NDP sing 361 n n 
C2B C1B NDP sing 362 n n 
C2B H2B NDP sing 363 n n 
O2B P2B NDP sing 364 n n 
C1B N9A NDP sing 365 n n 
C1B H1B NDP sing 366 n n 
N9A C8A NDP sing 367 n y 
N9A C4A NDP sing 368 n y 
C8A N7A NDP doub 369 n y 
C8A H8A NDP sing 370 n n 
N7A C5A NDP sing 371 n y 
C5A C6A NDP sing 372 n y 
C5A C4A NDP doub 373 n y 
C6A N6A NDP sing 374 n n 
C6A N1A NDP doub 375 n y 
N6A H61A NDP sing 376 n n 
N6A H62A NDP sing 377 n n 
N1A C2A NDP sing 378 n y 
C2A N3A NDP doub 379 n y 
C2A H2A NDP sing 380 n n 
N3A C4A NDP sing 381 n y 
O3 PN NDP sing 382 n n 
PN O1N NDP doub 383 n n 
PN O2N NDP sing 384 n n 
PN O5D NDP sing 385 n n 
O2N H21N NDP sing 386 n n 
O5D C5D NDP sing 387 n n 
C5D C4D NDP sing 388 n n 
C5D H51N NDP sing 389 n n 
C5D H52N NDP sing 390 n n 
C4D O4D NDP sing 391 n n 
C4D C3D NDP sing 392 n n 
C4D H4D NDP sing 393 n n 
O4D C1D NDP sing 394 n n 
C3D O3D NDP sing 395 n n 
C3D C2D NDP sing 396 n n 
C3D H3D NDP sing 397 n n 
O3D HO3N NDP sing 398 n n 
C2D O2D NDP sing 399 n n 
C2D C1D NDP sing 400 n n 
C2D H2D NDP sing 401 n n 
O2D HO2N NDP sing 402 n n 
C1D N1N NDP sing 403 n n 
C1D H1D NDP sing 404 n n 
N1N C2N NDP sing 405 n n 
N1N C6N NDP sing 406 n n 
C2N C3N NDP doub 407 n n 
C2N H2N NDP sing 408 n n 
C3N C7N NDP sing 409 n n 
C3N C4N NDP sing 410 n n 
C7N O7N NDP doub 411 n n 
C7N N7N NDP sing 412 n n 
N7N H71N NDP sing 413 n n 
N7N H72N NDP sing 414 n n 
C4N C5N NDP sing 415 n n 
C4N H41N NDP sing 416 n n 
C4N H42N NDP sing 417 n n 
C5N C6N NDP doub 418 n n 
C5N H5N NDP sing 419 n n 
C6N H6N NDP sing 420 n n 
P2B O1X NDP doub 421 n n 
P2B O2X NDP sing 422 n n 
P2B O3X NDP sing 423 n n 
O2X HOP2 NDP sing 424 n n 
O3X HOP3 NDP sing 425 n n 
#
_atom_sites.entry_id                     4KY8 
_atom_sites.fract_transf_matrix[1][1]    0.004669 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000356 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008646 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004584 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 NDP A 1 601 207 NDP NDP . 
G 3 UFP A 1 602 1 UFP UFP . 
H 4 MTX A 1 603 161 MTX MTX . 
I 5 1UF A 1 604 1 1UF 1UF . 
J 2 NDP B 1 601 207 NDP NDP . 
K 3 UFP B 1 602 1 UFP UFP . 
L 4 MTX B 1 603 161 MTX MTX . 
M 5 1UF B 1 604 1 1UF 1UF . 
N 2 NDP C 1 601 207 NDP NDP . 
O 3 UFP C 1 602 1 UFP UFP . 
P 4 MTX C 1 603 161 MTX MTX . 
Q 5 1UF C 1 604 1 1UF 1UF . 
R 2 NDP D 1 601 207 NDP NDP . 
S 3 UFP D 1 602 1 UFP UFP . 
T 4 MTX D 1 603 161 MTX MTX . 
U 5 1UF D 1 604 1 1UF 1UF . 
V 2 NDP E 1 601 207 NDP NDP . 
W 3 UFP E 1 602 1 UFP UFP . 
X 4 MTX E 1 603 161 MTX MTX . 
Y 5 1UF E 1 604 1 1UF 1UF . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . F 2 228.618 -145.154 519.723 1 66.77 ? PA NDP 601 A 1 
HETATM 2 O O1A NDP . . . F 2 229.755 -145.438 520.684 1 62.92 ? O1A NDP 601 A 1 
HETATM 3 O O2A NDP . . . F 2 228.896 -143.888 518.963 1 71.74 ? O2A NDP 601 A 1 
HETATM 4 O O5B NDP . . . F 2 228.485 -146.308 518.726 1 71.01 ? O5B NDP 601 A 1 
HETATM 5 C C5B NDP . . . F 2 228.579 -147.63 519.174 1 69.23 ? C5B NDP 601 A 1 
HETATM 6 C C4B NDP . . . F 2 228.462 -148.673 518.146 1 74.09 ? C4B NDP 601 A 1 
HETATM 7 O O4B NDP . . . F 2 229.723 -148.927 517.566 1 73.63 ? O4B NDP 601 A 1 
HETATM 8 C C3B NDP . . . F 2 228.011 -149.945 518.711 1 75.43 ? C3B NDP 601 A 1 
HETATM 9 O O3B NDP . . . F 2 226.632 -150.034 518.688 1 77.42 ? O3B NDP 601 A 1 
HETATM 10 C C2B NDP . . . F 2 228.602 -150.917 517.827 1 76.49 ? C2B NDP 601 A 1 
HETATM 11 O O2B NDP . . . F 2 227.833 -151.035 516.664 1 77.69 ? O2B NDP 601 A 1 
HETATM 12 C C1B NDP . . . F 2 229.891 -150.331 517.501 1 74.67 ? C1B NDP 601 A 1 
HETATM 13 N N9A NDP . . . F 2 230.867 -150.737 518.453 1 78.14 ? N9A NDP 601 A 1 
HETATM 14 C C8A NDP . . . F 2 231.235 -150.049 519.561 1 73.32 ? C8A NDP 601 A 1 
HETATM 15 N N7A NDP . . . F 2 232.183 -150.742 520.222 1 71.62 ? N7A NDP 601 A 1 
HETATM 16 C C5A NDP . . . F 2 232.435 -151.902 519.527 1 75.64 ? C5A NDP 601 A 1 
HETATM 17 C C6A NDP . . . F 2 233.303 -153.009 519.712 1 75.01 ? C6A NDP 601 A 1 
HETATM 18 N N6A NDP . . . F 2 234.206 -153.053 520.889 1 83.38 ? N6A NDP 601 A 1 
HETATM 19 N N1A NDP . . . F 2 233.311 -154.031 518.812 1 74.92 ? N1A NDP 601 A 1 
HETATM 20 C C2A NDP . . . F 2 232.479 -153.981 517.736 1 76.72 ? C2A NDP 601 A 1 
HETATM 21 N N3A NDP . . . F 2 231.646 -152.959 517.52 1 76.25 ? N3A NDP 601 A 1 
HETATM 22 C C4A NDP . . . F 2 231.6 -151.896 518.407 1 75.81 ? C4A NDP 601 A 1 
HETATM 23 O O3 NDP . . . F 2 227.25 -144.99 520.514 1 74.18 ? O3 NDP 601 A 1 
HETATM 24 P PN NDP . . . F 2 227.148 -143.99 521.74 1 75.51 ? PN NDP 601 A 1 
HETATM 25 O O1N NDP . . . F 2 225.716 -143.982 522.283 1 76.88 ? O1N NDP 601 A 1 
HETATM 26 O O2N NDP . . . F 2 228.101 -144.433 522.83 1 65.83 ? O2N NDP 601 A 1 
HETATM 27 O O5D NDP . . . F 2 227.541 -142.503 521.237 1 71.74 ? O5D NDP 601 A 1 
HETATM 28 C C5D NDP . . . F 2 226.623 -141.751 520.492 1 75.18 ? C5D NDP 601 A 1 
HETATM 29 C C4D NDP . . . F 2 226.117 -140.537 521.11 1 82.18 ? C4D NDP 601 A 1 
HETATM 30 O O4D NDP . . . F 2 227.209 -139.676 521.426 1 77.53 ? O4D NDP 601 A 1 
HETATM 31 C C3D NDP . . . F 2 225.242 -139.797 520.192 1 72.95 ? C3D NDP 601 A 1 
HETATM 32 O O3D NDP . . . F 2 224.211 -139.197 520.908 1 70.98 ? O3D NDP 601 A 1 
HETATM 33 C C2D NDP . . . F 2 226.087 -138.795 519.632 1 76.48 ? C2D NDP 601 A 1 
HETATM 34 O O2D NDP . . . F 2 225.338 -137.672 519.29 1 75.89 ? O2D NDP 601 A 1 
HETATM 35 C C1D NDP . . . F 2 227.036 -138.49 520.724 1 73.86 ? C1D NDP 601 A 1 
HETATM 36 N N1N NDP . . . F 2 228.275 -137.999 520.197 1 73.73 ? N1N NDP 601 A 1 
HETATM 37 C C2N NDP . . . F 2 228.781 -136.859 520.698 1 67.71 ? C2N NDP 601 A 1 
HETATM 38 C C3N NDP . . . F 2 229.99 -136.328 520.222 1 67.36 ? C3N NDP 601 A 1 
HETATM 39 C C7N NDP . . . F 2 230.525 -135.032 520.818 1 68.02 ? C7N NDP 601 A 1 
HETATM 40 O O7N NDP . . . F 2 231.654 -134.635 520.492 1 67.61 ? O7N NDP 601 A 1 
HETATM 41 N N7N NDP . . . F 2 229.756 -134.252 521.746 1 65.87 ? N7N NDP 601 A 1 
HETATM 42 C C4N NDP . . . F 2 230.685 -137.003 519.202 1 71.49 ? C4N NDP 601 A 1 
HETATM 43 C C5N NDP . . . F 2 230.125 -138.187 518.702 1 73.04 ? C5N NDP 601 A 1 
HETATM 44 C C6N NDP . . . F 2 228.925 -138.68 519.204 1 74.27 ? C6N NDP 601 A 1 
HETATM 45 P P2B NDP . . . F 2 227.123 -152.374 516.285 1 71.62 ? P2B NDP 601 A 1 
HETATM 46 O O1X NDP . . . F 2 225.606 -152.225 516.498 1 80.45 ? O1X NDP 601 A 1 
HETATM 47 O O2X NDP . . . F 2 227.389 -152.68 514.866 1 72.66 ? O2X NDP 601 A 1 
HETATM 48 O O3X NDP . . . F 2 227.631 -153.497 517.13 1 75.31 ? O3X NDP 601 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           48 
#