data_4KY8
#
_model_server_result.job_id            N-lrJ1BJy7LRQBTWG92vRw 
_model_server_result.datetime_utc      '2024-11-29 07:08:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ky8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":601}' 
#
_entry.id    4KY8 
#
_exptl.entry_id    4KY8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.36 
_cell.angle_gamma         90 
_cell.entry_id            4KY8 
_cell.length_a            214.162 
_cell.length_b            115.665 
_cell.length_c            218.767 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4KY8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA monomeric 1 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,F,G,H,I,J,K,L,M 1 1 
C,D,N,O,P,Q,R,S,T,U 2 1 
E,V,W,X,Y 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 F N N 
? 2 J N N 
? 2 N N N 
? 2 R N N 
? 2 V N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 344 n n 
PA O2A NDP sing 345 n n 
PA O5B NDP sing 346 n n 
PA O3 NDP sing 347 n n 
O2A HOA2 NDP sing 348 n n 
O5B C5B NDP sing 349 n n 
C5B C4B NDP sing 350 n n 
C5B H51A NDP sing 351 n n 
C5B H52A NDP sing 352 n n 
C4B O4B NDP sing 353 n n 
C4B C3B NDP sing 354 n n 
C4B H4B NDP sing 355 n n 
O4B C1B NDP sing 356 n n 
C3B O3B NDP sing 357 n n 
C3B C2B NDP sing 358 n n 
C3B H3B NDP sing 359 n n 
O3B HO3A NDP sing 360 n n 
C2B O2B NDP sing 361 n n 
C2B C1B NDP sing 362 n n 
C2B H2B NDP sing 363 n n 
O2B P2B NDP sing 364 n n 
C1B N9A NDP sing 365 n n 
C1B H1B NDP sing 366 n n 
N9A C8A NDP sing 367 n y 
N9A C4A NDP sing 368 n y 
C8A N7A NDP doub 369 n y 
C8A H8A NDP sing 370 n n 
N7A C5A NDP sing 371 n y 
C5A C6A NDP sing 372 n y 
C5A C4A NDP doub 373 n y 
C6A N6A NDP sing 374 n n 
C6A N1A NDP doub 375 n y 
N6A H61A NDP sing 376 n n 
N6A H62A NDP sing 377 n n 
N1A C2A NDP sing 378 n y 
C2A N3A NDP doub 379 n y 
C2A H2A NDP sing 380 n n 
N3A C4A NDP sing 381 n y 
O3 PN NDP sing 382 n n 
PN O1N NDP doub 383 n n 
PN O2N NDP sing 384 n n 
PN O5D NDP sing 385 n n 
O2N H21N NDP sing 386 n n 
O5D C5D NDP sing 387 n n 
C5D C4D NDP sing 388 n n 
C5D H51N NDP sing 389 n n 
C5D H52N NDP sing 390 n n 
C4D O4D NDP sing 391 n n 
C4D C3D NDP sing 392 n n 
C4D H4D NDP sing 393 n n 
O4D C1D NDP sing 394 n n 
C3D O3D NDP sing 395 n n 
C3D C2D NDP sing 396 n n 
C3D H3D NDP sing 397 n n 
O3D HO3N NDP sing 398 n n 
C2D O2D NDP sing 399 n n 
C2D C1D NDP sing 400 n n 
C2D H2D NDP sing 401 n n 
O2D HO2N NDP sing 402 n n 
C1D N1N NDP sing 403 n n 
C1D H1D NDP sing 404 n n 
N1N C2N NDP sing 405 n n 
N1N C6N NDP sing 406 n n 
C2N C3N NDP doub 407 n n 
C2N H2N NDP sing 408 n n 
C3N C7N NDP sing 409 n n 
C3N C4N NDP sing 410 n n 
C7N O7N NDP doub 411 n n 
C7N N7N NDP sing 412 n n 
N7N H71N NDP sing 413 n n 
N7N H72N NDP sing 414 n n 
C4N C5N NDP sing 415 n n 
C4N H41N NDP sing 416 n n 
C4N H42N NDP sing 417 n n 
C5N C6N NDP doub 418 n n 
C5N H5N NDP sing 419 n n 
C6N H6N NDP sing 420 n n 
P2B O1X NDP doub 421 n n 
P2B O2X NDP sing 422 n n 
P2B O3X NDP sing 423 n n 
O2X HOP2 NDP sing 424 n n 
O3X HOP3 NDP sing 425 n n 
#
_atom_sites.entry_id                     4KY8 
_atom_sites.fract_transf_matrix[1][1]    0.004669 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000356 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008646 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004584 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 NDP A 1 601 207 NDP NDP . 
G 3 UFP A 1 602 1 UFP UFP . 
H 4 MTX A 1 603 161 MTX MTX . 
I 5 1UF A 1 604 1 1UF 1UF . 
J 2 NDP B 1 601 207 NDP NDP . 
K 3 UFP B 1 602 1 UFP UFP . 
L 4 MTX B 1 603 161 MTX MTX . 
M 5 1UF B 1 604 1 1UF 1UF . 
N 2 NDP C 1 601 207 NDP NDP . 
O 3 UFP C 1 602 1 UFP UFP . 
P 4 MTX C 1 603 161 MTX MTX . 
Q 5 1UF C 1 604 1 1UF 1UF . 
R 2 NDP D 1 601 207 NDP NDP . 
S 3 UFP D 1 602 1 UFP UFP . 
T 4 MTX D 1 603 161 MTX MTX . 
U 5 1UF D 1 604 1 1UF 1UF . 
V 2 NDP E 1 601 207 NDP NDP . 
W 3 UFP E 1 602 1 UFP UFP . 
X 4 MTX E 1 603 161 MTX MTX . 
Y 5 1UF E 1 604 1 1UF 1UF . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . J 2 296.775 -108.964 521.945 1 61.75 ? PA NDP 601 B 1 
HETATM 2 O O1A NDP . . . J 2 295.695 -109.229 520.917 1 57.9 ? O1A NDP 601 B 1 
HETATM 3 O O2A NDP . . . J 2 296.378 -109.577 523.259 1 66.72 ? O2A NDP 601 B 1 
HETATM 4 O O5B NDP . . . J 2 298.09 -109.588 521.467 1 65.99 ? O5B NDP 601 B 1 
HETATM 5 C C5B NDP . . . J 2 298.12 -110.929 521.078 1 64.21 ? C5B NDP 601 B 1 
HETATM 6 C C4B NDP . . . J 2 299.435 -111.585 521.055 1 69.07 ? C4B NDP 601 B 1 
HETATM 7 O O4B NDP . . . J 2 299.292 -112.946 520.712 1 68.61 ? O4B NDP 601 B 1 
HETATM 8 C C3B NDP . . . J 2 300.314 -111 520.042 1 70.41 ? C3B NDP 601 B 1 
HETATM 9 O O3B NDP . . . J 2 301.067 -109.974 520.582 1 72.4 ? O3B NDP 601 B 1 
HETATM 10 C C2B NDP . . . J 2 301.154 -112.108 519.662 1 71.47 ? C2B NDP 601 B 1 
HETATM 11 O O2B NDP . . . J 2 302.174 -112.266 520.607 1 72.67 ? O2B NDP 601 B 1 
HETATM 12 C C1B NDP . . . J 2 300.256 -113.25 519.721 1 69.65 ? C1B NDP 601 B 1 
HETATM 13 N N9A NDP . . . J 2 299.596 -113.431 518.473 1 73.12 ? N9A NDP 601 B 1 
HETATM 14 C C8A NDP . . . J 2 298.48 -112.777 518.067 1 68.3 ? C8A NDP 601 B 1 
HETATM 15 N N7A NDP . . . J 2 298.136 -113.2 516.836 1 66.6 ? N7A NDP 601 B 1 
HETATM 16 C C5A NDP . . . J 2 299.047 -114.15 516.436 1 70.62 ? C5A NDP 601 B 1 
HETATM 17 C C6A NDP . . . J 2 299.212 -114.941 515.27 1 69.99 ? C6A NDP 601 B 1 
HETATM 18 N N6A NDP . . . J 2 298.248 -114.81 514.149 1 78.36 ? N6A NDP 601 B 1 
HETATM 19 N N1A NDP . . . J 2 300.251 -115.818 515.179 1 69.9 ? N1A NDP 601 B 1 
HETATM 20 C C2A NDP . . . J 2 301.127 -115.926 516.215 1 71.7 ? C2A NDP 601 B 1 
HETATM 21 N N3A NDP . . . J 2 301.009 -115.201 517.333 1 71.23 ? N3A NDP 601 B 1 
HETATM 22 C C4A NDP . . . J 2 299.97 -114.295 517.475 1 70.79 ? C4A NDP 601 B 1 
HETATM 23 O O3 NDP . . . J 2 297.005 -107.401 522.123 1 69.16 ? O3 NDP 601 B 1 
HETATM 24 P PN NDP . . . J 2 295.826 -106.36 521.924 1 70.49 ? PN NDP 601 B 1 
HETATM 25 O O1N NDP . . . J 2 296.356 -104.939 522.143 1 71.86 ? O1N NDP 601 B 1 
HETATM 26 O O2N NDP . . . J 2 295.268 -106.471 520.521 1 60.81 ? O2N NDP 601 B 1 
HETATM 27 O O5D NDP . . . J 2 294.674 -106.676 523.015 1 66.72 ? O5D NDP 601 B 1 
HETATM 28 C C5D NDP . . . J 2 294.935 -106.464 524.375 1 70.16 ? C5D NDP 601 B 1 
HETATM 29 C C4D NDP . . . J 2 294.464 -105.215 524.949 1 77.16 ? C4D NDP 601 B 1 
HETATM 30 O O4D NDP . . . J 2 293.042 -105.239 525.046 1 72.51 ? O4D NDP 601 B 1 
HETATM 31 C C3D NDP . . . J 2 294.959 -105.035 526.316 1 67.93 ? C3D NDP 601 B 1 
HETATM 32 O O3D NDP . . . J 2 295.002 -103.678 526.618 1 65.96 ? O3D NDP 601 B 1 
HETATM 33 C C2D NDP . . . J 2 293.969 -105.681 527.112 1 71.46 ? C2D NDP 601 B 1 
HETATM 34 O O2D NDP . . . J 2 293.925 -105.126 528.389 1 70.87 ? O2D NDP 601 B 1 
HETATM 35 C C1D NDP . . . J 2 292.706 -105.434 526.381 1 68.84 ? C1D NDP 601 B 1 
HETATM 36 N N1N NDP . . . J 2 291.805 -106.535 526.549 1 68.71 ? N1N NDP 601 B 1 
HETATM 37 C C2N NDP . . . J 2 290.503 -106.275 526.761 1 62.69 ? C2N NDP 601 B 1 
HETATM 38 C C3N NDP . . . J 2 289.573 -107.312 526.934 1 62.34 ? C3N NDP 601 B 1 
HETATM 39 C C7N NDP . . . J 2 288.109 -106.973 527.173 1 63 ? C7N NDP 601 B 1 
HETATM 40 O O7N NDP . . . J 2 287.275 -107.89 527.224 1 62.59 ? O7N NDP 601 B 1 
HETATM 41 N N7N NDP . . . J 2 287.67 -105.616 527.346 1 60.85 ? N7N NDP 601 B 1 
HETATM 42 C C4N NDP . . . J 2 290.011 -108.648 526.884 1 66.47 ? C4N NDP 601 B 1 
HETATM 43 C C5N NDP . . . J 2 291.375 -108.879 526.663 1 68.02 ? C5N NDP 601 B 1 
HETATM 44 C C6N NDP . . . J 2 292.265 -107.823 526.494 1 69.25 ? C6N NDP 601 B 1 
HETATM 45 P P2B NDP . . . J 2 303.671 -112.427 520.189 1 66.6 ? P2B NDP 601 B 1 
HETATM 46 O O1X NDP . . . J 2 304.42 -111.113 520.479 1 75.43 ? O1X NDP 601 B 1 
HETATM 47 O O2X NDP . . . J 2 304.273 -113.518 520.978 1 67.64 ? O2X NDP 601 B 1 
HETATM 48 O O3X NDP . . . J 2 303.787 -112.75 518.734 1 70.29 ? O3X NDP 601 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           246 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           48 
#