data_4KY8
#
_model_server_result.job_id            0tnJyqr0oXtkPlwBGL0wTA 
_model_server_result.datetime_utc      '2024-11-25 16:25:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ky8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":601}' 
#
_entry.id    4KY8 
#
_exptl.entry_id    4KY8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.36 
_cell.angle_gamma         90 
_cell.entry_id            4KY8 
_cell.length_a            214.162 
_cell.length_b            115.665 
_cell.length_c            218.767 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4KY8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA monomeric 1 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,F,G,H,I,J,K,L,M 1 1 
C,D,N,O,P,Q,R,S,T,U 2 1 
E,V,W,X,Y 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 F N N 
? 2 J N N 
? 2 N N N 
? 2 R N N 
? 2 V N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 344 n n 
PA O2A NDP sing 345 n n 
PA O5B NDP sing 346 n n 
PA O3 NDP sing 347 n n 
O2A HOA2 NDP sing 348 n n 
O5B C5B NDP sing 349 n n 
C5B C4B NDP sing 350 n n 
C5B H51A NDP sing 351 n n 
C5B H52A NDP sing 352 n n 
C4B O4B NDP sing 353 n n 
C4B C3B NDP sing 354 n n 
C4B H4B NDP sing 355 n n 
O4B C1B NDP sing 356 n n 
C3B O3B NDP sing 357 n n 
C3B C2B NDP sing 358 n n 
C3B H3B NDP sing 359 n n 
O3B HO3A NDP sing 360 n n 
C2B O2B NDP sing 361 n n 
C2B C1B NDP sing 362 n n 
C2B H2B NDP sing 363 n n 
O2B P2B NDP sing 364 n n 
C1B N9A NDP sing 365 n n 
C1B H1B NDP sing 366 n n 
N9A C8A NDP sing 367 n y 
N9A C4A NDP sing 368 n y 
C8A N7A NDP doub 369 n y 
C8A H8A NDP sing 370 n n 
N7A C5A NDP sing 371 n y 
C5A C6A NDP sing 372 n y 
C5A C4A NDP doub 373 n y 
C6A N6A NDP sing 374 n n 
C6A N1A NDP doub 375 n y 
N6A H61A NDP sing 376 n n 
N6A H62A NDP sing 377 n n 
N1A C2A NDP sing 378 n y 
C2A N3A NDP doub 379 n y 
C2A H2A NDP sing 380 n n 
N3A C4A NDP sing 381 n y 
O3 PN NDP sing 382 n n 
PN O1N NDP doub 383 n n 
PN O2N NDP sing 384 n n 
PN O5D NDP sing 385 n n 
O2N H21N NDP sing 386 n n 
O5D C5D NDP sing 387 n n 
C5D C4D NDP sing 388 n n 
C5D H51N NDP sing 389 n n 
C5D H52N NDP sing 390 n n 
C4D O4D NDP sing 391 n n 
C4D C3D NDP sing 392 n n 
C4D H4D NDP sing 393 n n 
O4D C1D NDP sing 394 n n 
C3D O3D NDP sing 395 n n 
C3D C2D NDP sing 396 n n 
C3D H3D NDP sing 397 n n 
O3D HO3N NDP sing 398 n n 
C2D O2D NDP sing 399 n n 
C2D C1D NDP sing 400 n n 
C2D H2D NDP sing 401 n n 
O2D HO2N NDP sing 402 n n 
C1D N1N NDP sing 403 n n 
C1D H1D NDP sing 404 n n 
N1N C2N NDP sing 405 n n 
N1N C6N NDP sing 406 n n 
C2N C3N NDP doub 407 n n 
C2N H2N NDP sing 408 n n 
C3N C7N NDP sing 409 n n 
C3N C4N NDP sing 410 n n 
C7N O7N NDP doub 411 n n 
C7N N7N NDP sing 412 n n 
N7N H71N NDP sing 413 n n 
N7N H72N NDP sing 414 n n 
C4N C5N NDP sing 415 n n 
C4N H41N NDP sing 416 n n 
C4N H42N NDP sing 417 n n 
C5N C6N NDP doub 418 n n 
C5N H5N NDP sing 419 n n 
C6N H6N NDP sing 420 n n 
P2B O1X NDP doub 421 n n 
P2B O2X NDP sing 422 n n 
P2B O3X NDP sing 423 n n 
O2X HOP2 NDP sing 424 n n 
O3X HOP3 NDP sing 425 n n 
#
_atom_sites.entry_id                     4KY8 
_atom_sites.fract_transf_matrix[1][1]    0.004669 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000356 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008646 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004584 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 NDP A 1 601 207 NDP NDP . 
G 3 UFP A 1 602 1 UFP UFP . 
H 4 MTX A 1 603 161 MTX MTX . 
I 5 1UF A 1 604 1 1UF 1UF . 
J 2 NDP B 1 601 207 NDP NDP . 
K 3 UFP B 1 602 1 UFP UFP . 
L 4 MTX B 1 603 161 MTX MTX . 
M 5 1UF B 1 604 1 1UF 1UF . 
N 2 NDP C 1 601 207 NDP NDP . 
O 3 UFP C 1 602 1 UFP UFP . 
P 4 MTX C 1 603 161 MTX MTX . 
Q 5 1UF C 1 604 1 1UF 1UF . 
R 2 NDP D 1 601 207 NDP NDP . 
S 3 UFP D 1 602 1 UFP UFP . 
T 4 MTX D 1 603 161 MTX MTX . 
U 5 1UF D 1 604 1 1UF 1UF . 
V 2 NDP E 1 601 207 NDP NDP . 
W 3 UFP E 1 602 1 UFP UFP . 
X 4 MTX E 1 603 161 MTX MTX . 
Y 5 1UF E 1 604 1 1UF 1UF . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . R 2 233.459 -90.835 500.208 1 84.12 ? PA NDP 601 D 1 
HETATM 2 O O1A NDP . . . R 2 232.623 -90.966 498.952 1 80.27 ? O1A NDP 601 D 1 
HETATM 3 O O2A NDP . . . R 2 234.13 -92.146 500.506 1 89.09 ? O2A NDP 601 D 1 
HETATM 4 O O5B NDP . . . R 2 234.52 -89.752 499.993 1 88.36 ? O5B NDP 601 D 1 
HETATM 5 C C5B NDP . . . R 2 235.32 -89.771 498.847 1 86.58 ? C5B NDP 601 D 1 
HETATM 6 C C4B NDP . . . R 2 236.536 -88.947 498.886 1 91.44 ? C4B NDP 601 D 1 
HETATM 7 O O4B NDP . . . R 2 237.374 -89.259 497.795 1 90.98 ? O4B NDP 601 D 1 
HETATM 8 C C3B NDP . . . R 2 236.232 -87.52 498.762 1 92.78 ? C3B NDP 601 D 1 
HETATM 9 O O3B NDP . . . R 2 236.03 -86.949 500.005 1 94.77 ? O3B NDP 601 D 1 
HETATM 10 C C2B NDP . . . R 2 237.422 -86.992 498.146 1 93.84 ? C2B NDP 601 D 1 
HETATM 11 O O2B NDP . . . R 2 238.415 -86.832 499.12 1 95.04 ? O2B NDP 601 D 1 
HETATM 12 C C1B NDP . . . R 2 237.818 -88.042 497.223 1 92.02 ? C1B NDP 601 D 1 
HETATM 13 N N9A NDP . . . R 2 237.185 -87.87 495.96 1 95.49 ? N9A NDP 601 D 1 
HETATM 14 C C8A NDP . . . R 2 235.995 -88.407 495.594 1 90.67 ? C8A NDP 601 D 1 
HETATM 15 N N7A NDP . . . R 2 235.707 -88.039 494.33 1 88.97 ? N7A NDP 601 D 1 
HETATM 16 C C5A NDP . . . R 2 236.733 -87.25 493.866 1 92.99 ? C5A NDP 601 D 1 
HETATM 17 C C6A NDP . . . R 2 237 -86.579 492.644 1 92.36 ? C6A NDP 601 D 1 
HETATM 18 N N6A NDP . . . R 2 236.028 -86.668 491.524 1 100.73 ? N6A NDP 601 D 1 
HETATM 19 N N1A NDP . . . R 2 238.144 -85.855 492.496 1 92.27 ? N1A NDP 601 D 1 
HETATM 20 C C2A NDP . . . R 2 239.027 -85.779 493.528 1 94.07 ? C2A NDP 601 D 1 
HETATM 21 N N3A NDP . . . R 2 238.817 -86.395 494.697 1 93.6 ? N3A NDP 601 D 1 
HETATM 22 C C4A NDP . . . R 2 237.669 -87.145 494.899 1 93.16 ? C4A NDP 601 D 1 
HETATM 23 O O3 NDP . . . R 2 232.556 -90.398 501.442 1 91.53 ? O3 NDP 601 D 1 
HETATM 24 P PN NDP . . . R 2 231.007 -90.736 501.521 1 92.86 ? PN NDP 601 D 1 
HETATM 25 O O1N NDP . . . R 2 230.413 -90.069 502.766 1 94.23 ? O1N NDP 601 D 1 
HETATM 26 O O2N NDP . . . R 2 230.291 -90.219 500.29 1 83.18 ? O2N NDP 601 D 1 
HETATM 27 O O5D NDP . . . R 2 230.828 -92.34 501.639 1 89.09 ? O5D NDP 601 D 1 
HETATM 28 C C5D NDP . . . R 2 231.221 -92.995 502.814 1 92.53 ? C5D NDP 601 D 1 
HETATM 29 C C4D NDP . . . R 2 230.192 -93.252 503.809 1 99.53 ? C4D NDP 601 D 1 
HETATM 30 O O4D NDP . . . R 2 229.347 -94.313 503.372 1 94.88 ? O4D NDP 601 D 1 
HETATM 31 C C3D NDP . . . R 2 230.781 -93.701 505.074 1 90.3 ? C3D NDP 601 D 1 
HETATM 32 O O3D NDP . . . R 2 229.933 -93.383 506.13 1 88.33 ? O3D NDP 601 D 1 
HETATM 33 C C2D NDP . . . R 2 230.865 -95.117 504.925 1 93.83 ? C2D NDP 601 D 1 
HETATM 34 O O2D NDP . . . R 2 230.754 -95.743 506.163 1 93.24 ? O2D NDP 601 D 1 
HETATM 35 C C1D NDP . . . R 2 229.724 -95.469 504.048 1 91.21 ? C1D NDP 601 D 1 
HETATM 36 N N1N NDP . . . R 2 230.089 -96.515 503.139 1 91.08 ? N1N NDP 601 D 1 
HETATM 37 C C2N NDP . . . R 2 229.194 -97.489 502.895 1 85.06 ? C2N NDP 601 D 1 
HETATM 38 C C3N NDP . . . R 2 229.489 -98.542 502.015 1 84.71 ? C3N NDP 601 D 1 
HETATM 39 C C7N NDP . . . R 2 228.447 -99.624 501.769 1 85.37 ? C7N NDP 601 D 1 
HETATM 40 O O7N NDP . . . R 2 228.673 -100.503 500.924 1 84.96 ? O7N NDP 601 D 1 
HETATM 41 N N7N NDP . . . R 2 227.206 -99.654 502.492 1 83.22 ? N7N NDP 601 D 1 
HETATM 42 C C4N NDP . . . R 2 230.742 -98.578 501.377 1 88.84 ? C4N NDP 601 D 1 
HETATM 43 C C5N NDP . . . R 2 231.65 -97.547 501.657 1 90.39 ? C5N NDP 601 D 1 
HETATM 44 C C6N NDP . . . R 2 231.317 -96.52 502.535 1 91.62 ? C6N NDP 601 D 1 
HETATM 45 P P2B NDP . . . R 2 239.489 -85.701 499.035 1 88.97 ? P2B NDP 601 D 1 
HETATM 46 O O1X NDP . . . R 2 239.238 -84.683 500.164 1 97.8 ? O1X NDP 601 D 1 
HETATM 47 O O2X NDP . . . R 2 240.829 -86.297 499.201 1 90.01 ? O2X NDP 601 D 1 
HETATM 48 O O3X NDP . . . R 2 239.424 -85.002 497.716 1 92.66 ? O3X NDP 601 D 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           48 
#