data_4KY8 # _model_server_result.job_id hGeXxDPgwb5XOF1beUhNHQ _model_server_result.datetime_utc '2024-11-04 22:59:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ky8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":601}' # _entry.id 4KY8 # _exptl.entry_id 4KY8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.36 _cell.angle_gamma 90 _cell.entry_id 4KY8 _cell.length_a 214.162 _cell.length_b 115.665 _cell.length_c 218.767 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KY8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,H,I,J,K,L,M 1 1 C,D,N,O,P,Q,R,S,T,U 2 1 E,V,W,X,Y 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 J N N ? 2 N N N ? 2 R N N ? 2 V N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 344 n n PA O2A NDP sing 345 n n PA O5B NDP sing 346 n n PA O3 NDP sing 347 n n O2A HOA2 NDP sing 348 n n O5B C5B NDP sing 349 n n C5B C4B NDP sing 350 n n C5B H51A NDP sing 351 n n C5B H52A NDP sing 352 n n C4B O4B NDP sing 353 n n C4B C3B NDP sing 354 n n C4B H4B NDP sing 355 n n O4B C1B NDP sing 356 n n C3B O3B NDP sing 357 n n C3B C2B NDP sing 358 n n C3B H3B NDP sing 359 n n O3B HO3A NDP sing 360 n n C2B O2B NDP sing 361 n n C2B C1B NDP sing 362 n n C2B H2B NDP sing 363 n n O2B P2B NDP sing 364 n n C1B N9A NDP sing 365 n n C1B H1B NDP sing 366 n n N9A C8A NDP sing 367 n y N9A C4A NDP sing 368 n y C8A N7A NDP doub 369 n y C8A H8A NDP sing 370 n n N7A C5A NDP sing 371 n y C5A C6A NDP sing 372 n y C5A C4A NDP doub 373 n y C6A N6A NDP sing 374 n n C6A N1A NDP doub 375 n y N6A H61A NDP sing 376 n n N6A H62A NDP sing 377 n n N1A C2A NDP sing 378 n y C2A N3A NDP doub 379 n y C2A H2A NDP sing 380 n n N3A C4A NDP sing 381 n y O3 PN NDP sing 382 n n PN O1N NDP doub 383 n n PN O2N NDP sing 384 n n PN O5D NDP sing 385 n n O2N H21N NDP sing 386 n n O5D C5D NDP sing 387 n n C5D C4D NDP sing 388 n n C5D H51N NDP sing 389 n n C5D H52N NDP sing 390 n n C4D O4D NDP sing 391 n n C4D C3D NDP sing 392 n n C4D H4D NDP sing 393 n n O4D C1D NDP sing 394 n n C3D O3D NDP sing 395 n n C3D C2D NDP sing 396 n n C3D H3D NDP sing 397 n n O3D HO3N NDP sing 398 n n C2D O2D NDP sing 399 n n C2D C1D NDP sing 400 n n C2D H2D NDP sing 401 n n O2D HO2N NDP sing 402 n n C1D N1N NDP sing 403 n n C1D H1D NDP sing 404 n n N1N C2N NDP sing 405 n n N1N C6N NDP sing 406 n n C2N C3N NDP doub 407 n n C2N H2N NDP sing 408 n n C3N C7N NDP sing 409 n n C3N C4N NDP sing 410 n n C7N O7N NDP doub 411 n n C7N N7N NDP sing 412 n n N7N H71N NDP sing 413 n n N7N H72N NDP sing 414 n n C4N C5N NDP sing 415 n n C4N H41N NDP sing 416 n n C4N H42N NDP sing 417 n n C5N C6N NDP doub 418 n n C5N H5N NDP sing 419 n n C6N H6N NDP sing 420 n n P2B O1X NDP doub 421 n n P2B O2X NDP sing 422 n n P2B O3X NDP sing 423 n n O2X HOP2 NDP sing 424 n n O3X HOP3 NDP sing 425 n n # _atom_sites.entry_id 4KY8 _atom_sites.fract_transf_matrix[1][1] 0.004669 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000356 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008646 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004584 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 NDP A 1 601 207 NDP NDP . G 3 UFP A 1 602 1 UFP UFP . H 4 MTX A 1 603 161 MTX MTX . I 5 1UF A 1 604 1 1UF 1UF . J 2 NDP B 1 601 207 NDP NDP . K 3 UFP B 1 602 1 UFP UFP . L 4 MTX B 1 603 161 MTX MTX . M 5 1UF B 1 604 1 1UF 1UF . N 2 NDP C 1 601 207 NDP NDP . O 3 UFP C 1 602 1 UFP UFP . P 4 MTX C 1 603 161 MTX MTX . Q 5 1UF C 1 604 1 1UF 1UF . R 2 NDP D 1 601 207 NDP NDP . S 3 UFP D 1 602 1 UFP UFP . T 4 MTX D 1 603 161 MTX MTX . U 5 1UF D 1 604 1 1UF 1UF . V 2 NDP E 1 601 207 NDP NDP . W 3 UFP E 1 602 1 UFP UFP . X 4 MTX E 1 603 161 MTX MTX . Y 5 1UF E 1 604 1 1UF 1UF . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . V 2 281.427 -58.054 474.208 1 96.42 ? PA NDP 601 E 1 HETATM 2 O O1A NDP . . . V 2 280.389 -57.759 473.146 1 92.57 ? O1A NDP 601 E 1 HETATM 3 O O2A NDP . . . V 2 282.681 -58.572 473.563 1 101.39 ? O2A NDP 601 E 1 HETATM 4 O O5B NDP . . . V 2 281.748 -56.766 474.973 1 100.66 ? O5B NDP 601 E 1 HETATM 5 C C5B NDP . . . V 2 280.745 -55.809 475.162 1 98.88 ? C5B NDP 601 E 1 HETATM 6 C C4B NDP . . . V 2 281.147 -54.534 475.774 1 103.74 ? C4B NDP 601 E 1 HETATM 7 O O4B NDP . . . V 2 281.197 -53.516 474.8 1 103.28 ? O4B NDP 601 E 1 HETATM 8 C C3B NDP . . . V 2 280.17 -54.085 476.765 1 105.08 ? C3B NDP 601 E 1 HETATM 9 O O3B NDP . . . V 2 280.474 -54.597 478.015 1 107.07 ? O3B NDP 601 E 1 HETATM 10 C C2B NDP . . . V 2 280.305 -52.648 476.75 1 106.14 ? C2B NDP 601 E 1 HETATM 11 O O2B NDP . . . V 2 281.316 -52.247 477.631 1 107.34 ? O2B NDP 601 E 1 HETATM 12 C C1B NDP . . . V 2 280.694 -52.328 475.384 1 104.32 ? C1B NDP 601 E 1 HETATM 13 N N9A NDP . . . V 2 279.566 -51.883 474.64 1 107.79 ? N9A NDP 601 E 1 HETATM 14 C C8A NDP . . . V 2 278.791 -52.656 473.841 1 102.97 ? C8A NDP 601 E 1 HETATM 15 N N7A NDP . . . V 2 277.818 -51.899 473.296 1 101.27 ? N7A NDP 601 E 1 HETATM 16 C C5A NDP . . . V 2 277.967 -50.609 473.75 1 105.29 ? C5A NDP 601 E 1 HETATM 17 C C6A NDP . . . V 2 277.271 -49.39 473.539 1 104.66 ? C6A NDP 601 E 1 HETATM 18 N N6A NDP . . . V 2 276.088 -49.36 472.641 1 113.03 ? N6A NDP 601 E 1 HETATM 19 N N1A NDP . . . V 2 277.684 -48.249 474.157 1 104.57 ? N1A NDP 601 E 1 HETATM 20 C C2A NDP . . . V 2 278.769 -48.287 474.978 1 106.37 ? C2A NDP 601 E 1 HETATM 21 N N3A NDP . . . V 2 279.456 -49.412 475.206 1 105.9 ? N3A NDP 601 E 1 HETATM 22 C C4A NDP . . . V 2 279.076 -50.601 474.601 1 105.46 ? C4A NDP 601 E 1 HETATM 23 O O3 NDP . . . V 2 280.881 -59.139 475.232 1 103.83 ? O3 NDP 601 E 1 HETATM 24 P PN NDP . . . V 2 280.132 -60.44 474.722 1 105.16 ? PN NDP 601 E 1 HETATM 25 O O1N NDP . . . V 2 279.712 -61.29 475.925 1 106.53 ? O1N NDP 601 E 1 HETATM 26 O O2N NDP . . . V 2 278.903 -60.045 473.93 1 95.48 ? O2N NDP 601 E 1 HETATM 27 O O5D NDP . . . V 2 281.137 -61.301 473.791 1 101.39 ? O5D NDP 601 E 1 HETATM 28 C C5D NDP . . . V 2 282.178 -62.03 474.382 1 104.83 ? C5D NDP 601 E 1 HETATM 29 C C4D NDP . . . V 2 281.995 -63.466 474.518 1 111.83 ? C4D NDP 601 E 1 HETATM 30 O O4D NDP . . . V 2 282.004 -64.081 473.231 1 107.18 ? O4D NDP 601 E 1 HETATM 31 C C3D NDP . . . V 2 283.097 -64.073 475.273 1 102.6 ? C3D NDP 601 E 1 HETATM 32 O O3D NDP . . . V 2 282.64 -65.193 475.959 1 100.63 ? O3D NDP 601 E 1 HETATM 33 C C2D NDP . . . V 2 284.034 -64.468 474.274 1 106.13 ? C2D NDP 601 E 1 HETATM 34 O O2D NDP . . . V 2 284.71 -65.614 474.684 1 105.54 ? O2D NDP 601 E 1 HETATM 35 C C1D NDP . . . V 2 283.217 -64.742 473.069 1 103.51 ? C1D NDP 601 E 1 HETATM 36 N N1N NDP . . . V 2 283.898 -64.308 471.885 1 103.38 ? N1N NDP 601 E 1 HETATM 37 C C2N NDP . . . V 2 283.986 -65.158 470.847 1 97.36 ? C2N NDP 601 E 1 HETATM 38 C C3N NDP . . . V 2 284.639 -64.793 469.659 1 97.01 ? C3N NDP 601 E 1 HETATM 39 C C7N NDP . . . V 2 284.716 -65.788 468.508 1 97.67 ? C7N NDP 601 E 1 HETATM 40 O O7N NDP . . . V 2 285.216 -65.431 467.431 1 97.26 ? O7N NDP 601 E 1 HETATM 41 N N7N NDP . . . V 2 284.227 -67.133 468.634 1 95.52 ? N7N NDP 601 E 1 HETATM 42 C C4N NDP . . . V 2 285.213 -63.512 469.554 1 101.14 ? C4N NDP 601 E 1 HETATM 43 C C5N NDP . . . V 2 285.103 -62.653 470.656 1 102.69 ? C5N NDP 601 E 1 HETATM 44 C C6N NDP . . . V 2 284.445 -63.056 471.815 1 103.92 ? C6N NDP 601 E 1 HETATM 45 P P2B NDP . . . V 2 280.987 -51.53 478.98 1 101.27 ? P2B NDP 601 E 1 HETATM 46 O O1X NDP . . . V 2 281.305 -52.477 480.153 1 110.1 ? O1X NDP 601 E 1 HETATM 47 O O2X NDP . . . V 2 281.817 -50.315 479.093 1 102.31 ? O2X NDP 601 E 1 HETATM 48 O O3X NDP . . . V 2 279.545 -51.143 479.038 1 104.96 ? O3X NDP 601 E 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #