data_4KY8 # _model_server_result.job_id dbSm1hGxhDY0ojKMRNEKVg _model_server_result.datetime_utc '2024-11-04 23:00:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ky8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":603}' # _entry.id 4KY8 # _exptl.entry_id 4KY8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 454.439 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description METHOTREXATE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.36 _cell.angle_gamma 90 _cell.entry_id 4KY8 _cell.length_a 214.162 _cell.length_b 115.665 _cell.length_c 218.767 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KY8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,H,I,J,K,L,M 1 1 C,D,N,O,P,Q,R,S,T,U 2 1 E,V,W,X,Y 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 L N N ? 4 P N N ? 4 T N N ? 4 X N N # _chem_comp.formula 'C20 H22 N8 O5' _chem_comp.formula_weight 454.439 _chem_comp.id MTX _chem_comp.mon_nstd_flag . _chem_comp.name METHOTREXATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 MTX doub 287 n y N1 C8A MTX sing 288 n y C2 NA2 MTX sing 289 n n C2 N3 MTX sing 290 n y NA2 HN21 MTX sing 291 n n NA2 HN22 MTX sing 292 n n N3 C4 MTX doub 293 n y C4 NA4 MTX sing 294 n n C4 C4A MTX sing 295 n y NA4 HN41 MTX sing 296 n n NA4 HN42 MTX sing 297 n n C4A N5 MTX sing 298 n y C4A C8A MTX doub 299 n y N5 C6 MTX doub 300 n y C6 C7 MTX sing 301 n y C6 C9 MTX sing 302 n n C7 N8 MTX doub 303 n y C7 H7 MTX sing 304 n n N8 C8A MTX sing 305 n y C9 N10 MTX sing 306 n n C9 H91 MTX sing 307 n n C9 H92 MTX sing 308 n n N10 CM MTX sing 309 n n N10 C14 MTX sing 310 n n CM HM1 MTX sing 311 n n CM HM2 MTX sing 312 n n CM HM3 MTX sing 313 n n C11 C12 MTX doub 314 n y C11 C16 MTX sing 315 n y C11 C MTX sing 316 n n C12 C13 MTX sing 317 n y C12 H12 MTX sing 318 n n C13 C14 MTX doub 319 n y C13 H13 MTX sing 320 n n C14 C15 MTX sing 321 n y C15 C16 MTX doub 322 n y C15 H15 MTX sing 323 n n C16 H16 MTX sing 324 n n C O MTX doub 325 n n C N MTX sing 326 n n N CA MTX sing 327 n n N HN MTX sing 328 n n CA CT MTX sing 329 n n CA CB MTX sing 330 n n CA HA MTX sing 331 n n CT O1 MTX doub 332 n n CT O2 MTX sing 333 n n O2 HO2 MTX sing 334 n n CB CG MTX sing 335 n n CB HB1 MTX sing 336 n n CB HB2 MTX sing 337 n n CG CD MTX sing 338 n n CG HG1 MTX sing 339 n n CG HG2 MTX sing 340 n n CD OE1 MTX doub 341 n n CD OE2 MTX sing 342 n n OE2 HOE2 MTX sing 343 n n # _atom_sites.entry_id 4KY8 _atom_sites.fract_transf_matrix[1][1] 0.004669 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000356 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008646 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004584 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 NDP A 1 601 207 NDP NDP . G 3 UFP A 1 602 1 UFP UFP . H 4 MTX A 1 603 161 MTX MTX . I 5 1UF A 1 604 1 1UF 1UF . J 2 NDP B 1 601 207 NDP NDP . K 3 UFP B 1 602 1 UFP UFP . L 4 MTX B 1 603 161 MTX MTX . M 5 1UF B 1 604 1 1UF 1UF . N 2 NDP C 1 601 207 NDP NDP . O 3 UFP C 1 602 1 UFP UFP . P 4 MTX C 1 603 161 MTX MTX . Q 5 1UF C 1 604 1 1UF 1UF . R 2 NDP D 1 601 207 NDP NDP . S 3 UFP D 1 602 1 UFP UFP . T 4 MTX D 1 603 161 MTX MTX . U 5 1UF D 1 604 1 1UF 1UF . V 2 NDP E 1 601 207 NDP NDP . W 3 UFP E 1 602 1 UFP UFP . X 4 MTX E 1 603 161 MTX MTX . Y 5 1UF E 1 604 1 1UF 1UF . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 MTX . . . X 4 288.356 -67.147 465.773 1 97.39 ? N1 MTX 603 E 1 HETATM 2 C C2 MTX . . . X 4 288.061 -66.602 464.58 1 95.95 ? C2 MTX 603 E 1 HETATM 3 N NA2 MTX . . . X 4 287.994 -67.455 463.425 1 101.43 ? NA2 MTX 603 E 1 HETATM 4 N N3 MTX . . . X 4 287.826 -65.29 464.428 1 99.79 ? N3 MTX 603 E 1 HETATM 5 C C4 MTX . . . X 4 287.88 -64.46 465.492 1 98.17 ? C4 MTX 603 E 1 HETATM 6 N NA4 MTX . . . X 4 287.63 -63.063 465.328 1 93.97 ? NA4 MTX 603 E 1 HETATM 7 C C4A MTX . . . X 4 288.188 -64.985 466.774 1 98.12 ? C4A MTX 603 E 1 HETATM 8 N N5 MTX . . . X 4 288.256 -64.19 467.886 1 104.84 ? N5 MTX 603 E 1 HETATM 9 C C6 MTX . . . X 4 288.551 -64.748 469.083 1 100.05 ? C6 MTX 603 E 1 HETATM 10 C C7 MTX . . . X 4 288.792 -66.119 469.209 1 104.12 ? C7 MTX 603 E 1 HETATM 11 N N8 MTX . . . X 4 288.721 -66.891 468.102 1 97.65 ? N8 MTX 603 E 1 HETATM 12 C C8A MTX . . . X 4 288.421 -66.344 466.881 1 96.1 ? C8A MTX 603 E 1 HETATM 13 C C9 MTX . . . X 4 288.629 -63.864 470.309 1 98.92 ? C9 MTX 603 E 1 HETATM 14 N N10 MTX . . . X 4 289.671 -64.13 471.286 1 110.55 ? N10 MTX 603 E 1 HETATM 15 C CM MTX . . . X 4 289.338 -64.228 472.684 1 107.38 ? CM MTX 603 E 1 HETATM 16 C C11 MTX . . . X 4 293.688 -64.667 470.027 1 101.15 ? C11 MTX 603 E 1 HETATM 17 C C12 MTX . . . X 4 293.189 -65.385 471.112 1 99.92 ? C12 MTX 603 E 1 HETATM 18 C C13 MTX . . . X 4 291.871 -65.206 471.523 1 100.69 ? C13 MTX 603 E 1 HETATM 19 C C14 MTX . . . X 4 291.049 -64.31 470.853 1 100.64 ? C14 MTX 603 E 1 HETATM 20 C C15 MTX . . . X 4 291.546 -63.592 469.769 1 95.64 ? C15 MTX 603 E 1 HETATM 21 C C16 MTX . . . X 4 292.864 -63.773 469.356 1 100.45 ? C16 MTX 603 E 1 HETATM 22 C C MTX . . . X 4 295.116 -64.851 469.567 1 101.49 ? C MTX 603 E 1 HETATM 23 O O MTX . . . X 4 295.834 -65.638 470.163 1 104.94 ? O MTX 603 E 1 HETATM 24 N N MTX . . . X 4 295.648 -64.121 468.434 1 104.9 ? N MTX 603 E 1 HETATM 25 C CA MTX . . . X 4 297.014 -64.321 468.018 1 109.83 ? CA MTX 603 E 1 HETATM 26 C CT MTX . . . X 4 297.422 -63.195 467.146 1 106.69 ? CT MTX 603 E 1 HETATM 27 O O1 MTX . . . X 4 296.647 -62.217 466.983 1 102.16 ? O1 MTX 603 E 1 HETATM 28 O O2 MTX . . . X 4 298.548 -63.218 466.564 1 104.94 ? O2 MTX 603 E 1 HETATM 29 C CB MTX . . . X 4 297.133 -65.598 467.254 1 110.46 ? CB MTX 603 E 1 HETATM 30 C CG MTX . . . X 4 298.384 -66.407 467.435 1 112.52 ? CG MTX 603 E 1 HETATM 31 C CD MTX . . . X 4 298.253 -67.896 467.42 1 121.31 ? CD MTX 603 E 1 HETATM 32 O OE1 MTX . . . X 4 297.39 -68.459 468.139 1 123.58 ? OE1 MTX 603 E 1 HETATM 33 O OE2 MTX . . . X 4 299.002 -68.582 466.691 1 122.92 ? OE2 MTX 603 E 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 33 #