data_4KY8
#
_model_server_result.job_id            1gSLmV8_ZHwankAxjbWpbA 
_model_server_result.datetime_utc      '2024-11-29 07:09:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ky8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Y","auth_seq_id":604}' 
#
_entry.id    4KY8 
#
_exptl.entry_id    4KY8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              479.894 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'N-{4-[(2-amino-6-methyl-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)sulfanyl]-2-chlorobenzoyl}-L-glutamic acid' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.36 
_cell.angle_gamma         90 
_cell.entry_id            4KY8 
_cell.length_a            214.162 
_cell.length_b            115.665 
_cell.length_c            218.767 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4KY8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA monomeric 1 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,F,G,H,I,J,K,L,M 1 1 
C,D,N,O,P,Q,R,S,T,U 2 1 
E,V,W,X,Y 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 M N N 
? 5 Q N N 
? 5 U N N 
? 5 Y N N 
#
_chem_comp.formula           'C19 H18 Cl N5 O6 S' 
_chem_comp.formula_weight    479.894 
_chem_comp.id                1UF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'N-{4-[(2-amino-6-methyl-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)sulfanyl]-2-chlorobenzoyl}-L-glutamic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAJ CAK 1UF doub 1 n y 
CAJ CAY 1UF sing 2 n y 
OXT C 1UF doub 3 n n 
CAK CBA 1UF sing 4 n y 
SAS CAY 1UF sing 5 n n 
SAS CBB 1UF sing 6 n n 
CG CD 1UF sing 7 n n 
CG CB 1UF sing 8 n n 
CAY CAL 1UF doub 9 n y 
N CA 1UF sing 10 n n 
N CAV 1UF sing 11 n n 
OE2 CD 1UF doub 12 n n 
C CA 1UF sing 13 n n 
C O 1UF sing 14 n n 
CD OE1 1UF sing 15 n n 
CA CB 1UF sing 16 n n 
OAF CBC 1UF doub 17 n n 
CBA CAV 1UF sing 18 n n 
CBA CAZ 1UF doub 19 n y 
CAV OAE 1UF doub 20 n n 
CBB CBE 1UF sing 21 n y 
CBB CAX 1UF doub 22 n y 
CAL CAZ 1UF sing 23 n y 
CBC CBE 1UF sing 24 n n 
CBC NAQ 1UF sing 25 n n 
CAA CAX 1UF sing 26 n n 
CAZ CL1 1UF sing 27 n n 
CBE CBD 1UF doub 28 n y 
CAX NAR 1UF sing 29 n y 
NAQ CAW 1UF sing 30 n n 
CBD NAR 1UF sing 31 n y 
CBD NAO 1UF sing 32 n n 
CAW NAO 1UF doub 33 n n 
CAW NAB 1UF sing 34 n n 
OE1 H1 1UF sing 35 n n 
CG H2 1UF sing 36 n n 
CG H3 1UF sing 37 n n 
CB H4 1UF sing 38 n n 
CB H5 1UF sing 39 n n 
CA H6 1UF sing 40 n n 
O H7 1UF sing 41 n n 
N H8 1UF sing 42 n n 
CAL H9 1UF sing 43 n n 
CAK H10 1UF sing 44 n n 
CAJ H11 1UF sing 45 n n 
NAQ H12 1UF sing 46 n n 
NAB H13 1UF sing 47 n n 
NAB H14 1UF sing 48 n n 
NAR H15 1UF sing 49 n n 
CAA H16 1UF sing 50 n n 
CAA H17 1UF sing 51 n n 
CAA H18 1UF sing 52 n n 
#
_atom_sites.entry_id                     4KY8 
_atom_sites.fract_transf_matrix[1][1]    0.004669 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000356 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008646 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004584 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 NDP A 1 601 207 NDP NDP . 
G 3 UFP A 1 602 1 UFP UFP . 
H 4 MTX A 1 603 161 MTX MTX . 
I 5 1UF A 1 604 1 1UF 1UF . 
J 2 NDP B 1 601 207 NDP NDP . 
K 3 UFP B 1 602 1 UFP UFP . 
L 4 MTX B 1 603 161 MTX MTX . 
M 5 1UF B 1 604 1 1UF 1UF . 
N 2 NDP C 1 601 207 NDP NDP . 
O 3 UFP C 1 602 1 UFP UFP . 
P 4 MTX C 1 603 161 MTX MTX . 
Q 5 1UF C 1 604 1 1UF 1UF . 
R 2 NDP D 1 601 207 NDP NDP . 
S 3 UFP D 1 602 1 UFP UFP . 
T 4 MTX D 1 603 161 MTX MTX . 
U 5 1UF D 1 604 1 1UF 1UF . 
V 2 NDP E 1 601 207 NDP NDP . 
W 3 UFP E 1 602 1 UFP UFP . 
X 4 MTX E 1 603 161 MTX MTX . 
Y 5 1UF E 1 604 1 1UF 1UF . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OE1 1UF . . . Y 5 268.012 -98.433 454.479 1 142.64 ? OE1 1UF 604 E 1 
HETATM 2 C CD 1UF . . . Y 5 268.592 -97.439 454.99 1 144.11 ? CD 1UF 604 E 1 
HETATM 3 O OE2 1UF . . . Y 5 268.366 -97.127 456.188 1 140.43 ? OE2 1UF 604 E 1 
HETATM 4 C CG 1UF . . . Y 5 269.551 -96.633 454.181 1 146.56 ? CG 1UF 604 E 1 
HETATM 5 C CB 1UF . . . Y 5 269.184 -95.26 453.721 1 149.45 ? CB 1UF 604 E 1 
HETATM 6 C CA 1UF . . . Y 5 268.554 -95.028 452.387 1 157 ? CA 1UF 604 E 1 
HETATM 7 C C 1UF . . . Y 5 268.575 -93.562 452.097 1 148.85 ? C 1UF 604 E 1 
HETATM 8 O O 1UF . . . Y 5 267.553 -92.859 452.314 1 146.34 ? O 1UF 604 E 1 
HETATM 9 O OXT 1UF . . . Y 5 269.618 -93.027 451.635 1 147.07 ? OXT 1UF 604 E 1 
HETATM 10 N N 1UF . . . Y 5 269.282 -95.704 451.356 1 162.81 ? N 1UF 604 E 1 
HETATM 11 C CAV 1UF . . . Y 5 269.069 -97.09 451.067 1 156.55 ? CAV 1UF 604 E 1 
HETATM 12 O OAE 1UF . . . Y 5 268.256 -97.74 451.708 1 160.42 ? OAE 1UF 604 E 1 
HETATM 13 C CBA 1UF . . . Y 5 269.858 -97.738 449.977 1 147.62 ? CBA 1UF 604 E 1 
HETATM 14 C CAZ 1UF . . . Y 5 269.211 -98.254 448.861 1 147.73 ? CAZ 1UF 604 E 1 
HETATM 15 CL CL1 1UF . . . Y 5 267.491 -98.155 448.744 1 170.29 ? CL1 1UF 604 E 1 
HETATM 16 C CAL 1UF . . . Y 5 269.943 -98.853 447.846 1 142.13 ? CAL 1UF 604 E 1 
HETATM 17 C CAK 1UF . . . Y 5 271.241 -97.813 450.083 1 143.28 ? CAK 1UF 604 E 1 
HETATM 18 C CAJ 1UF . . . Y 5 271.967 -98.413 449.063 1 141.33 ? CAJ 1UF 604 E 1 
HETATM 19 C CAY 1UF . . . Y 5 271.32 -98.929 447.955 1 142.2 ? CAY 1UF 604 E 1 
HETATM 20 S SAS 1UF . . . Y 5 272.267 -99.685 446.669 1 143.06 ? SAS 1UF 604 E 1 
HETATM 21 C CBB 1UF . . . Y 5 271.215 -100.62 445.599 1 138.86 ? CBB 1UF 604 E 1 
HETATM 22 C CBE 1UF . . . Y 5 270.417 -100.08 444.548 1 139.7 ? CBE 1UF 604 E 1 
HETATM 23 C CBC 1UF . . . Y 5 270.213 -98.747 444.058 1 138.56 ? CBC 1UF 604 E 1 
HETATM 24 O OAF 1UF . . . Y 5 270.868 -97.684 444.633 1 140.92 ? OAF 1UF 604 E 1 
HETATM 25 N NAQ 1UF . . . Y 5 269.347 -98.527 442.988 1 135.08 ? NAQ 1UF 604 E 1 
HETATM 26 C CAW 1UF . . . Y 5 268.653 -99.651 442.379 1 140.17 ? CAW 1UF 604 E 1 
HETATM 27 N NAB 1UF . . . Y 5 267.759 -99.453 441.281 1 148.92 ? NAB 1UF 604 E 1 
HETATM 28 N NAO 1UF . . . Y 5 268.886 -100.934 442.897 1 142.58 ? NAO 1UF 604 E 1 
HETATM 29 C CBD 1UF . . . Y 5 269.746 -101.142 443.955 1 140.59 ? CBD 1UF 604 E 1 
HETATM 30 N NAR 1UF . . . Y 5 270.116 -102.327 444.618 1 147.06 ? NAR 1UF 604 E 1 
HETATM 31 C CAX 1UF . . . Y 5 271.016 -101.99 445.622 1 140.76 ? CAX 1UF 604 E 1 
HETATM 32 C CAA 1UF . . . Y 5 271.656 -102.955 446.562 1 136.09 ? CAA 1UF 604 E 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           32 
#