data_4KYA
#
_model_server_result.job_id            Rp59E_bdqd5CkyIgVC22Kg 
_model_server_result.datetime_utc      '2025-06-25 11:41:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4kya 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"JA","auth_seq_id":704}' 
#
_entry.id    4KYA 
#
_exptl.entry_id    4KYA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90.07 
_cell.angle_beta          89.96 
_cell.angle_gamma         90.07 
_cell.entry_id            4KYA 
_cell.length_a            53.531 
_cell.length_b            145.079 
_cell.length_c            176.614 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4KYA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,J,K,L,M,N,O,P 1 1 
C,D,Q,R,S,T,U,V,W,X 2 1 
E,F,Y,Z,AA,BA,CA,DA,EA,FA 3 1 
G,H,GA,HA,IA,JA,KA,LA,MA,NA 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 L N N 
? 5 P N N 
? 5 T N N 
? 5 X N N 
? 5 BA N N 
? 5 FA N N 
? 5 JA N N 
? 5 NA N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 332 n n 
PA O2A NDP sing 333 n n 
PA O5B NDP sing 334 n n 
PA O3 NDP sing 335 n n 
O2A HOA2 NDP sing 336 n n 
O5B C5B NDP sing 337 n n 
C5B C4B NDP sing 338 n n 
C5B H51A NDP sing 339 n n 
C5B H52A NDP sing 340 n n 
C4B O4B NDP sing 341 n n 
C4B C3B NDP sing 342 n n 
C4B H4B NDP sing 343 n n 
O4B C1B NDP sing 344 n n 
C3B O3B NDP sing 345 n n 
C3B C2B NDP sing 346 n n 
C3B H3B NDP sing 347 n n 
O3B HO3A NDP sing 348 n n 
C2B O2B NDP sing 349 n n 
C2B C1B NDP sing 350 n n 
C2B H2B NDP sing 351 n n 
O2B P2B NDP sing 352 n n 
C1B N9A NDP sing 353 n n 
C1B H1B NDP sing 354 n n 
N9A C8A NDP sing 355 n y 
N9A C4A NDP sing 356 n y 
C8A N7A NDP doub 357 n y 
C8A H8A NDP sing 358 n n 
N7A C5A NDP sing 359 n y 
C5A C6A NDP sing 360 n y 
C5A C4A NDP doub 361 n y 
C6A N6A NDP sing 362 n n 
C6A N1A NDP doub 363 n y 
N6A H61A NDP sing 364 n n 
N6A H62A NDP sing 365 n n 
N1A C2A NDP sing 366 n y 
C2A N3A NDP doub 367 n y 
C2A H2A NDP sing 368 n n 
N3A C4A NDP sing 369 n y 
O3 PN NDP sing 370 n n 
PN O1N NDP doub 371 n n 
PN O2N NDP sing 372 n n 
PN O5D NDP sing 373 n n 
O2N H21N NDP sing 374 n n 
O5D C5D NDP sing 375 n n 
C5D C4D NDP sing 376 n n 
C5D H51N NDP sing 377 n n 
C5D H52N NDP sing 378 n n 
C4D O4D NDP sing 379 n n 
C4D C3D NDP sing 380 n n 
C4D H4D NDP sing 381 n n 
O4D C1D NDP sing 382 n n 
C3D O3D NDP sing 383 n n 
C3D C2D NDP sing 384 n n 
C3D H3D NDP sing 385 n n 
O3D HO3N NDP sing 386 n n 
C2D O2D NDP sing 387 n n 
C2D C1D NDP sing 388 n n 
C2D H2D NDP sing 389 n n 
O2D HO2N NDP sing 390 n n 
C1D N1N NDP sing 391 n n 
C1D H1D NDP sing 392 n n 
N1N C2N NDP sing 393 n n 
N1N C6N NDP sing 394 n n 
C2N C3N NDP doub 395 n n 
C2N H2N NDP sing 396 n n 
C3N C7N NDP sing 397 n n 
C3N C4N NDP sing 398 n n 
C7N O7N NDP doub 399 n n 
C7N N7N NDP sing 400 n n 
N7N H71N NDP sing 401 n n 
N7N H72N NDP sing 402 n n 
C4N C5N NDP sing 403 n n 
C4N H41N NDP sing 404 n n 
C4N H42N NDP sing 405 n n 
C5N C6N NDP doub 406 n n 
C5N H5N NDP sing 407 n n 
C6N H6N NDP sing 408 n n 
P2B O1X NDP doub 409 n n 
P2B O2X NDP sing 410 n n 
P2B O3X NDP sing 411 n n 
O2X HOP2 NDP sing 412 n n 
O3X HOP3 NDP sing 413 n n 
#
_atom_sites.entry_id                     4KYA 
_atom_sites.fract_transf_matrix[1][1]    0.018681 
_atom_sites.fract_transf_matrix[1][2]    0.000023 
_atom_sites.fract_transf_matrix[1][3]    -0.000013 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006893 
_atom_sites.fract_transf_matrix[2][3]    0.000008 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005662 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 UMP A 1 701 701 UMP UMP . 
J 3 1UG A 1 702 702 1UG 1UG . 
K 4 FOL A 1 703 703 FOL FOL . 
L 5 NDP A 1 704 704 NDP NDP . 
M 2 UMP B 1 701 701 UMP UMP . 
N 3 1UG B 1 702 702 1UG 1UG . 
O 4 FOL B 1 703 703 FOL FOL . 
P 5 NDP B 1 704 704 NDP NDP . 
Q 2 UMP C 1 701 701 UMP UMP . 
R 3 1UG C 1 702 702 1UG 1UG . 
S 4 FOL C 1 703 703 FOL FOL . 
T 5 NDP C 1 704 704 NDP NDP . 
U 2 UMP D 1 701 701 UMP UMP . 
V 3 1UG D 1 702 702 1UG 1UG . 
W 4 FOL D 1 703 703 FOL FOL . 
X 5 NDP D 1 704 704 NDP NDP . 
Y 2 UMP E 1 701 701 UMP UMP . 
Z 3 1UG E 1 702 702 1UG 1UG . 
AA 4 FOL E 1 703 703 FOL FOL . 
BA 5 NDP E 1 704 704 NDP NDP . 
CA 2 UMP F 1 701 701 UMP UMP . 
DA 3 1UG F 1 702 702 1UG 1UG . 
EA 4 FOL F 1 703 703 FOL FOL . 
FA 5 NDP F 1 704 704 NDP NDP . 
GA 2 UMP G 1 701 701 UMP UMP . 
HA 3 1UG G 1 702 702 1UG 1UG . 
IA 4 FOL G 1 703 703 FOL FOL . 
JA 5 NDP G 1 704 704 NDP NDP . 
KA 2 UMP H 1 701 701 UMP UMP . 
LA 3 1UG H 1 702 702 1UG 1UG . 
MA 4 FOL H 1 703 703 FOL FOL . 
NA 5 NDP H 1 704 704 NDP NDP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . JA 5 28.126 109.666 10.231 1 28.68 ? PA NDP 704 G 1 
HETATM 2 O O1A NDP . . . JA 5 26.691 109.505 10.423 1 26.71 ? O1A NDP 704 G 1 
HETATM 3 O O2A NDP . . . JA 5 28.975 108.496 9.995 1 30.64 ? O2A NDP 704 G 1 
HETATM 4 O O5B NDP . . . JA 5 28.396 110.7 9.062 1 37.06 ? O5B NDP 704 G 1 
HETATM 5 C C5B NDP . . . JA 5 27.739 111.981 9.028 1 41 ? C5B NDP 704 G 1 
HETATM 6 C C4B NDP . . . JA 5 27.786 112.448 7.562 1 30.08 ? C4B NDP 704 G 1 
HETATM 7 O O4B NDP . . . JA 5 27.193 111.418 6.709 1 34.15 ? O4B NDP 704 G 1 
HETATM 8 C C3B NDP . . . JA 5 26.911 113.663 7.374 1 27.22 ? C3B NDP 704 G 1 
HETATM 9 O O3B NDP . . . JA 5 27.706 114.794 7.626 1 34.34 ? O3B NDP 704 G 1 
HETATM 10 C C2B NDP . . . JA 5 26.435 113.495 5.938 1 32.51 ? C2B NDP 704 G 1 
HETATM 11 O O2B NDP . . . JA 5 27.539 113.677 5.021 1 40.52 ? O2B NDP 704 G 1 
HETATM 12 C C1B NDP . . . JA 5 26.189 111.991 5.885 1 30.68 ? C1B NDP 704 G 1 
HETATM 13 N N9A NDP . . . JA 5 24.842 111.591 6.329 1 35.03 ? N9A NDP 704 G 1 
HETATM 14 C C8A NDP . . . JA 5 24.564 110.851 7.424 1 38.38 ? C8A NDP 704 G 1 
HETATM 15 N N7A NDP . . . JA 5 23.238 110.644 7.574 1 44.38 ? N7A NDP 704 G 1 
HETATM 16 C C5A NDP . . . JA 5 22.645 111.267 6.547 1 38.34 ? C5A NDP 704 G 1 
HETATM 17 C C6A NDP . . . JA 5 21.258 111.444 6.103 1 45.89 ? C6A NDP 704 G 1 
HETATM 18 N N6A NDP . . . JA 5 20.252 110.893 6.819 1 51.42 ? N6A NDP 704 G 1 
HETATM 19 N N1A NDP . . . JA 5 21.046 112.166 4.972 1 56.11 ? N1A NDP 704 G 1 
HETATM 20 C C2A NDP . . . JA 5 22.046 112.715 4.258 1 44.1 ? C2A NDP 704 G 1 
HETATM 21 N N3A NDP . . . JA 5 23.331 112.584 4.619 1 39.53 ? N3A NDP 704 G 1 
HETATM 22 C C4A NDP . . . JA 5 23.692 111.887 5.729 1 40.54 ? C4A NDP 704 G 1 
HETATM 23 O O3 NDP . . . JA 5 28.829 110.531 11.394 1 27.55 ? O3 NDP 704 G 1 
HETATM 24 P PN NDP . . . JA 5 28.47 110.49 12.982 1 36.27 ? PN NDP 704 G 1 
HETATM 25 O O1N NDP . . . JA 5 27.027 110.373 13.282 1 21.26 ? O1N NDP 704 G 1 
HETATM 26 O O2N NDP . . . JA 5 29.345 111.545 13.614 1 34.8 ? O2N NDP 704 G 1 
HETATM 27 O O5D NDP . . . JA 5 29.159 109.123 13.423 1 30.5 ? O5D NDP 704 G 1 
HETATM 28 C C5D NDP . . . JA 5 30.585 108.987 13.392 1 33.46 ? C5D NDP 704 G 1 
HETATM 29 C C4D NDP . . . JA 5 31.055 108.779 14.824 1 34.39 ? C4D NDP 704 G 1 
HETATM 30 O O4D NDP . . . JA 5 30.451 107.575 15.285 1 33.57 ? O4D NDP 704 G 1 
HETATM 31 C C3D NDP . . . JA 5 32.533 108.518 14.877 1 26.13 ? C3D NDP 704 G 1 
HETATM 32 O O3D NDP . . . JA 5 32.977 108.86 16.172 1 26.38 ? O3D NDP 704 G 1 
HETATM 33 C C2D NDP . . . JA 5 32.602 107.04 14.687 1 25.92 ? C2D NDP 704 G 1 
HETATM 34 O O2D NDP . . . JA 5 33.853 106.533 15.07 1 32.27 ? O2D NDP 704 G 1 
HETATM 35 C C1D NDP . . . JA 5 31.453 106.574 15.517 1 28.24 ? C1D NDP 704 G 1 
HETATM 36 N N1N NDP . . . JA 5 30.874 105.304 15.133 1 26.18 ? N1N NDP 704 G 1 
HETATM 37 C C2N NDP . . . JA 5 30.701 104.379 16.087 1 24.18 ? C2N NDP 704 G 1 
HETATM 38 C C3N NDP . . . JA 5 30.151 103.14 15.809 1 31.52 ? C3N NDP 704 G 1 
HETATM 39 C C7N NDP . . . JA 5 29.976 102.133 16.919 1 26.74 ? C7N NDP 704 G 1 
HETATM 40 O O7N NDP . . . JA 5 29.296 101.149 16.725 1 25.51 ? O7N NDP 704 G 1 
HETATM 41 N N7N NDP . . . JA 5 30.575 102.362 18.084 1 23.05 ? N7N NDP 704 G 1 
HETATM 42 C C4N NDP . . . JA 5 29.717 102.788 14.402 1 39.04 ? C4N NDP 704 G 1 
HETATM 43 C C5N NDP . . . JA 5 29.961 103.874 13.473 1 29.78 ? C5N NDP 704 G 1 
HETATM 44 C C6N NDP . . . JA 5 30.518 105.063 13.881 1 28.19 ? C6N NDP 704 G 1 
HETATM 45 P P2B NDP . . . JA 5 27.97 115.052 4.35 1 37.04 ? P2B NDP 704 G 1 
HETATM 46 O O1X NDP . . . JA 5 29.256 114.681 3.691 1 34.02 ? O1X NDP 704 G 1 
HETATM 47 O O2X NDP . . . JA 5 26.795 115.36 3.471 1 26.99 ? O2X NDP 704 G 1 
HETATM 48 O O3X NDP . . . JA 5 28.226 116.112 5.408 1 37.35 ? O3X NDP 704 G 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    39 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           48 
#