data_4KYA
#
_model_server_result.job_id            lZ67ySpxNY2AYr1OAisNZQ 
_model_server_result.datetime_utc      '2024-11-12 21:09:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4kya 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":704}' 
#
_entry.id    4KYA 
#
_exptl.entry_id    4KYA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90.07 
_cell.angle_beta          89.96 
_cell.angle_gamma         90.07 
_cell.entry_id            4KYA 
_cell.length_a            53.531 
_cell.length_b            145.079 
_cell.length_c            176.614 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4KYA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,J,K,L,M,N,O,P 1 1 
C,D,Q,R,S,T,U,V,W,X 2 1 
E,F,Y,Z,AA,BA,CA,DA,EA,FA 3 1 
G,H,GA,HA,IA,JA,KA,LA,MA,NA 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 L N N 
? 5 P N N 
? 5 T N N 
? 5 X N N 
? 5 BA N N 
? 5 FA N N 
? 5 JA N N 
? 5 NA N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 332 n n 
PA O2A NDP sing 333 n n 
PA O5B NDP sing 334 n n 
PA O3 NDP sing 335 n n 
O2A HOA2 NDP sing 336 n n 
O5B C5B NDP sing 337 n n 
C5B C4B NDP sing 338 n n 
C5B H51A NDP sing 339 n n 
C5B H52A NDP sing 340 n n 
C4B O4B NDP sing 341 n n 
C4B C3B NDP sing 342 n n 
C4B H4B NDP sing 343 n n 
O4B C1B NDP sing 344 n n 
C3B O3B NDP sing 345 n n 
C3B C2B NDP sing 346 n n 
C3B H3B NDP sing 347 n n 
O3B HO3A NDP sing 348 n n 
C2B O2B NDP sing 349 n n 
C2B C1B NDP sing 350 n n 
C2B H2B NDP sing 351 n n 
O2B P2B NDP sing 352 n n 
C1B N9A NDP sing 353 n n 
C1B H1B NDP sing 354 n n 
N9A C8A NDP sing 355 n y 
N9A C4A NDP sing 356 n y 
C8A N7A NDP doub 357 n y 
C8A H8A NDP sing 358 n n 
N7A C5A NDP sing 359 n y 
C5A C6A NDP sing 360 n y 
C5A C4A NDP doub 361 n y 
C6A N6A NDP sing 362 n n 
C6A N1A NDP doub 363 n y 
N6A H61A NDP sing 364 n n 
N6A H62A NDP sing 365 n n 
N1A C2A NDP sing 366 n y 
C2A N3A NDP doub 367 n y 
C2A H2A NDP sing 368 n n 
N3A C4A NDP sing 369 n y 
O3 PN NDP sing 370 n n 
PN O1N NDP doub 371 n n 
PN O2N NDP sing 372 n n 
PN O5D NDP sing 373 n n 
O2N H21N NDP sing 374 n n 
O5D C5D NDP sing 375 n n 
C5D C4D NDP sing 376 n n 
C5D H51N NDP sing 377 n n 
C5D H52N NDP sing 378 n n 
C4D O4D NDP sing 379 n n 
C4D C3D NDP sing 380 n n 
C4D H4D NDP sing 381 n n 
O4D C1D NDP sing 382 n n 
C3D O3D NDP sing 383 n n 
C3D C2D NDP sing 384 n n 
C3D H3D NDP sing 385 n n 
O3D HO3N NDP sing 386 n n 
C2D O2D NDP sing 387 n n 
C2D C1D NDP sing 388 n n 
C2D H2D NDP sing 389 n n 
O2D HO2N NDP sing 390 n n 
C1D N1N NDP sing 391 n n 
C1D H1D NDP sing 392 n n 
N1N C2N NDP sing 393 n n 
N1N C6N NDP sing 394 n n 
C2N C3N NDP doub 395 n n 
C2N H2N NDP sing 396 n n 
C3N C7N NDP sing 397 n n 
C3N C4N NDP sing 398 n n 
C7N O7N NDP doub 399 n n 
C7N N7N NDP sing 400 n n 
N7N H71N NDP sing 401 n n 
N7N H72N NDP sing 402 n n 
C4N C5N NDP sing 403 n n 
C4N H41N NDP sing 404 n n 
C4N H42N NDP sing 405 n n 
C5N C6N NDP doub 406 n n 
C5N H5N NDP sing 407 n n 
C6N H6N NDP sing 408 n n 
P2B O1X NDP doub 409 n n 
P2B O2X NDP sing 410 n n 
P2B O3X NDP sing 411 n n 
O2X HOP2 NDP sing 412 n n 
O3X HOP3 NDP sing 413 n n 
#
_atom_sites.entry_id                     4KYA 
_atom_sites.fract_transf_matrix[1][1]    0.018681 
_atom_sites.fract_transf_matrix[1][2]    0.000023 
_atom_sites.fract_transf_matrix[1][3]    -0.000013 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006893 
_atom_sites.fract_transf_matrix[2][3]    0.000008 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005662 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 UMP A 1 701 701 UMP UMP . 
J 3 1UG A 1 702 702 1UG 1UG . 
K 4 FOL A 1 703 703 FOL FOL . 
L 5 NDP A 1 704 704 NDP NDP . 
M 2 UMP B 1 701 701 UMP UMP . 
N 3 1UG B 1 702 702 1UG 1UG . 
O 4 FOL B 1 703 703 FOL FOL . 
P 5 NDP B 1 704 704 NDP NDP . 
Q 2 UMP C 1 701 701 UMP UMP . 
R 3 1UG C 1 702 702 1UG 1UG . 
S 4 FOL C 1 703 703 FOL FOL . 
T 5 NDP C 1 704 704 NDP NDP . 
U 2 UMP D 1 701 701 UMP UMP . 
V 3 1UG D 1 702 702 1UG 1UG . 
W 4 FOL D 1 703 703 FOL FOL . 
X 5 NDP D 1 704 704 NDP NDP . 
Y 2 UMP E 1 701 701 UMP UMP . 
Z 3 1UG E 1 702 702 1UG 1UG . 
AA 4 FOL E 1 703 703 FOL FOL . 
BA 5 NDP E 1 704 704 NDP NDP . 
CA 2 UMP F 1 701 701 UMP UMP . 
DA 3 1UG F 1 702 702 1UG 1UG . 
EA 4 FOL F 1 703 703 FOL FOL . 
FA 5 NDP F 1 704 704 NDP NDP . 
GA 2 UMP G 1 701 701 UMP UMP . 
HA 3 1UG G 1 702 702 1UG 1UG . 
IA 4 FOL G 1 703 703 FOL FOL . 
JA 5 NDP G 1 704 704 NDP NDP . 
KA 2 UMP H 1 701 701 UMP UMP . 
LA 3 1UG H 1 702 702 1UG 1UG . 
MA 4 FOL H 1 703 703 FOL FOL . 
NA 5 NDP H 1 704 704 NDP NDP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . L 5 1.512 -35.151 -11.042 1 24.89 ? PA NDP 704 A 1 
HETATM 2 O O1A NDP . . . L 5 0.078 -34.96 -11.211 1 27.94 ? O1A NDP 704 A 1 
HETATM 3 O O2A NDP . . . L 5 2.385 -33.996 -10.824 1 28.34 ? O2A NDP 704 A 1 
HETATM 4 O O5B NDP . . . L 5 1.778 -36.184 -9.871 1 34.42 ? O5B NDP 704 A 1 
HETATM 5 C C5B NDP . . . L 5 1.094 -37.45 -9.815 1 40.57 ? C5B NDP 704 A 1 
HETATM 6 C C4B NDP . . . L 5 1.188 -37.927 -8.353 1 37.06 ? C4B NDP 704 A 1 
HETATM 7 O O4B NDP . . . L 5 0.611 -36.907 -7.478 1 37.87 ? O4B NDP 704 A 1 
HETATM 8 C C3B NDP . . . L 5 0.334 -39.156 -8.145 1 35.56 ? C3B NDP 704 A 1 
HETATM 9 O O3B NDP . . . L 5 1.137 -40.283 -8.402 1 37.94 ? O3B NDP 704 A 1 
HETATM 10 C C2B NDP . . . L 5 -0.138 -38.988 -6.706 1 36.07 ? C2B NDP 704 A 1 
HETATM 11 O O2B NDP . . . L 5 0.965 -39.165 -5.789 1 37.92 ? O2B NDP 704 A 1 
HETATM 12 C C1B NDP . . . L 5 -0.387 -37.484 -6.65 1 34.57 ? C1B NDP 704 A 1 
HETATM 13 N N9A NDP . . . L 5 -1.738 -37.082 -7.081 1 35.29 ? N9A NDP 704 A 1 
HETATM 14 C C8A NDP . . . L 5 -2.021 -36.315 -8.155 1 36.3 ? C8A NDP 704 A 1 
HETATM 15 N N7A NDP . . . L 5 -3.348 -36.112 -8.301 1 40.61 ? N7A NDP 704 A 1 
HETATM 16 C C5A NDP . . . L 5 -3.937 -36.767 -7.293 1 30.9 ? C5A NDP 704 A 1 
HETATM 17 C C6A NDP . . . L 5 -5.323 -36.965 -6.856 1 40.46 ? C6A NDP 704 A 1 
HETATM 18 N N6A NDP . . . L 5 -6.331 -36.401 -7.559 1 52.85 ? N6A NDP 704 A 1 
HETATM 19 N N1A NDP . . . L 5 -5.533 -37.719 -5.746 1 56.35 ? N1A NDP 704 A 1 
HETATM 20 C C2A NDP . . . L 5 -4.53 -38.281 -5.045 1 42.74 ? C2A NDP 704 A 1 
HETATM 21 N N3A NDP . . . L 5 -3.246 -38.131 -5.4 1 38.2 ? N3A NDP 704 A 1 
HETATM 22 C C4A NDP . . . L 5 -2.887 -37.402 -6.491 1 39.34 ? C4A NDP 704 A 1 
HETATM 23 O O3 NDP . . . L 5 2.183 -36.037 -12.211 1 30.16 ? O3 NDP 704 A 1 
HETATM 24 P PN NDP . . . L 5 1.854 -35.978 -13.807 1 33.04 ? PN NDP 704 A 1 
HETATM 25 O O1N NDP . . . L 5 0.423 -35.816 -14.14 1 24.75 ? O1N NDP 704 A 1 
HETATM 26 O O2N NDP . . . L 5 2.708 -37.053 -14.429 1 34.72 ? O2N NDP 704 A 1 
HETATM 27 O O5D NDP . . . L 5 2.598 -34.633 -14.225 1 28.43 ? O5D NDP 704 A 1 
HETATM 28 C C5D NDP . . . L 5 4.028 -34.567 -14.199 1 32.17 ? C5D NDP 704 A 1 
HETATM 29 C C4D NDP . . . L 5 4.485 -34.315 -15.626 1 35.68 ? C4D NDP 704 A 1 
HETATM 30 O O4D NDP . . . L 5 3.844 -33.115 -16.041 1 39.61 ? O4D NDP 704 A 1 
HETATM 31 C C3D NDP . . . L 5 5.957 -34.019 -15.694 1 26.59 ? C3D NDP 704 A 1 
HETATM 32 O O3D NDP . . . L 5 6.395 -34.343 -16.996 1 26.38 ? O3D NDP 704 A 1 
HETATM 33 C C2D NDP . . . L 5 6.004 -32.541 -15.503 1 23.87 ? C2D NDP 704 A 1 
HETATM 34 O O2D NDP . . . L 5 7.228 -32.016 -15.94 1 27.43 ? O2D NDP 704 A 1 
HETATM 35 C C1D NDP . . . L 5 4.823 -32.097 -16.296 1 33 ? C1D NDP 704 A 1 
HETATM 36 N N1N NDP . . . L 5 4.23 -30.837 -15.903 1 26.18 ? N1N NDP 704 A 1 
HETATM 37 C C2N NDP . . . L 5 4.063 -29.909 -16.854 1 28.7 ? C2N NDP 704 A 1 
HETATM 38 C C3N NDP . . . L 5 3.501 -28.678 -16.578 1 34.96 ? C3N NDP 704 A 1 
HETATM 39 C C7N NDP . . . L 5 3.338 -27.67 -17.688 1 29.97 ? C7N NDP 704 A 1 
HETATM 40 O O7N NDP . . . L 5 2.684 -26.671 -17.486 1 31.39 ? O7N NDP 704 A 1 
HETATM 41 N N7N NDP . . . L 5 3.921 -27.914 -18.859 1 21.86 ? N7N NDP 704 A 1 
HETATM 42 C C4N NDP . . . L 5 3.046 -28.336 -15.176 1 39.82 ? C4N NDP 704 A 1 
HETATM 43 C C5N NDP . . . L 5 3.286 -29.425 -14.249 1 30.54 ? C5N NDP 704 A 1 
HETATM 44 C C6N NDP . . . L 5 3.856 -30.608 -14.653 1 26.8 ? C6N NDP 704 A 1 
HETATM 45 P P2B NDP . . . L 5 1.438 -40.546 -5.161 1 37.35 ? P2B NDP 704 A 1 
HETATM 46 O O1X NDP . . . L 5 2.692 -40.147 -4.46 1 34.09 ? O1X NDP 704 A 1 
HETATM 47 O O2X NDP . . . L 5 0.258 -40.941 -4.322 1 26.99 ? O2X NDP 704 A 1 
HETATM 48 O O3X NDP . . . L 5 1.762 -41.551 -6.255 1 36.57 ? O3X NDP 704 A 1 
#
_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    47 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           48 
#