data_4KYK # _model_server_result.job_id byGp6PnqT1KVbfvIEfOrsA _model_server_result.datetime_utc '2024-11-21 17:11:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kyk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":300}' # _entry.id 4KYK # _exptl.entry_id 4KYK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 357.788 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description INDOMETHACIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.39 _cell.angle_gamma 90 _cell.entry_id 4KYK _cell.length_a 41.865 _cell.length_b 65.396 _cell.length_c 64.912 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KYK _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 34 A GLN 34 1_555 D ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc2 A OE2 GLU 100 A GLU 100 1_555 D ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc3 A OE1 GLU 100 A GLU 100 1_555 D ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc4 A NE2 HIS 127 A HIS 127 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc5 A OE1 GLU 173 A GLU 173 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc6 C ZN ZN . A ZN 201 1_555 B OE1 GLN 34 B GLN 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc7 C ZN ZN . A ZN 201 1_555 B OE1 GLU 100 B GLU 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc8 C ZN ZN . A ZN 201 1_555 G O HOH . B HOH 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc9 D ZN ZN . A ZN 202 1_555 F O HOH . A HOH 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? metalc ? metalc10 D ZN ZN . A ZN 202 1_555 B NE2 HIS 127 B HIS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc11 D ZN ZN . A ZN 202 1_555 B OE2 GLU 173 B GLU 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? # _chem_comp.formula 'C19 H16 Cl N O4' _chem_comp.formula_weight 357.788 _chem_comp.id IMN _chem_comp.mon_nstd_flag . _chem_comp.name INDOMETHACIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 IMN doub 173 n y C C5 IMN sing 174 n y C N IMN sing 175 n y C1 C2 IMN sing 176 n y C1 C7 IMN sing 177 n y C2 C3 IMN doub 178 n y C2 H2 IMN sing 179 n n C3 C4 IMN sing 180 n y C3 O IMN sing 181 n n C4 C5 IMN doub 182 n y C4 H4 IMN sing 183 n n C5 H5 IMN sing 184 n n C6 O IMN sing 185 n n C6 H61 IMN sing 186 n n C6 H62 IMN sing 187 n n C6 H63 IMN sing 188 n n C7 C8 IMN doub 189 n y C7 C17 IMN sing 190 n n C8 C16 IMN sing 191 n n C8 N IMN sing 192 n y C9 C10 IMN sing 193 n n C9 N IMN sing 194 n n C9 O1 IMN doub 195 n n C10 C11 IMN doub 196 n y C10 C15 IMN sing 197 n y C11 C12 IMN sing 198 n y C11 H11 IMN sing 199 n n C12 C13 IMN doub 200 n y C12 H12 IMN sing 201 n n C13 C14 IMN sing 202 n y C13 CL IMN sing 203 n n C14 C15 IMN doub 204 n y C14 H14 IMN sing 205 n n C15 H15 IMN sing 206 n n C16 H161 IMN sing 207 n n C16 H162 IMN sing 208 n n C16 H163 IMN sing 209 n n C17 C18 IMN sing 210 n n C17 H171 IMN sing 211 n n C17 H172 IMN sing 212 n n C18 O2 IMN doub 213 n n C18 O3 IMN sing 214 n n O3 HO3 IMN sing 215 n n # _atom_sites.entry_id 4KYK _atom_sites.fract_transf_matrix[1][1] 0.023886 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004812 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015291 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015715 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 201 201 ZN ZN . D 2 ZN A 1 202 202 ZN ZN . E 3 IMN B 1 300 300 IMN IMN . F 4 HOH A 1 301 301 HOH HOH . F 4 HOH A 2 302 302 HOH HOH . F 4 HOH A 3 303 303 HOH HOH . F 4 HOH A 4 304 304 HOH HOH . F 4 HOH A 5 305 305 HOH HOH . F 4 HOH A 6 306 306 HOH HOH . F 4 HOH A 7 307 307 HOH HOH . F 4 HOH A 8 308 308 HOH HOH . F 4 HOH A 9 309 309 HOH HOH . F 4 HOH A 10 310 310 HOH HOH . F 4 HOH A 11 311 311 HOH HOH . F 4 HOH A 12 312 312 HOH HOH . F 4 HOH A 13 313 313 HOH HOH . F 4 HOH A 14 314 314 HOH HOH . F 4 HOH A 15 315 315 HOH HOH . F 4 HOH A 16 316 316 HOH HOH . F 4 HOH A 17 317 317 HOH HOH . F 4 HOH A 18 318 318 HOH HOH . F 4 HOH A 19 319 319 HOH HOH . F 4 HOH A 20 320 320 HOH HOH . F 4 HOH A 21 321 321 HOH HOH . F 4 HOH A 22 322 322 HOH HOH . F 4 HOH A 23 323 323 HOH HOH . F 4 HOH A 24 324 324 HOH HOH . F 4 HOH A 25 325 325 HOH HOH . F 4 HOH A 26 326 326 HOH HOH . F 4 HOH A 27 327 327 HOH HOH . F 4 HOH A 28 328 328 HOH HOH . F 4 HOH A 29 329 329 HOH HOH . F 4 HOH A 30 330 330 HOH HOH . F 4 HOH A 31 331 331 HOH HOH . F 4 HOH A 32 332 332 HOH HOH . F 4 HOH A 33 333 333 HOH HOH . F 4 HOH A 34 334 334 HOH HOH . F 4 HOH A 35 335 335 HOH HOH . F 4 HOH A 36 336 336 HOH HOH . F 4 HOH A 37 337 337 HOH HOH . F 4 HOH A 38 338 338 HOH HOH . F 4 HOH A 39 339 339 HOH HOH . F 4 HOH A 40 340 340 HOH HOH . F 4 HOH A 41 341 341 HOH HOH . F 4 HOH A 42 342 342 HOH HOH . F 4 HOH A 43 343 343 HOH HOH . F 4 HOH A 44 344 344 HOH HOH . F 4 HOH A 45 345 345 HOH HOH . F 4 HOH A 46 346 346 HOH HOH . F 4 HOH A 47 347 347 HOH HOH . F 4 HOH A 48 348 348 HOH HOH . F 4 HOH A 49 349 349 HOH HOH . F 4 HOH A 50 350 350 HOH HOH . F 4 HOH A 51 351 351 HOH HOH . F 4 HOH A 52 352 352 HOH HOH . F 4 HOH A 53 353 353 HOH HOH . F 4 HOH A 54 354 354 HOH HOH . F 4 HOH A 55 355 355 HOH HOH . F 4 HOH A 56 356 419 HOH HOH . F 4 HOH A 57 357 443 HOH HOH . G 4 HOH B 1 401 401 HOH HOH . G 4 HOH B 2 402 402 HOH HOH . G 4 HOH B 3 403 403 HOH HOH . G 4 HOH B 4 404 404 HOH HOH . G 4 HOH B 5 405 405 HOH HOH . G 4 HOH B 6 406 406 HOH HOH . G 4 HOH B 7 407 407 HOH HOH . G 4 HOH B 8 408 408 HOH HOH . G 4 HOH B 9 409 409 HOH HOH . G 4 HOH B 10 410 410 HOH HOH . G 4 HOH B 11 411 411 HOH HOH . G 4 HOH B 12 412 412 HOH HOH . G 4 HOH B 13 413 413 HOH HOH . G 4 HOH B 14 414 414 HOH HOH . G 4 HOH B 15 415 415 HOH HOH . G 4 HOH B 16 416 416 HOH HOH . G 4 HOH B 17 417 417 HOH HOH . G 4 HOH B 18 418 418 HOH HOH . G 4 HOH B 19 419 420 HOH HOH . G 4 HOH B 20 420 421 HOH HOH . G 4 HOH B 21 421 422 HOH HOH . G 4 HOH B 22 422 423 HOH HOH . G 4 HOH B 23 423 424 HOH HOH . G 4 HOH B 24 424 425 HOH HOH . G 4 HOH B 25 425 426 HOH HOH . G 4 HOH B 26 426 427 HOH HOH . G 4 HOH B 27 427 428 HOH HOH . G 4 HOH B 28 428 429 HOH HOH . G 4 HOH B 29 429 430 HOH HOH . G 4 HOH B 30 430 431 HOH HOH . G 4 HOH B 31 431 432 HOH HOH . G 4 HOH B 32 432 433 HOH HOH . G 4 HOH B 33 433 434 HOH HOH . G 4 HOH B 34 434 435 HOH HOH . G 4 HOH B 35 435 436 HOH HOH . G 4 HOH B 36 436 437 HOH HOH . G 4 HOH B 37 437 438 HOH HOH . G 4 HOH B 38 438 439 HOH HOH . G 4 HOH B 39 439 440 HOH HOH . G 4 HOH B 40 440 441 HOH HOH . G 4 HOH B 41 441 442 HOH HOH . G 4 HOH B 42 442 444 HOH HOH . G 4 HOH B 43 443 445 HOH HOH . G 4 HOH B 44 444 446 HOH HOH . G 4 HOH B 45 445 447 HOH HOH . G 4 HOH B 46 446 448 HOH HOH . G 4 HOH B 47 447 449 HOH HOH . G 4 HOH B 48 448 450 HOH HOH . G 4 HOH B 49 449 451 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C IMN . . . E 3 20.601 13.964 61.047 1 28.36 ? C IMN 300 B 1 HETATM 2 C C1 IMN . . . E 3 20.586 15.139 60.282 1 29.41 ? C1 IMN 300 B 1 HETATM 3 C C2 IMN . . . E 3 20.487 15.043 58.897 1 29.83 ? C2 IMN 300 B 1 HETATM 4 C C3 IMN . . . E 3 20.409 13.789 58.305 1 35.33 ? C3 IMN 300 B 1 HETATM 5 C C4 IMN . . . E 3 20.435 12.631 59.07 1 28.92 ? C4 IMN 300 B 1 HETATM 6 C C5 IMN . . . E 3 20.532 12.713 60.447 1 28.51 ? C5 IMN 300 B 1 HETATM 7 C C6 IMN . . . E 3 20.214 12.424 56.357 1 33.46 ? C6 IMN 300 B 1 HETATM 8 C C7 IMN . . . E 3 20.668 16.244 61.197 1 32.18 ? C7 IMN 300 B 1 HETATM 9 C C8 IMN . . . E 3 20.71 15.753 62.457 1 29.38 ? C8 IMN 300 B 1 HETATM 10 C C9 IMN . . . E 3 20.779 13.46 63.528 1 31.9 ? C9 IMN 300 B 1 HETATM 11 C C10 IMN . . . E 3 19.885 12.261 63.598 1 30.4 ? C10 IMN 300 B 1 HETATM 12 C C11 IMN . . . E 3 20.325 11.146 64.3 1 31.03 ? C11 IMN 300 B 1 HETATM 13 C C12 IMN . . . E 3 19.544 10.011 64.389 1 27.77 ? C12 IMN 300 B 1 HETATM 14 C C13 IMN . . . E 3 18.319 9.984 63.759 1 35.21 ? C13 IMN 300 B 1 HETATM 15 C C14 IMN . . . E 3 17.848 11.083 63.072 1 31.28 ? C14 IMN 300 B 1 HETATM 16 C C15 IMN . . . E 3 18.631 12.219 62.995 1 34.76 ? C15 IMN 300 B 1 HETATM 17 C C16 IMN . . . E 3 20.754 16.511 63.739 1 27.71 ? C16 IMN 300 B 1 HETATM 18 C C17 IMN . . . E 3 20.738 17.694 60.797 1 34.64 ? C17 IMN 300 B 1 HETATM 19 C C18 IMN . . . E 3 19.475 18.12 60.098 1 28.98 ? C18 IMN 300 B 1 HETATM 20 N N IMN . . . E 3 20.682 14.351 62.41 1 31.71 ? N IMN 300 B 1 HETATM 21 O O IMN . . . E 3 20.3 13.719 56.941 1 34.02 ? O IMN 300 B 1 HETATM 22 O O1 IMN . . . E 3 21.592 13.668 64.408 1 36.62 ? O1 IMN 300 B 1 HETATM 23 O O2 IMN . . . E 3 19.455 18.75 59.07 1 29.46 ? O2 IMN 300 B 1 HETATM 24 O O3 IMN . . . E 3 18.406 17.731 60.702 1 30.88 ? O3 IMN 300 B 1 HETATM 25 CL CL IMN . . . E 3 17.384 8.514 63.774 1 42.03 ? CL IMN 300 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #