data_4KYR # _model_server_result.job_id mDLCLt5MOnA_8fJoMBLvOw _model_server_result.datetime_utc '2024-11-05 00:34:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kyr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 4KYR # _exptl.entry_id 4KYR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4KYR _cell.length_a 92.776 _cell.length_b 92.776 _cell.length_c 144.942 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KYR _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 GLC GLC C1 O1 . O4 HO4 . sing 2 ? 2 3 2 GLC GLC C1 O1 . O4 HO4 . sing 3 ? 2 4 3 GLC GLC C1 O1 . O4 HO4 . sing 4 ? 2 5 4 GLC GLC C1 O1 . O4 HO4 . sing 5 ? 2 6 5 GLC GLC C1 O1 . O4 HO4 . sing 6 ? 3 2 1 GLC GLC C1 O1 . O4 HO4 . sing 7 ? 3 3 2 GLC GLC C1 O1 . O4 HO4 . sing 8 ? 3 4 3 GLC GLC C1 O1 . O4 HO4 . sing 9 ? 3 5 4 GLC GLC C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B GLC 1 B 1 GLC C 1 GLC 2 n B GLC 2 B 2 GLC C 2 GLC 2 n B GLC 3 B 3 GLC C 3 GLC 2 n B GLC 4 B 4 GLC C 4 GLC 2 n B GLC 5 B 5 GLC C 5 GLC 2 n B GLC 6 B 6 GLC C 6 GLC 2 n C GLC 1 C 1 GLC D 1 GLC 2 n C GLC 2 C 2 GLC D 2 GLC 2 n C GLC 3 C 3 GLC D 3 GLC 2 n C GLC 4 C 4 GLC D 4 GLC 2 n C GLC 5 C 5 GLC D 5 GLC 2 n C GLC 6 C 6 GLC D 6 GLC 3 n D GLC 1 D 1 GLC E 1 GLC 3 n D GLC 2 D 2 GLC E 2 GLC 3 n D GLC 3 D 3 GLC E 3 GLC 3 n D GLC 4 D 4 GLC E 4 GLC 3 n D GLC 5 D 5 GLC E 5 GLC 3 n E GLC 1 E 1 GLC F 1 GLC 3 n E GLC 2 E 2 GLC F 2 GLC 3 n E GLC 3 E 3 GLC F 3 GLC 3 n E GLC 4 E 4 GLC F 4 GLC 3 n E GLC 5 E 5 GLC F 5 GLC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O4 GLC . B GLC 1 1_555 B C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 ? covale ? covale2 B O4 GLC . B GLC 2 1_555 B C1 GLC . B GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale3 B O4 GLC . B GLC 3 1_555 B C1 GLC . B GLC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale4 B O4 GLC . B GLC 4 1_555 B C1 GLC . B GLC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale5 B O4 GLC . B GLC 5 1_555 B C1 GLC . B GLC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale6 C O4 GLC . C GLC 1 1_555 C C1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.405 ? covale ? covale7 C O4 GLC . C GLC 2 1_555 C C1 GLC . C GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale8 C O4 GLC . C GLC 3 1_555 C C1 GLC . C GLC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale9 C O4 GLC . C GLC 4 1_555 C C1 GLC . C GLC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale10 C O4 GLC . C GLC 5 1_555 C C1 GLC . C GLC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale11 D O4 GLC . D GLC 1 1_555 D C1 GLC . D GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? covale ? covale12 D O4 GLC . D GLC 2 1_555 D C1 GLC . D GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? covale ? covale13 D O4 GLC . D GLC 3 1_555 D C1 GLC . D GLC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale14 D O4 GLC . D GLC 4 1_555 D C1 GLC . D GLC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale15 E O4 GLC . E GLC 1 1_555 E C1 GLC . E GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale16 E O4 GLC . E GLC 2 1_555 E C1 GLC . E GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale17 E O4 GLC . E GLC 3 1_555 E C1 GLC . E GLC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale18 E O4 GLC . E GLC 4 1_555 E C1 GLC . E GLC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 284 n n P O2 PO4 sing 285 n n P O3 PO4 sing 286 n n P O4 PO4 sing 287 n n # _atom_sites.entry_id 4KYR _atom_sites.fract_transf_matrix[1][1] 0.010779 _atom_sites.fract_transf_matrix[1][2] 0.006223 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012446 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006899 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 PO4 A 1 301 1 PO4 PO4 . G 5 HOH A 1 401 1 HOH HOH . G 5 HOH A 2 402 2 HOH HOH . G 5 HOH A 3 403 3 HOH HOH . G 5 HOH A 4 404 4 HOH HOH . G 5 HOH A 5 405 5 HOH HOH . G 5 HOH A 6 406 6 HOH HOH . G 5 HOH A 7 407 7 HOH HOH . G 5 HOH A 8 408 8 HOH HOH . G 5 HOH A 9 409 9 HOH HOH . G 5 HOH A 10 410 10 HOH HOH . G 5 HOH A 11 411 11 HOH HOH . G 5 HOH A 12 412 12 HOH HOH . G 5 HOH A 13 413 13 HOH HOH . G 5 HOH A 14 414 14 HOH HOH . G 5 HOH A 15 415 15 HOH HOH . G 5 HOH A 16 416 16 HOH HOH . G 5 HOH A 17 417 17 HOH HOH . G 5 HOH A 18 418 18 HOH HOH . G 5 HOH A 19 419 19 HOH HOH . G 5 HOH A 20 420 20 HOH HOH . G 5 HOH A 21 421 21 HOH HOH . G 5 HOH A 22 422 22 HOH HOH . G 5 HOH A 23 423 23 HOH HOH . G 5 HOH A 24 424 24 HOH HOH . G 5 HOH A 25 425 25 HOH HOH . G 5 HOH A 26 426 27 HOH HOH . G 5 HOH A 27 427 28 HOH HOH . G 5 HOH A 28 428 29 HOH HOH . G 5 HOH A 29 429 30 HOH HOH . G 5 HOH A 30 430 31 HOH HOH . G 5 HOH A 31 431 32 HOH HOH . G 5 HOH A 32 432 33 HOH HOH . G 5 HOH A 33 433 34 HOH HOH . G 5 HOH A 34 434 35 HOH HOH . G 5 HOH A 35 435 36 HOH HOH . G 5 HOH A 36 436 37 HOH HOH . G 5 HOH A 37 437 38 HOH HOH . G 5 HOH A 38 438 39 HOH HOH . G 5 HOH A 39 439 40 HOH HOH . G 5 HOH A 40 440 41 HOH HOH . G 5 HOH A 41 441 42 HOH HOH . G 5 HOH A 42 442 43 HOH HOH . G 5 HOH A 43 443 44 HOH HOH . G 5 HOH A 44 444 45 HOH HOH . G 5 HOH A 45 445 46 HOH HOH . G 5 HOH A 46 446 47 HOH HOH . G 5 HOH A 47 447 48 HOH HOH . G 5 HOH A 48 448 49 HOH HOH . G 5 HOH A 49 449 50 HOH HOH . G 5 HOH A 50 450 51 HOH HOH . G 5 HOH A 51 451 52 HOH HOH . G 5 HOH A 52 452 53 HOH HOH . G 5 HOH A 53 453 54 HOH HOH . G 5 HOH A 54 454 55 HOH HOH . G 5 HOH A 55 455 56 HOH HOH . G 5 HOH A 56 456 57 HOH HOH . G 5 HOH A 57 457 58 HOH HOH . G 5 HOH A 58 458 59 HOH HOH . G 5 HOH A 59 459 60 HOH HOH . G 5 HOH A 60 460 61 HOH HOH . G 5 HOH A 61 461 62 HOH HOH . G 5 HOH A 62 462 63 HOH HOH . G 5 HOH A 63 463 64 HOH HOH . G 5 HOH A 64 464 65 HOH HOH . G 5 HOH A 65 465 66 HOH HOH . G 5 HOH A 66 466 67 HOH HOH . G 5 HOH A 67 467 68 HOH HOH . G 5 HOH A 68 468 69 HOH HOH . G 5 HOH A 69 469 70 HOH HOH . G 5 HOH A 70 470 71 HOH HOH . G 5 HOH A 71 471 72 HOH HOH . G 5 HOH A 72 472 73 HOH HOH . G 5 HOH A 73 473 74 HOH HOH . G 5 HOH A 74 474 75 HOH HOH . G 5 HOH A 75 475 76 HOH HOH . G 5 HOH A 76 476 77 HOH HOH . G 5 HOH A 77 477 78 HOH HOH . G 5 HOH A 78 478 79 HOH HOH . G 5 HOH A 79 479 80 HOH HOH . G 5 HOH A 80 480 81 HOH HOH . G 5 HOH A 81 481 82 HOH HOH . G 5 HOH A 82 482 83 HOH HOH . G 5 HOH A 83 483 84 HOH HOH . G 5 HOH A 84 484 85 HOH HOH . G 5 HOH A 85 485 86 HOH HOH . G 5 HOH A 86 486 87 HOH HOH . G 5 HOH A 87 487 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . F 4 -3.665 41.865 -1.197 1 37.9 ? P PO4 301 A 1 HETATM 2 O O1 PO4 . . . F 4 -3.038 41.585 -2.517 1 37.21 ? O1 PO4 301 A 1 HETATM 3 O O2 PO4 . . . F 4 -4.303 43.203 -1.38 1 37.83 ? O2 PO4 301 A 1 HETATM 4 O O3 PO4 . . . F 4 -4.679 40.847 -0.733 1 36.79 ? O3 PO4 301 A 1 HETATM 5 O O4 PO4 . . . F 4 -2.659 42.043 -0.082 1 38.35 ? O4 PO4 301 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #