data_4KZI # _model_server_result.job_id -KDA4vFrqXDjgzWai4yweA _model_server_result.datetime_utc '2024-11-01 16:31:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kzi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":701}' # _entry.id 4KZI # _exptl.entry_id 4KZI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4KZI _cell.length_a 74.723 _cell.length_b 76.512 _cell.length_c 128.918 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KZI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,G 1 1 B,D,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4KZI _atom_sites.fract_transf_matrix[1][1] 0.013383 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01307 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007757 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL B 1 701 632 GOL GOL . D 2 GOL A 1 701 632 GOL GOL . E 2 GOL A 1 702 633 GOL GOL . F 3 ZJ0 A 1 703 1 ZJ0 ZJ0 . G 4 HOH B 1 801 2 HOH HOH . G 4 HOH B 2 802 3 HOH HOH . G 4 HOH B 3 803 9 HOH HOH . G 4 HOH B 4 804 10 HOH HOH . G 4 HOH B 5 805 11 HOH HOH . G 4 HOH B 6 806 12 HOH HOH . G 4 HOH B 7 807 13 HOH HOH . G 4 HOH B 8 808 14 HOH HOH . G 4 HOH B 9 809 23 HOH HOH . G 4 HOH B 10 810 24 HOH HOH . G 4 HOH B 11 811 27 HOH HOH . G 4 HOH B 12 812 29 HOH HOH . G 4 HOH B 13 813 34 HOH HOH . G 4 HOH B 14 814 38 HOH HOH . G 4 HOH B 15 815 42 HOH HOH . G 4 HOH B 16 816 44 HOH HOH . G 4 HOH B 17 817 45 HOH HOH . G 4 HOH B 18 818 46 HOH HOH . G 4 HOH B 19 819 47 HOH HOH . G 4 HOH B 20 820 52 HOH HOH . G 4 HOH B 21 821 53 HOH HOH . G 4 HOH B 22 822 57 HOH HOH . G 4 HOH B 23 823 59 HOH HOH . G 4 HOH B 24 824 60 HOH HOH . G 4 HOH B 25 825 61 HOH HOH . G 4 HOH B 26 826 62 HOH HOH . G 4 HOH B 27 827 64 HOH HOH . G 4 HOH B 28 828 65 HOH HOH . G 4 HOH B 29 829 67 HOH HOH . G 4 HOH B 30 830 70 HOH HOH . G 4 HOH B 31 831 72 HOH HOH . G 4 HOH B 32 832 80 HOH HOH . G 4 HOH B 33 833 84 HOH HOH . G 4 HOH B 34 834 85 HOH HOH . G 4 HOH B 35 835 90 HOH HOH . G 4 HOH B 36 836 91 HOH HOH . G 4 HOH B 37 837 92 HOH HOH . G 4 HOH B 38 838 93 HOH HOH . H 4 HOH A 1 801 1 HOH HOH . H 4 HOH A 2 802 4 HOH HOH . H 4 HOH A 3 803 5 HOH HOH . H 4 HOH A 4 804 6 HOH HOH . H 4 HOH A 5 805 7 HOH HOH . H 4 HOH A 6 806 8 HOH HOH . H 4 HOH A 7 807 15 HOH HOH . H 4 HOH A 8 808 16 HOH HOH . H 4 HOH A 9 809 17 HOH HOH . H 4 HOH A 10 810 18 HOH HOH . H 4 HOH A 11 811 19 HOH HOH . H 4 HOH A 12 812 20 HOH HOH . H 4 HOH A 13 813 21 HOH HOH . H 4 HOH A 14 814 22 HOH HOH . H 4 HOH A 15 815 25 HOH HOH . H 4 HOH A 16 816 26 HOH HOH . H 4 HOH A 17 817 28 HOH HOH . H 4 HOH A 18 818 30 HOH HOH . H 4 HOH A 19 819 31 HOH HOH . H 4 HOH A 20 820 32 HOH HOH . H 4 HOH A 21 821 33 HOH HOH . H 4 HOH A 22 822 35 HOH HOH . H 4 HOH A 23 823 36 HOH HOH . H 4 HOH A 24 824 37 HOH HOH . H 4 HOH A 25 825 39 HOH HOH . H 4 HOH A 26 826 40 HOH HOH . H 4 HOH A 27 827 41 HOH HOH . H 4 HOH A 28 828 43 HOH HOH . H 4 HOH A 29 829 48 HOH HOH . H 4 HOH A 30 830 49 HOH HOH . H 4 HOH A 31 831 50 HOH HOH . H 4 HOH A 32 832 51 HOH HOH . H 4 HOH A 33 833 54 HOH HOH . H 4 HOH A 34 834 55 HOH HOH . H 4 HOH A 35 835 56 HOH HOH . H 4 HOH A 36 836 58 HOH HOH . H 4 HOH A 37 837 63 HOH HOH . H 4 HOH A 38 838 66 HOH HOH . H 4 HOH A 39 839 69 HOH HOH . H 4 HOH A 40 840 71 HOH HOH . H 4 HOH A 41 841 73 HOH HOH . H 4 HOH A 42 842 74 HOH HOH . H 4 HOH A 43 843 75 HOH HOH . H 4 HOH A 44 844 76 HOH HOH . H 4 HOH A 45 845 77 HOH HOH . H 4 HOH A 46 846 78 HOH HOH . H 4 HOH A 47 847 79 HOH HOH . H 4 HOH A 48 848 81 HOH HOH . H 4 HOH A 49 849 82 HOH HOH . H 4 HOH A 50 850 83 HOH HOH . H 4 HOH A 51 851 86 HOH HOH . H 4 HOH A 52 852 87 HOH HOH . H 4 HOH A 53 853 88 HOH HOH . H 4 HOH A 54 854 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 2 14.772 -18.886 4.187 1 64.52 ? C1 GOL 701 A 1 HETATM 2 O O1 GOL . . . D 2 16.182 -18.857 4.504 1 70.76 ? O1 GOL 701 A 1 HETATM 3 C C2 GOL . . . D 2 14.031 -20.032 4.878 1 65.98 ? C2 GOL 701 A 1 HETATM 4 O O2 GOL . . . D 2 14.344 -21.115 4.03 1 72.67 ? O2 GOL 701 A 1 HETATM 5 C C3 GOL . . . D 2 12.491 -19.804 4.964 1 77.97 ? C3 GOL 701 A 1 HETATM 6 O O3 GOL . . . D 2 11.574 -20.913 5.264 1 75.38 ? O3 GOL 701 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #