data_4KZN # _model_server_result.job_id DBLz5l2z9YFW4fH0wv7GFw _model_server_result.datetime_utc '2024-11-04 20:16:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kzn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":207}' # _entry.id 4KZN # _exptl.entry_id 4KZN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.99 _cell.angle_gamma 90 _cell.entry_id 4KZN _cell.length_a 87.573 _cell.length_b 32.014 _cell.length_c 42.981 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KZN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 2 5 3 MAN BMA C1 O1 . O6 HO6 . sing 5 ? 2 6 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG B 1 NAG 2 n B NAG 2 B 2 NAG B 2 NAG 2 n B BMA 3 B 3 BMA B 4 BMA 2 n B MAN 4 B 4 MAN B 5 MAN 2 n B MAN 5 B 5 MAN B 6 MAN 2 n B FUC 6 B 6 FUC B 3 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 21 A CYS 26 1_555 A SG CYS 63 A CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf2 A SG CYS 46 A CYS 51 1_555 A SG CYS 55 A CYS 60 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? disulf ? disulf3 A SG CYS 52 A CYS 57 1_555 A SG CYS 97 A CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 56 A CYS 61 1_555 A SG CYS 99 A CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? covale ? covale1 A ND2 ASN 70 A ASN 75 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? covale ? covale2 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale3 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale4 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale5 B O3 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale6 B O6 BMA . B BMA 3 1_555 B C1 MAN . B MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 326 n n C1 C2 PGE sing 327 n n C1 H1 PGE sing 328 n n C1 H12 PGE sing 329 n n O1 HO1 PGE sing 330 n n C2 O2 PGE sing 331 n n C2 H2 PGE sing 332 n n C2 H22 PGE sing 333 n n O2 C3 PGE sing 334 n n C3 C4 PGE sing 335 n n C3 H3 PGE sing 336 n n C3 H32 PGE sing 337 n n C4 O3 PGE sing 338 n n C4 H4 PGE sing 339 n n C4 H42 PGE sing 340 n n O4 C6 PGE sing 341 n n O4 HO4 PGE sing 342 n n C6 C5 PGE sing 343 n n C6 H6 PGE sing 344 n n C6 H62 PGE sing 345 n n C5 O3 PGE sing 346 n n C5 H5 PGE sing 347 n n C5 H52 PGE sing 348 n n # _atom_sites.entry_id 4KZN _atom_sites.fract_transf_matrix[1][1] 0.011419 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000596 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.031236 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023298 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PGE A 1 207 1 PGE PGE . D 4 SO4 A 1 208 1 SO4 SO4 . E 5 HOH A 1 301 1 HOH HOH . E 5 HOH A 2 302 2 HOH HOH . E 5 HOH A 3 303 3 HOH HOH . E 5 HOH A 4 304 4 HOH HOH . E 5 HOH A 5 305 5 HOH HOH . E 5 HOH A 6 306 6 HOH HOH . E 5 HOH A 7 307 7 HOH HOH . E 5 HOH A 8 308 8 HOH HOH . E 5 HOH A 9 309 9 HOH HOH . E 5 HOH A 10 310 10 HOH HOH . E 5 HOH A 11 311 11 HOH HOH . E 5 HOH A 12 312 12 HOH HOH . E 5 HOH A 13 313 13 HOH HOH . E 5 HOH A 14 314 14 HOH HOH . E 5 HOH A 15 315 15 HOH HOH . E 5 HOH A 16 316 16 HOH HOH . E 5 HOH A 17 317 17 HOH HOH . E 5 HOH A 18 318 18 HOH HOH . E 5 HOH A 19 319 19 HOH HOH . E 5 HOH A 20 320 20 HOH HOH . E 5 HOH A 21 321 21 HOH HOH . E 5 HOH A 22 322 23 HOH HOH . E 5 HOH A 23 323 24 HOH HOH . E 5 HOH A 24 324 25 HOH HOH . E 5 HOH A 25 325 26 HOH HOH . E 5 HOH A 26 326 27 HOH HOH . E 5 HOH A 27 327 28 HOH HOH . E 5 HOH A 28 328 29 HOH HOH . E 5 HOH A 29 329 30 HOH HOH . E 5 HOH A 30 330 31 HOH HOH . E 5 HOH A 31 331 32 HOH HOH . E 5 HOH A 32 332 33 HOH HOH . E 5 HOH A 33 333 34 HOH HOH . E 5 HOH A 34 334 35 HOH HOH . E 5 HOH A 35 335 36 HOH HOH . E 5 HOH A 36 336 37 HOH HOH . E 5 HOH A 37 337 38 HOH HOH . E 5 HOH A 38 338 39 HOH HOH . E 5 HOH A 39 339 40 HOH HOH . E 5 HOH A 40 340 41 HOH HOH . E 5 HOH A 41 341 42 HOH HOH . E 5 HOH A 42 342 43 HOH HOH . E 5 HOH A 43 343 44 HOH HOH . E 5 HOH A 44 344 45 HOH HOH . E 5 HOH A 45 345 46 HOH HOH . E 5 HOH A 46 346 47 HOH HOH . E 5 HOH A 47 347 48 HOH HOH . E 5 HOH A 48 348 49 HOH HOH . E 5 HOH A 49 349 50 HOH HOH . E 5 HOH A 50 350 51 HOH HOH . E 5 HOH A 51 351 52 HOH HOH . E 5 HOH A 52 352 53 HOH HOH . E 5 HOH A 53 353 54 HOH HOH . E 5 HOH A 54 354 55 HOH HOH . E 5 HOH A 55 355 56 HOH HOH . E 5 HOH A 56 356 57 HOH HOH . E 5 HOH A 57 357 58 HOH HOH . E 5 HOH A 58 358 60 HOH HOH . E 5 HOH A 59 359 61 HOH HOH . E 5 HOH A 60 360 63 HOH HOH . E 5 HOH A 61 361 65 HOH HOH . E 5 HOH A 62 362 66 HOH HOH . E 5 HOH A 63 363 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . C 3 27.636 3.65 2.784 1 41.8 ? C1 PGE 207 A 1 HETATM 2 O O1 PGE . . . C 3 26.503 3.2 2.039 1 47.21 ? O1 PGE 207 A 1 HETATM 3 C C2 PGE . . . C 3 28.078 2.543 3.719 1 35.48 ? C2 PGE 207 A 1 HETATM 4 O O2 PGE . . . C 3 29.421 2.248 3.464 1 37.19 ? O2 PGE 207 A 1 HETATM 5 C C3 PGE . . . C 3 29.812 0.891 3.632 1 41.51 ? C3 PGE 207 A 1 HETATM 6 C C4 PGE . . . C 3 29.294 0.312 4.941 1 41.85 ? C4 PGE 207 A 1 HETATM 7 O O4 PGE . . . C 3 31.818 -2.473 6.159 1 55.71 ? O4 PGE 207 A 1 HETATM 8 C C6 PGE . . . C 3 30.915 -1.865 7.071 1 39.5 ? C6 PGE 207 A 1 HETATM 9 C C5 PGE . . . C 3 29.587 -1.578 6.386 1 39.01 ? C5 PGE 207 A 1 HETATM 10 O O3 PGE . . . C 3 29.808 -0.994 5.111 1 43.27 ? O3 PGE 207 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 10 #