data_4KZQ
#
_model_server_result.job_id            OdaNOwydOvtwTyIV6A5C-w 
_model_server_result.datetime_utc      '2024-11-04 20:32:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4kzq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":1201}' 
#
_entry.id    4KZQ 
#
_exptl.entry_id    4KZQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              240.254 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-(4-HYDROXY-PHENYL)-CHROMAN-4-ONE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4KZQ 
_cell.length_a            92.8 
_cell.length_b            97.46 
_cell.length_c            117.56 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4KZQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,M,N 1 1 
C,D,I,J,K,L,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 159 A CYS 1081 1_555 F ZN ZN . A ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc2 A ND1 HIS 162 A HIS 1084 1_555 F ZN ZN . A ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
metalc ? metalc3 A SG CYS 167 A CYS 1089 1_555 F ZN ZN . A ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? 
metalc ? metalc4 A SG CYS 170 A CYS 1092 1_555 F ZN ZN . A ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? 
metalc ? metalc5 C SG CYS 159 B CYS 1081 1_555 J ZN ZN . B ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc6 C ND1 HIS 162 B HIS 1084 1_555 J ZN ZN . B ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
metalc ? metalc7 C SG CYS 167 B CYS 1089 1_555 J ZN ZN . B ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? 
metalc ? metalc8 C SG CYS 170 B CYS 1092 1_555 J ZN ZN . B ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
#
_chem_comp.formula           'C15 H12 O3' 
_chem_comp.formula_weight    240.254 
_chem_comp.id                DFL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-(4-HYDROXY-PHENYL)-CHROMAN-4-ONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "4'-HYDROXYFLAVANONE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 DFL doub 83 n y 
C1 C6 DFL sing 84 n y 
C1 H1 DFL sing 85 n n 
C2 C3 DFL sing 86 n y 
C2 H2 DFL sing 87 n n 
C3 C4 DFL doub 88 n y 
C3 H3 DFL sing 89 n n 
C4 C5 DFL sing 90 n y 
C4 C7 DFL sing 91 n n 
C5 C6 DFL doub 92 n y 
C5 O1 DFL sing 93 n n 
C6 H6 DFL sing 94 n n 
C7 C8 DFL sing 95 n n 
C7 O2 DFL doub 96 n n 
C8 C9 DFL sing 97 n n 
C8 H81 DFL sing 98 n n 
C8 H82 DFL sing 99 n n 
C9 O1 DFL sing 100 n n 
C9 C10 DFL sing 101 n n 
C9 H9 DFL sing 102 n n 
C10 C11 DFL doub 103 n y 
C10 C15 DFL sing 104 n y 
C11 C12 DFL sing 105 n y 
C11 H11 DFL sing 106 n n 
C12 C13 DFL doub 107 n y 
C12 H12 DFL sing 108 n n 
C13 C14 DFL sing 109 n y 
C13 O4 DFL sing 110 n n 
C14 C15 DFL doub 111 n y 
C14 H14 DFL sing 112 n n 
C15 H15 DFL sing 113 n n 
O4 HO4 DFL sing 114 n n 
#
_atom_sites.entry_id                     4KZQ 
_atom_sites.fract_transf_matrix[1][1]    0.010776 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010261 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008506 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 DFL A 1 1201 1 DFL A66 . 
F 4 ZN A 1 1202 2 ZN ZN . 
G 5 SO4 A 1 1203 1 SO4 SO4 . 
H 5 SO4 A 1 1204 3 SO4 SO4 . 
I 3 DFL B 1 1201 1 DFL A66 . 
J 4 ZN B 1 1202 1 ZN ZN . 
K 5 SO4 B 1 1203 1 SO4 SO4 . 
L 5 SO4 B 1 1204 2 SO4 SO4 . 
M 6 HOH A 1 1301 6 HOH HOH . 
M 6 HOH A 2 1302 7 HOH HOH . 
M 6 HOH A 3 1303 8 HOH HOH . 
M 6 HOH A 4 1304 16 HOH HOH . 
M 6 HOH A 5 1305 21 HOH HOH . 
M 6 HOH A 6 1306 22 HOH HOH . 
M 6 HOH A 7 1307 25 HOH HOH . 
M 6 HOH A 8 1308 26 HOH HOH . 
M 6 HOH A 9 1309 27 HOH HOH . 
M 6 HOH A 10 1310 29 HOH HOH . 
M 6 HOH A 11 1311 30 HOH HOH . 
M 6 HOH A 12 1312 33 HOH HOH . 
M 6 HOH A 13 1313 34 HOH HOH . 
M 6 HOH A 14 1314 36 HOH HOH . 
M 6 HOH A 15 1315 39 HOH HOH . 
M 6 HOH A 16 1316 44 HOH HOH . 
M 6 HOH A 17 1317 45 HOH HOH . 
M 6 HOH A 18 1318 46 HOH HOH . 
M 6 HOH A 19 1319 47 HOH HOH . 
M 6 HOH A 20 1320 48 HOH HOH . 
M 6 HOH A 21 1321 49 HOH HOH . 
M 6 HOH A 22 1322 50 HOH HOH . 
M 6 HOH A 23 1323 53 HOH HOH . 
M 6 HOH A 24 1324 54 HOH HOH . 
M 6 HOH A 25 1325 59 HOH HOH . 
M 6 HOH A 26 1326 60 HOH HOH . 
M 6 HOH A 27 1327 61 HOH HOH . 
M 6 HOH A 28 1328 68 HOH HOH . 
M 6 HOH A 29 1329 69 HOH HOH . 
M 6 HOH A 30 1330 72 HOH HOH . 
M 6 HOH A 31 1331 75 HOH HOH . 
M 6 HOH A 32 1332 76 HOH HOH . 
M 6 HOH A 33 1333 78 HOH HOH . 
M 6 HOH A 34 1334 79 HOH HOH . 
M 6 HOH A 35 1335 83 HOH HOH . 
M 6 HOH A 36 1336 84 HOH HOH . 
M 6 HOH A 37 1337 90 HOH HOH . 
M 6 HOH A 38 1338 91 HOH HOH . 
M 6 HOH A 39 1339 92 HOH HOH . 
M 6 HOH A 40 1340 95 HOH HOH . 
M 6 HOH A 41 1341 100 HOH HOH . 
M 6 HOH A 42 1342 104 HOH HOH . 
M 6 HOH A 43 1343 106 HOH HOH . 
M 6 HOH A 44 1344 107 HOH HOH . 
M 6 HOH A 45 1345 109 HOH HOH . 
M 6 HOH A 46 1346 110 HOH HOH . 
M 6 HOH A 47 1347 113 HOH HOH . 
M 6 HOH A 48 1348 116 HOH HOH . 
M 6 HOH A 49 1349 117 HOH HOH . 
M 6 HOH A 50 1350 122 HOH HOH . 
M 6 HOH A 51 1351 129 HOH HOH . 
M 6 HOH A 52 1352 138 HOH HOH . 
M 6 HOH A 53 1353 141 HOH HOH . 
M 6 HOH A 54 1354 142 HOH HOH . 
M 6 HOH A 55 1355 143 HOH HOH . 
M 6 HOH A 56 1356 145 HOH HOH . 
M 6 HOH A 57 1357 147 HOH HOH . 
M 6 HOH A 58 1358 149 HOH HOH . 
M 6 HOH A 59 1359 120 HOH HOH . 
N 6 HOH C 1 1201 3 HOH HOH . 
N 6 HOH C 2 1202 4 HOH HOH . 
N 6 HOH C 3 1203 18 HOH HOH . 
N 6 HOH C 4 1204 20 HOH HOH . 
N 6 HOH C 5 1205 32 HOH HOH . 
N 6 HOH C 6 1206 93 HOH HOH . 
N 6 HOH C 7 1207 101 HOH HOH . 
N 6 HOH C 8 1208 103 HOH HOH . 
N 6 HOH C 9 1209 108 HOH HOH . 
N 6 HOH C 10 1210 114 HOH HOH . 
N 6 HOH C 11 1211 115 HOH HOH . 
N 6 HOH C 12 1212 118 HOH HOH . 
N 6 HOH C 13 1213 136 HOH HOH . 
O 6 HOH B 1 1301 1 HOH HOH . 
O 6 HOH B 2 1302 2 HOH HOH . 
O 6 HOH B 3 1303 11 HOH HOH . 
O 6 HOH B 4 1304 12 HOH HOH . 
O 6 HOH B 5 1305 14 HOH HOH . 
O 6 HOH B 6 1306 15 HOH HOH . 
O 6 HOH B 7 1307 17 HOH HOH . 
O 6 HOH B 8 1308 19 HOH HOH . 
O 6 HOH B 9 1309 23 HOH HOH . 
O 6 HOH B 10 1310 24 HOH HOH . 
O 6 HOH B 11 1311 28 HOH HOH . 
O 6 HOH B 12 1312 35 HOH HOH . 
O 6 HOH B 13 1313 37 HOH HOH . 
O 6 HOH B 14 1314 38 HOH HOH . 
O 6 HOH B 15 1315 40 HOH HOH . 
O 6 HOH B 16 1316 41 HOH HOH . 
O 6 HOH B 17 1317 42 HOH HOH . 
O 6 HOH B 18 1318 43 HOH HOH . 
O 6 HOH B 19 1319 51 HOH HOH . 
O 6 HOH B 20 1320 52 HOH HOH . 
O 6 HOH B 21 1321 55 HOH HOH . 
O 6 HOH B 22 1322 56 HOH HOH . 
O 6 HOH B 23 1323 57 HOH HOH . 
O 6 HOH B 24 1324 62 HOH HOH . 
O 6 HOH B 25 1325 63 HOH HOH . 
O 6 HOH B 26 1326 65 HOH HOH . 
O 6 HOH B 27 1327 66 HOH HOH . 
O 6 HOH B 28 1328 67 HOH HOH . 
O 6 HOH B 29 1329 70 HOH HOH . 
O 6 HOH B 30 1330 71 HOH HOH . 
O 6 HOH B 31 1331 74 HOH HOH . 
O 6 HOH B 32 1332 81 HOH HOH . 
O 6 HOH B 33 1333 82 HOH HOH . 
O 6 HOH B 34 1334 86 HOH HOH . 
O 6 HOH B 35 1335 87 HOH HOH . 
O 6 HOH B 36 1336 94 HOH HOH . 
O 6 HOH B 37 1337 96 HOH HOH . 
O 6 HOH B 38 1338 97 HOH HOH . 
O 6 HOH B 39 1339 98 HOH HOH . 
O 6 HOH B 40 1340 99 HOH HOH . 
O 6 HOH B 41 1341 105 HOH HOH . 
O 6 HOH B 42 1342 112 HOH HOH . 
O 6 HOH B 43 1343 121 HOH HOH . 
O 6 HOH B 44 1344 123 HOH HOH . 
O 6 HOH B 45 1345 124 HOH HOH . 
O 6 HOH B 46 1346 125 HOH HOH . 
O 6 HOH B 47 1347 126 HOH HOH . 
O 6 HOH B 48 1348 127 HOH HOH . 
O 6 HOH B 49 1349 128 HOH HOH . 
O 6 HOH B 50 1350 130 HOH HOH . 
O 6 HOH B 51 1351 131 HOH HOH . 
O 6 HOH B 52 1352 134 HOH HOH . 
O 6 HOH B 53 1353 137 HOH HOH . 
O 6 HOH B 54 1354 139 HOH HOH . 
O 6 HOH B 55 1355 140 HOH HOH . 
O 6 HOH B 56 1356 144 HOH HOH . 
O 6 HOH B 57 1357 146 HOH HOH . 
O 6 HOH B 58 1358 148 HOH HOH . 
P 6 HOH D 1 1201 5 HOH HOH . 
P 6 HOH D 2 1202 9 HOH HOH . 
P 6 HOH D 3 1203 10 HOH HOH . 
P 6 HOH D 4 1204 13 HOH HOH . 
P 6 HOH D 5 1205 31 HOH HOH . 
P 6 HOH D 6 1206 58 HOH HOH . 
P 6 HOH D 7 1207 64 HOH HOH . 
P 6 HOH D 8 1208 77 HOH HOH . 
P 6 HOH D 9 1209 85 HOH HOH . 
P 6 HOH D 10 1210 88 HOH HOH . 
P 6 HOH D 11 1211 89 HOH HOH . 
P 6 HOH D 12 1212 111 HOH HOH . 
P 6 HOH D 13 1213 132 HOH HOH . 
P 6 HOH D 14 1214 133 HOH HOH . 
P 6 HOH D 15 1215 135 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DFL . . . I 3 12.1 4.433 -13.795 1 20.8 ? C1 DFL 1201 B 1 
HETATM 2 C C2 DFL . . . I 3 11.413 5.211 -12.856 1 21.33 ? C2 DFL 1201 B 1 
HETATM 3 C C3 DFL . . . I 3 10.46 6.163 -13.272 1 20 ? C3 DFL 1201 B 1 
HETATM 4 C C4 DFL . . . I 3 10.201 6.35 -14.626 1 20 ? C4 DFL 1201 B 1 
HETATM 5 C C5 DFL . . . I 3 10.85 5.523 -15.547 1 20.8 ? C5 DFL 1201 B 1 
HETATM 6 C C6 DFL . . . I 3 11.802 4.582 -15.141 1 21.92 ? C6 DFL 1201 B 1 
HETATM 7 C C7 DFL . . . I 3 9.216 7.299 -15.031 1 21.4 ? C7 DFL 1201 B 1 
HETATM 8 C C8 DFL . . . I 3 8.883 7.3 -16.374 1 20.6 ? C8 DFL 1201 B 1 
HETATM 9 C C9 DFL . . . I 3 9.543 6.442 -17.278 1 24.06 ? C9 DFL 1201 B 1 
HETATM 10 O O1 DFL . . . I 3 10.583 5.63 -16.879 1 21.78 ? O1 DFL 1201 B 1 
HETATM 11 C C10 DFL . . . I 3 9.275 6.397 -18.671 1 25.98 ? C10 DFL 1201 B 1 
HETATM 12 C C11 DFL . . . I 3 10.033 5.554 -19.487 1 28.05 ? C11 DFL 1201 B 1 
HETATM 13 C C12 DFL . . . I 3 9.797 5.488 -20.871 1 30.5 ? C12 DFL 1201 B 1 
HETATM 14 C C13 DFL . . . I 3 8.792 6.268 -21.455 1 29.78 ? C13 DFL 1201 B 1 
HETATM 15 C C14 DFL . . . I 3 8.023 7.125 -20.659 1 27.92 ? C14 DFL 1201 B 1 
HETATM 16 C C15 DFL . . . I 3 8.258 7.168 -19.285 1 27.61 ? C15 DFL 1201 B 1 
HETATM 17 O O2 DFL . . . I 3 8.672 8.08 -14.223 1 17.52 ? O2 DFL 1201 B 1 
HETATM 18 O O4 DFL . . . I 3 8.577 6.19 -22.782 1 29.33 ? O4 DFL 1201 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           18 
#