data_4KZT
#
_model_server_result.job_id            FBxBAMS1l2PgHUG_z8vuhA 
_model_server_result.datetime_utc      '2024-12-07 02:48:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4kzt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":501}' 
#
_entry.id    4KZT 
#
_exptl.entry_id    4KZT 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              175.209 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ARGININE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.02 
_cell.angle_gamma         90 
_cell.entry_id            4KZT 
_cell.length_a            165.829 
_cell.length_b            110.823 
_cell.length_c            117.196 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4KZT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
_chem_comp.formula           'C6 H15 N4 O2 1' 
_chem_comp.formula_weight    175.209 
_chem_comp.id                ARG 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              ARGININE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA ARG sing 13 n n 
N H ARG sing 14 n n 
N H2 ARG sing 15 n n 
CA C ARG sing 16 n n 
CA CB ARG sing 17 n n 
CA HA ARG sing 18 n n 
C O ARG doub 19 n n 
C OXT ARG sing 20 n n 
CB CG ARG sing 21 n n 
CB HB2 ARG sing 22 n n 
CB HB3 ARG sing 23 n n 
CG CD ARG sing 24 n n 
CG HG2 ARG sing 25 n n 
CG HG3 ARG sing 26 n n 
CD NE ARG sing 27 n n 
CD HD2 ARG sing 28 n n 
CD HD3 ARG sing 29 n n 
NE CZ ARG sing 30 n n 
NE HE ARG sing 31 n n 
CZ NH1 ARG sing 32 n n 
CZ NH2 ARG doub 33 n n 
NH1 HH11 ARG sing 34 n n 
NH1 HH12 ARG sing 35 n n 
NH2 HH21 ARG sing 36 n n 
NH2 HH22 ARG sing 37 n n 
OXT HXT ARG sing 38 n n 
#
_atom_sites.entry_id                     4KZT 
_atom_sites.fract_transf_matrix[1][1]    0.00603 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000107 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009023 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008534 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ARG A 1 501 450 ARG ARG . 
F 3 PEG A 1 502 455 PEG PEG . 
G 2 ARG B 1 501 450 ARG ARG . 
H 3 PEG B 1 502 455 PEG PEG . 
I 2 ARG X 1 501 450 ARG ARG . 
J 3 PEG X 1 502 455 PEG PEG . 
K 2 ARG Y 1 501 450 ARG ARG . 
L 3 PEG Y 1 502 455 PEG PEG . 
M 4 HOH A 1 601 1 HOH HOH . 
M 4 HOH A 2 602 6 HOH HOH . 
M 4 HOH A 3 603 12 HOH HOH . 
M 4 HOH A 4 604 14 HOH HOH . 
N 4 HOH B 1 601 8 HOH HOH . 
N 4 HOH B 2 602 9 HOH HOH . 
N 4 HOH B 3 603 11 HOH HOH . 
N 4 HOH B 4 604 15 HOH HOH . 
N 4 HOH B 5 605 16 HOH HOH . 
O 4 HOH X 1 601 5 HOH HOH . 
O 4 HOH X 2 602 10 HOH HOH . 
P 4 HOH Y 1 601 2 HOH HOH . 
P 4 HOH Y 2 602 3 HOH HOH . 
P 4 HOH Y 3 603 4 HOH HOH . 
P 4 HOH Y 4 604 7 HOH HOH . 
P 4 HOH Y 5 605 13 HOH HOH . 
P 4 HOH Y 6 606 17 HOH HOH . 
P 4 HOH Y 7 607 18 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N ARG . . . E 2 121.521 133.266 -14.8 1 47.41 ? N ARG 501 A 1 
HETATM 2 C CA ARG . . . E 2 120.81 131.999 -14.699 1 62.09 ? CA ARG 501 A 1 
HETATM 3 C C ARG . . . E 2 119.355 132.187 -15.164 1 78.45 ? C ARG 501 A 1 
HETATM 4 O O ARG . . . E 2 118.865 133.327 -15.211 1 66.65 ? O ARG 501 A 1 
HETATM 5 C CB ARG . . . E 2 120.834 131.495 -13.245 1 64.18 ? CB ARG 501 A 1 
HETATM 6 C CG ARG . . . E 2 119.88 132.255 -12.302 1 60.68 ? CG ARG 501 A 1 
HETATM 7 C CD ARG . . . E 2 119.698 131.482 -11.008 1 63.87 ? CD ARG 501 A 1 
HETATM 8 N NE ARG . . . E 2 118.492 131.859 -10.253 1 56.09 ? NE ARG 501 A 1 
HETATM 9 C CZ ARG . . . E 2 118.313 131.588 -8.955 1 85.56 ? CZ ARG 501 A 1 
HETATM 10 N NH1 ARG . . . E 2 119.26 130.924 -8.286 1 62.1 ? NH1 ARG 501 A 1 
HETATM 11 N NH2 ARG . . . E 2 117.177 131.935 -8.337 1 52.37 ? NH2 ARG 501 A 1 
HETATM 12 O OXT ARG . . . E 2 118.62 131.234 -15.459 1 84 ? OXT ARG 501 A 1 
#
_model_server_stats.io_time_ms              31 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    106 
_model_server_stats.query_time_ms           541 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           12 
#