data_4KZT # _model_server_result.job_id 4UFLolbcXzOD-bDNQGoh1g _model_server_result.datetime_utc '2024-12-02 08:01:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kzt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":501}' # _entry.id 4KZT # _exptl.entry_id 4KZT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.209 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ARGININE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.02 _cell.angle_gamma 90 _cell.entry_id 4KZT _cell.length_a 165.829 _cell.length_b 110.823 _cell.length_c 117.196 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KZT _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # _chem_comp.formula 'C6 H15 N4 O2 1' _chem_comp.formula_weight 175.209 _chem_comp.id ARG _chem_comp.mon_nstd_flag y _chem_comp.name ARGININE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ARG sing 13 n n N H ARG sing 14 n n N H2 ARG sing 15 n n CA C ARG sing 16 n n CA CB ARG sing 17 n n CA HA ARG sing 18 n n C O ARG doub 19 n n C OXT ARG sing 20 n n CB CG ARG sing 21 n n CB HB2 ARG sing 22 n n CB HB3 ARG sing 23 n n CG CD ARG sing 24 n n CG HG2 ARG sing 25 n n CG HG3 ARG sing 26 n n CD NE ARG sing 27 n n CD HD2 ARG sing 28 n n CD HD3 ARG sing 29 n n NE CZ ARG sing 30 n n NE HE ARG sing 31 n n CZ NH1 ARG sing 32 n n CZ NH2 ARG doub 33 n n NH1 HH11 ARG sing 34 n n NH1 HH12 ARG sing 35 n n NH2 HH21 ARG sing 36 n n NH2 HH22 ARG sing 37 n n OXT HXT ARG sing 38 n n # _atom_sites.entry_id 4KZT _atom_sites.fract_transf_matrix[1][1] 0.00603 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000107 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009023 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008534 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ARG A 1 501 450 ARG ARG . F 3 PEG A 1 502 455 PEG PEG . G 2 ARG B 1 501 450 ARG ARG . H 3 PEG B 1 502 455 PEG PEG . I 2 ARG X 1 501 450 ARG ARG . J 3 PEG X 1 502 455 PEG PEG . K 2 ARG Y 1 501 450 ARG ARG . L 3 PEG Y 1 502 455 PEG PEG . M 4 HOH A 1 601 1 HOH HOH . M 4 HOH A 2 602 6 HOH HOH . M 4 HOH A 3 603 12 HOH HOH . M 4 HOH A 4 604 14 HOH HOH . N 4 HOH B 1 601 8 HOH HOH . N 4 HOH B 2 602 9 HOH HOH . N 4 HOH B 3 603 11 HOH HOH . N 4 HOH B 4 604 15 HOH HOH . N 4 HOH B 5 605 16 HOH HOH . O 4 HOH X 1 601 5 HOH HOH . O 4 HOH X 2 602 10 HOH HOH . P 4 HOH Y 1 601 2 HOH HOH . P 4 HOH Y 2 602 3 HOH HOH . P 4 HOH Y 3 603 4 HOH HOH . P 4 HOH Y 4 604 7 HOH HOH . P 4 HOH Y 5 605 13 HOH HOH . P 4 HOH Y 6 606 17 HOH HOH . P 4 HOH Y 7 607 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ARG . . . K 2 132.599 170.395 -57.324 1 55.68 ? N ARG 501 Y 1 HETATM 2 C CA ARG . . . K 2 133.417 170.269 -58.528 1 50.36 ? CA ARG 501 Y 1 HETATM 3 C C ARG . . . K 2 134.899 170.338 -58.174 1 64.4 ? C ARG 501 Y 1 HETATM 4 O O ARG . . . K 2 135.239 170.707 -57.044 1 62.06 ? O ARG 501 Y 1 HETATM 5 C CB ARG . . . K 2 133.057 171.377 -59.521 1 66.14 ? CB ARG 501 Y 1 HETATM 6 C CG ARG . . . K 2 133.574 172.702 -59.052 1 60.48 ? CG ARG 501 Y 1 HETATM 7 C CD ARG . . . K 2 133.495 173.756 -60.09 1 64.6 ? CD ARG 501 Y 1 HETATM 8 N NE ARG . . . K 2 134.355 174.879 -59.725 1 59.62 ? NE ARG 501 Y 1 HETATM 9 C CZ ARG . . . K 2 134.16 176.119 -60.148 1 88.32 ? CZ ARG 501 Y 1 HETATM 10 N NH1 ARG . . . K 2 133.106 176.392 -60.911 1 56.39 ? NH1 ARG 501 Y 1 HETATM 11 N NH2 ARG . . . K 2 134.988 177.08 -59.767 1 74.38 ? NH2 ARG 501 Y 1 HETATM 12 O OXT ARG . . . K 2 135.783 170.035 -58.983 1 79.53 ? OXT ARG 501 Y 1 # _model_server_stats.io_time_ms 95 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 12 #