data_4L0E # _model_server_result.job_id Rd1q-lvV4Eb9RpmwYmn9Zw _model_server_result.datetime_utc '2025-04-16 05:09:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4l0e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4L0E # _exptl.entry_id 4L0E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4L0E _cell.length_a 91.62 _cell.length_b 91.62 _cell.length_c 123.33 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4L0E _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 380 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 357 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.411 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 4L0E _atom_sites.fract_transf_matrix[1][1] 0.010915 _atom_sites.fract_transf_matrix[1][2] 0.006302 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012603 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008108 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 501 500 HEM HEM . C 3 SO4 A 1 502 1 SO4 SO4 . D 3 SO4 A 1 503 2 SO4 SO4 . E 3 SO4 A 1 504 3 SO4 SO4 . F 4 HOH A 1 601 1 HOH HOH . F 4 HOH A 2 602 2 HOH HOH . F 4 HOH A 3 603 3 HOH HOH . F 4 HOH A 4 604 4 HOH HOH . F 4 HOH A 5 605 5 HOH HOH . F 4 HOH A 6 606 8 HOH HOH . F 4 HOH A 7 607 9 HOH HOH . F 4 HOH A 8 608 10 HOH HOH . F 4 HOH A 9 609 11 HOH HOH . F 4 HOH A 10 610 12 HOH HOH . F 4 HOH A 11 611 13 HOH HOH . F 4 HOH A 12 612 14 HOH HOH . F 4 HOH A 13 613 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 41.694 -4.239 -16.104 1 30.92 ? CHA HEM 501 A 1 HETATM 2 C CHB HEM . . . B 2 43.313 -4.172 -11.542 1 30.49 ? CHB HEM 501 A 1 HETATM 3 C CHC HEM . . . B 2 38.888 -5.307 -9.958 1 30.16 ? CHC HEM 501 A 1 HETATM 4 C CHD HEM . . . B 2 37.533 -6.225 -14.518 1 29.69 ? CHD HEM 501 A 1 HETATM 5 C C1A HEM . . . B 2 42.506 -4.055 -15.007 1 30.74 ? C1A HEM 501 A 1 HETATM 6 C C2A HEM . . . B 2 43.857 -3.528 -15.017 1 30.41 ? C2A HEM 501 A 1 HETATM 7 C C3A HEM . . . B 2 44.3 -3.514 -13.755 1 30.15 ? C3A HEM 501 A 1 HETATM 8 C C4A HEM . . . B 2 43.246 -4.026 -12.907 1 30.51 ? C4A HEM 501 A 1 HETATM 9 C CMA HEM . . . B 2 45.683 -3.044 -13.256 1 29.79 ? CMA HEM 501 A 1 HETATM 10 C CAA HEM . . . B 2 44.635 -3.075 -16.273 1 31 ? CAA HEM 501 A 1 HETATM 11 C CBA HEM . . . B 2 45.094 -4.301 -17.063 1 32.18 ? CBA HEM 501 A 1 HETATM 12 C CGA HEM . . . B 2 45.841 -3.893 -18.309 1 32.55 ? CGA HEM 501 A 1 HETATM 13 O O1A HEM . . . B 2 46.181 -2.691 -18.453 1 33.11 ? O1A HEM 501 A 1 HETATM 14 O O2A HEM . . . B 2 46.099 -4.777 -19.166 1 33.02 ? O2A HEM 501 A 1 HETATM 15 C C1B HEM . . . B 2 42.264 -4.466 -10.705 1 30.33 ? C1B HEM 501 A 1 HETATM 16 C C2B HEM . . . B 2 42.314 -4.521 -9.256 1 30.32 ? C2B HEM 501 A 1 HETATM 17 C C3B HEM . . . B 2 41.09 -4.834 -8.815 1 30 ? C3B HEM 501 A 1 HETATM 18 C C4B HEM . . . B 2 40.229 -4.987 -9.974 1 29.97 ? C4B HEM 501 A 1 HETATM 19 C CMB HEM . . . B 2 43.575 -4.266 -8.396 1 29.61 ? CMB HEM 501 A 1 HETATM 20 C CAB HEM . . . B 2 40.656 -5.016 -7.341 1 30.14 ? CAB HEM 501 A 1 HETATM 21 C CBB HEM . . . B 2 40.751 -4.019 -6.455 1 30.23 ? CBB HEM 501 A 1 HETATM 22 C C1C HEM . . . B 2 38.114 -5.623 -11.052 1 30.14 ? C1C HEM 501 A 1 HETATM 23 C C2C HEM . . . B 2 36.693 -5.923 -11.05 1 29.85 ? C2C HEM 501 A 1 HETATM 24 C C3C HEM . . . B 2 36.328 -6.176 -12.31 1 29.9 ? C3C HEM 501 A 1 HETATM 25 C C4C HEM . . . B 2 37.499 -6.046 -13.154 1 30.3 ? C4C HEM 501 A 1 HETATM 26 C CMC HEM . . . B 2 35.774 -5.944 -9.806 1 29.77 ? CMC HEM 501 A 1 HETATM 27 C CAC HEM . . . B 2 34.911 -6.536 -12.803 1 30.48 ? CAC HEM 501 A 1 HETATM 28 C CBC HEM . . . B 2 34.738 -7.446 -13.767 1 30.97 ? CBC HEM 501 A 1 HETATM 29 C C1D HEM . . . B 2 38.481 -5.743 -15.383 1 30.09 ? C1D HEM 501 A 1 HETATM 30 C C2D HEM . . . B 2 38.366 -5.729 -16.825 1 30.32 ? C2D HEM 501 A 1 HETATM 31 C C3D HEM . . . B 2 39.679 -5.109 -17.318 1 31.09 ? C3D HEM 501 A 1 HETATM 32 C C4D HEM . . . B 2 40.443 -4.816 -16.125 1 30.92 ? C4D HEM 501 A 1 HETATM 33 C CMD HEM . . . B 2 37.186 -6.235 -17.685 1 29.37 ? CMD HEM 501 A 1 HETATM 34 C CAD HEM . . . B 2 40.094 -4.841 -18.779 1 32.84 ? CAD HEM 501 A 1 HETATM 35 C CBD HEM . . . B 2 39.917 -3.351 -19.075 1 34.11 ? CBD HEM 501 A 1 HETATM 36 C CGD HEM . . . B 2 40.061 -3.072 -20.55 1 35.09 ? CGD HEM 501 A 1 HETATM 37 O O1D HEM . . . B 2 39.674 -1.953 -20.987 1 35.39 ? O1D HEM 501 A 1 HETATM 38 O O2D HEM . . . B 2 40.559 -3.961 -21.292 1 35.16 ? O2D HEM 501 A 1 HETATM 39 N NA HEM . . . B 2 42.166 -4.344 -13.702 1 30.44 ? NA HEM 501 A 1 HETATM 40 N NB HEM . . . B 2 40.981 -4.759 -11.106 1 29.84 ? NB HEM 501 A 1 HETATM 41 N NC HEM . . . B 2 38.57 -5.706 -12.353 1 30.13 ? NC HEM 501 A 1 HETATM 42 N ND HEM . . . B 2 39.708 -5.205 -15.012 1 30.4 ? ND HEM 501 A 1 HETATM 43 FE FE HEM . . . B 2 40.366 -4.999 -13.031 1 30.89 ? FE HEM 501 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #