data_4L17 # _model_server_result.job_id T26SnvhHHreYILN7zD3SGw _model_server_result.datetime_utc '2024-11-29 22:12:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4l17 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 4L17 # _exptl.entry_id 4L17 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 250.125 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6,7-DINITROQUINOXALINE-2,3-DIONE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4L17 _cell.length_a 48.85 _cell.length_b 96.79 _cell.length_c 252.84 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4L17 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,L,M 1 1 C,I,J,N 2 1,2 D,K,O 3 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 96.79 0 3 'crystal symmetry operation' 2_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 153 A CYS 153 1_555 B SG CYS 153 C CYS 153 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf2 A SG CYS 206 A CYS 206 1_555 A SG CYS 261 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 206 C CYS 206 1_555 B SG CYS 261 C CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 C SG CYS 153 E CYS 153 1_555 D SG CYS 153 G CYS 153 2_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf5 C SG CYS 206 E CYS 206 1_555 C SG CYS 261 E CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 D SG CYS 206 G CYS 206 1_555 D SG CYS 261 G CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? # _chem_comp.formula 'C8 H2 N4 O6' _chem_comp.formula_weight 250.125 _chem_comp.id DNQ _chem_comp.mon_nstd_flag . _chem_comp.name 6,7-DINITROQUINOXALINE-2,3-DIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DNQX # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 DNQ doub 83 n n O2 C2 DNQ doub 84 n n C1 C2 DNQ sing 85 n n C1 N1 DNQ sing 86 n n C2 N2 DNQ sing 87 n n N1 C3 DNQ doub 88 n n N2 C4 DNQ doub 89 n n C3 C4 DNQ sing 90 n y C3 C5 DNQ sing 91 n y C4 C6 DNQ sing 92 n y C5 C7 DNQ doub 93 n y C5 H51 DNQ sing 94 n n C6 C8 DNQ doub 95 n y C6 H61 DNQ sing 96 n n C7 C8 DNQ sing 97 n y C7 N3 DNQ sing 98 n n C8 N4 DNQ sing 99 n n N3 O3 DNQ sing 100 n n N3 O5 DNQ doub 101 n n N4 O4 DNQ sing 102 n n N4 O6 DNQ doub 103 n n # _atom_sites.entry_id 4L17 _atom_sites.fract_transf_matrix[1][1] 0.020471 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010332 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003955 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 DNQ A 1 301 1 DNQ DNQ . F 3 SO4 A 1 302 3 SO4 SO4 . G 2 DNQ C 1 301 1 DNQ DNQ . H 3 SO4 C 1 302 1 SO4 SO4 . I 2 DNQ E 1 301 1 DNQ DNQ . J 3 SO4 E 1 302 2 SO4 SO4 . K 2 DNQ G 1 301 1 DNQ DNQ . L 4 HOH A 1 401 2 HOH HOH . L 4 HOH A 2 402 4 HOH HOH . L 4 HOH A 3 403 9 HOH HOH . L 4 HOH A 4 404 11 HOH HOH . L 4 HOH A 5 405 13 HOH HOH . L 4 HOH A 6 406 16 HOH HOH . L 4 HOH A 7 407 22 HOH HOH . L 4 HOH A 8 408 23 HOH HOH . L 4 HOH A 9 409 26 HOH HOH . L 4 HOH A 10 410 30 HOH HOH . L 4 HOH A 11 411 32 HOH HOH . L 4 HOH A 12 412 33 HOH HOH . L 4 HOH A 13 413 37 HOH HOH . L 4 HOH A 14 414 39 HOH HOH . L 4 HOH A 15 415 41 HOH HOH . L 4 HOH A 16 416 42 HOH HOH . L 4 HOH A 17 417 44 HOH HOH . L 4 HOH A 18 418 46 HOH HOH . L 4 HOH A 19 419 48 HOH HOH . L 4 HOH A 20 420 54 HOH HOH . L 4 HOH A 21 421 56 HOH HOH . L 4 HOH A 22 422 57 HOH HOH . L 4 HOH A 23 423 58 HOH HOH . L 4 HOH A 24 424 59 HOH HOH . L 4 HOH A 25 425 65 HOH HOH . L 4 HOH A 26 426 67 HOH HOH . L 4 HOH A 27 427 69 HOH HOH . L 4 HOH A 28 428 72 HOH HOH . L 4 HOH A 29 429 74 HOH HOH . L 4 HOH A 30 430 75 HOH HOH . L 4 HOH A 31 431 78 HOH HOH . L 4 HOH A 32 432 80 HOH HOH . L 4 HOH A 33 433 82 HOH HOH . L 4 HOH A 34 434 84 HOH HOH . L 4 HOH A 35 435 86 HOH HOH . L 4 HOH A 36 436 87 HOH HOH . L 4 HOH A 37 437 89 HOH HOH . L 4 HOH A 38 438 90 HOH HOH . L 4 HOH A 39 439 91 HOH HOH . L 4 HOH A 40 440 92 HOH HOH . L 4 HOH A 41 441 94 HOH HOH . L 4 HOH A 42 442 95 HOH HOH . L 4 HOH A 43 443 98 HOH HOH . L 4 HOH A 44 444 99 HOH HOH . L 4 HOH A 45 445 100 HOH HOH . L 4 HOH A 46 446 101 HOH HOH . L 4 HOH A 47 447 102 HOH HOH . L 4 HOH A 48 448 106 HOH HOH . L 4 HOH A 49 449 107 HOH HOH . L 4 HOH A 50 450 108 HOH HOH . L 4 HOH A 51 451 110 HOH HOH . L 4 HOH A 52 452 116 HOH HOH . L 4 HOH A 53 453 117 HOH HOH . L 4 HOH A 54 454 118 HOH HOH . L 4 HOH A 55 455 120 HOH HOH . L 4 HOH A 56 456 122 HOH HOH . L 4 HOH A 57 457 123 HOH HOH . L 4 HOH A 58 458 124 HOH HOH . L 4 HOH A 59 459 128 HOH HOH . L 4 HOH A 60 460 134 HOH HOH . L 4 HOH A 61 461 135 HOH HOH . M 4 HOH C 1 401 1 HOH HOH . M 4 HOH C 2 402 3 HOH HOH . M 4 HOH C 3 403 5 HOH HOH . M 4 HOH C 4 404 6 HOH HOH . M 4 HOH C 5 405 7 HOH HOH . M 4 HOH C 6 406 8 HOH HOH . M 4 HOH C 7 407 10 HOH HOH . M 4 HOH C 8 408 12 HOH HOH . M 4 HOH C 9 409 14 HOH HOH . M 4 HOH C 10 410 15 HOH HOH . M 4 HOH C 11 411 18 HOH HOH . M 4 HOH C 12 412 27 HOH HOH . M 4 HOH C 13 413 28 HOH HOH . M 4 HOH C 14 414 29 HOH HOH . M 4 HOH C 15 415 31 HOH HOH . M 4 HOH C 16 416 34 HOH HOH . M 4 HOH C 17 417 36 HOH HOH . M 4 HOH C 18 418 40 HOH HOH . M 4 HOH C 19 419 45 HOH HOH . M 4 HOH C 20 420 47 HOH HOH . M 4 HOH C 21 421 49 HOH HOH . M 4 HOH C 22 422 50 HOH HOH . M 4 HOH C 23 423 51 HOH HOH . M 4 HOH C 24 424 52 HOH HOH . M 4 HOH C 25 425 55 HOH HOH . M 4 HOH C 26 426 63 HOH HOH . M 4 HOH C 27 427 64 HOH HOH . M 4 HOH C 28 428 66 HOH HOH . M 4 HOH C 29 429 76 HOH HOH . M 4 HOH C 30 430 83 HOH HOH . M 4 HOH C 31 431 85 HOH HOH . M 4 HOH C 32 432 88 HOH HOH . M 4 HOH C 33 433 97 HOH HOH . M 4 HOH C 34 434 103 HOH HOH . M 4 HOH C 35 435 104 HOH HOH . M 4 HOH C 36 436 105 HOH HOH . M 4 HOH C 37 437 109 HOH HOH . M 4 HOH C 38 438 111 HOH HOH . M 4 HOH C 39 439 114 HOH HOH . M 4 HOH C 40 440 115 HOH HOH . M 4 HOH C 41 441 119 HOH HOH . M 4 HOH C 42 442 121 HOH HOH . M 4 HOH C 43 443 125 HOH HOH . M 4 HOH C 44 444 126 HOH HOH . M 4 HOH C 45 445 129 HOH HOH . M 4 HOH C 46 446 130 HOH HOH . M 4 HOH C 47 447 131 HOH HOH . M 4 HOH C 48 448 132 HOH HOH . M 4 HOH C 49 449 136 HOH HOH . M 4 HOH C 50 450 137 HOH HOH . N 4 HOH E 1 401 17 HOH HOH . N 4 HOH E 2 402 19 HOH HOH . N 4 HOH E 3 403 20 HOH HOH . N 4 HOH E 4 404 21 HOH HOH . N 4 HOH E 5 405 24 HOH HOH . N 4 HOH E 6 406 25 HOH HOH . N 4 HOH E 7 407 35 HOH HOH . N 4 HOH E 8 408 38 HOH HOH . N 4 HOH E 9 409 43 HOH HOH . N 4 HOH E 10 410 53 HOH HOH . N 4 HOH E 11 411 60 HOH HOH . N 4 HOH E 12 412 61 HOH HOH . N 4 HOH E 13 413 68 HOH HOH . N 4 HOH E 14 414 70 HOH HOH . N 4 HOH E 15 415 71 HOH HOH . N 4 HOH E 16 416 73 HOH HOH . N 4 HOH E 17 417 77 HOH HOH . N 4 HOH E 18 418 79 HOH HOH . N 4 HOH E 19 419 81 HOH HOH . N 4 HOH E 20 420 93 HOH HOH . N 4 HOH E 21 421 96 HOH HOH . N 4 HOH E 22 422 112 HOH HOH . N 4 HOH E 23 423 113 HOH HOH . N 4 HOH E 24 424 127 HOH HOH . O 4 HOH G 1 401 62 HOH HOH . O 4 HOH G 2 402 133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 DNQ . . . E 2 8.474 46.447 48.044 1 64.26 ? O1 DNQ 301 A 1 HETATM 2 O O2 DNQ . . . E 2 6.102 47.186 49.301 1 35.78 ? O2 DNQ 301 A 1 HETATM 3 C C1 DNQ . . . E 2 7.424 45.552 48.128 1 54 ? C1 DNQ 301 A 1 HETATM 4 C C2 DNQ . . . E 2 6.234 45.92 48.76 1 39.9 ? C2 DNQ 301 A 1 HETATM 5 N N1 DNQ . . . E 2 7.559 44.238 47.562 1 48.38 ? N1 DNQ 301 A 1 HETATM 6 N N2 DNQ . . . E 2 5.214 45.039 48.839 1 36.34 ? N2 DNQ 301 A 1 HETATM 7 C C3 DNQ . . . E 2 6.535 43.362 47.644 1 37.7 ? C3 DNQ 301 A 1 HETATM 8 C C4 DNQ . . . E 2 5.352 43.727 48.274 1 34.67 ? C4 DNQ 301 A 1 HETATM 9 C C5 DNQ . . . E 2 6.67 42.05 47.082 1 47.52 ? C5 DNQ 301 A 1 HETATM 10 C C6 DNQ . . . E 2 4.254 42.785 48.358 1 39.9 ? C6 DNQ 301 A 1 HETATM 11 C C7 DNQ . . . E 2 5.575 41.098 47.164 1 56.83 ? C7 DNQ 301 A 1 HETATM 12 C C8 DNQ . . . E 2 4.387 41.461 47.791 1 45.86 ? C8 DNQ 301 A 1 HETATM 13 N N3 DNQ . . . E 2 5.764 39.806 46.561 1 77.97 ? N3 DNQ 301 A 1 HETATM 14 N N4 DNQ . . . E 2 3.275 40.517 47.903 1 50.66 ? N4 DNQ 301 A 1 HETATM 15 O O3 DNQ . . . E 2 6.974 39.349 46.384 1 78.59 ? O3 DNQ 301 A 1 HETATM 16 O O4 DNQ . . . E 2 2.05 40.969 47.953 1 56.18 ? O4 DNQ 301 A 1 HETATM 17 O O5 DNQ . . . E 2 4.75 39.145 46.059 1 93.06 ? O5 DNQ 301 A 1 HETATM 18 O O6 DNQ . . . E 2 3.505 39.24 48.127 1 51.17 ? O6 DNQ 301 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 18 #