data_4L17
#
_model_server_result.job_id            Mkb21swOjunY9_kbJCStjQ 
_model_server_result.datetime_utc      '2024-11-13 12:39:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4l17 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":301}' 
#
_entry.id    4L17 
#
_exptl.entry_id    4L17 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              250.125 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6,7-DINITROQUINOXALINE-2,3-DIONE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4L17 
_cell.length_a            48.85 
_cell.length_b            96.79 
_cell.length_c            252.84 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4L17 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,L,M 1 1 
C,I,J,N 2 1,2 
D,K,O 3 1,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 96.79 0 
3 'crystal symmetry operation' 2_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 153 A CYS 153 1_555 B SG CYS 153 C CYS 153 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf2 A SG CYS 206 A CYS 206 1_555 A SG CYS 261 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 B SG CYS 206 C CYS 206 1_555 B SG CYS 261 C CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 C SG CYS 153 E CYS 153 1_555 D SG CYS 153 G CYS 153 2_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf5 C SG CYS 206 E CYS 206 1_555 C SG CYS 261 E CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf6 D SG CYS 206 G CYS 206 1_555 D SG CYS 261 G CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
#
_chem_comp.formula           'C8 H2 N4 O6' 
_chem_comp.formula_weight    250.125 
_chem_comp.id                DNQ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6,7-DINITROQUINOXALINE-2,3-DIONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     DNQX 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 DNQ doub 83 n n 
O2 C2 DNQ doub 84 n n 
C1 C2 DNQ sing 85 n n 
C1 N1 DNQ sing 86 n n 
C2 N2 DNQ sing 87 n n 
N1 C3 DNQ doub 88 n n 
N2 C4 DNQ doub 89 n n 
C3 C4 DNQ sing 90 n y 
C3 C5 DNQ sing 91 n y 
C4 C6 DNQ sing 92 n y 
C5 C7 DNQ doub 93 n y 
C5 H51 DNQ sing 94 n n 
C6 C8 DNQ doub 95 n y 
C6 H61 DNQ sing 96 n n 
C7 C8 DNQ sing 97 n y 
C7 N3 DNQ sing 98 n n 
C8 N4 DNQ sing 99 n n 
N3 O3 DNQ sing 100 n n 
N3 O5 DNQ doub 101 n n 
N4 O4 DNQ sing 102 n n 
N4 O6 DNQ doub 103 n n 
#
_atom_sites.entry_id                     4L17 
_atom_sites.fract_transf_matrix[1][1]    0.020471 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010332 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003955 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 DNQ A 1 301 1 DNQ DNQ . 
F 3 SO4 A 1 302 3 SO4 SO4 . 
G 2 DNQ C 1 301 1 DNQ DNQ . 
H 3 SO4 C 1 302 1 SO4 SO4 . 
I 2 DNQ E 1 301 1 DNQ DNQ . 
J 3 SO4 E 1 302 2 SO4 SO4 . 
K 2 DNQ G 1 301 1 DNQ DNQ . 
L 4 HOH A 1 401 2 HOH HOH . 
L 4 HOH A 2 402 4 HOH HOH . 
L 4 HOH A 3 403 9 HOH HOH . 
L 4 HOH A 4 404 11 HOH HOH . 
L 4 HOH A 5 405 13 HOH HOH . 
L 4 HOH A 6 406 16 HOH HOH . 
L 4 HOH A 7 407 22 HOH HOH . 
L 4 HOH A 8 408 23 HOH HOH . 
L 4 HOH A 9 409 26 HOH HOH . 
L 4 HOH A 10 410 30 HOH HOH . 
L 4 HOH A 11 411 32 HOH HOH . 
L 4 HOH A 12 412 33 HOH HOH . 
L 4 HOH A 13 413 37 HOH HOH . 
L 4 HOH A 14 414 39 HOH HOH . 
L 4 HOH A 15 415 41 HOH HOH . 
L 4 HOH A 16 416 42 HOH HOH . 
L 4 HOH A 17 417 44 HOH HOH . 
L 4 HOH A 18 418 46 HOH HOH . 
L 4 HOH A 19 419 48 HOH HOH . 
L 4 HOH A 20 420 54 HOH HOH . 
L 4 HOH A 21 421 56 HOH HOH . 
L 4 HOH A 22 422 57 HOH HOH . 
L 4 HOH A 23 423 58 HOH HOH . 
L 4 HOH A 24 424 59 HOH HOH . 
L 4 HOH A 25 425 65 HOH HOH . 
L 4 HOH A 26 426 67 HOH HOH . 
L 4 HOH A 27 427 69 HOH HOH . 
L 4 HOH A 28 428 72 HOH HOH . 
L 4 HOH A 29 429 74 HOH HOH . 
L 4 HOH A 30 430 75 HOH HOH . 
L 4 HOH A 31 431 78 HOH HOH . 
L 4 HOH A 32 432 80 HOH HOH . 
L 4 HOH A 33 433 82 HOH HOH . 
L 4 HOH A 34 434 84 HOH HOH . 
L 4 HOH A 35 435 86 HOH HOH . 
L 4 HOH A 36 436 87 HOH HOH . 
L 4 HOH A 37 437 89 HOH HOH . 
L 4 HOH A 38 438 90 HOH HOH . 
L 4 HOH A 39 439 91 HOH HOH . 
L 4 HOH A 40 440 92 HOH HOH . 
L 4 HOH A 41 441 94 HOH HOH . 
L 4 HOH A 42 442 95 HOH HOH . 
L 4 HOH A 43 443 98 HOH HOH . 
L 4 HOH A 44 444 99 HOH HOH . 
L 4 HOH A 45 445 100 HOH HOH . 
L 4 HOH A 46 446 101 HOH HOH . 
L 4 HOH A 47 447 102 HOH HOH . 
L 4 HOH A 48 448 106 HOH HOH . 
L 4 HOH A 49 449 107 HOH HOH . 
L 4 HOH A 50 450 108 HOH HOH . 
L 4 HOH A 51 451 110 HOH HOH . 
L 4 HOH A 52 452 116 HOH HOH . 
L 4 HOH A 53 453 117 HOH HOH . 
L 4 HOH A 54 454 118 HOH HOH . 
L 4 HOH A 55 455 120 HOH HOH . 
L 4 HOH A 56 456 122 HOH HOH . 
L 4 HOH A 57 457 123 HOH HOH . 
L 4 HOH A 58 458 124 HOH HOH . 
L 4 HOH A 59 459 128 HOH HOH . 
L 4 HOH A 60 460 134 HOH HOH . 
L 4 HOH A 61 461 135 HOH HOH . 
M 4 HOH C 1 401 1 HOH HOH . 
M 4 HOH C 2 402 3 HOH HOH . 
M 4 HOH C 3 403 5 HOH HOH . 
M 4 HOH C 4 404 6 HOH HOH . 
M 4 HOH C 5 405 7 HOH HOH . 
M 4 HOH C 6 406 8 HOH HOH . 
M 4 HOH C 7 407 10 HOH HOH . 
M 4 HOH C 8 408 12 HOH HOH . 
M 4 HOH C 9 409 14 HOH HOH . 
M 4 HOH C 10 410 15 HOH HOH . 
M 4 HOH C 11 411 18 HOH HOH . 
M 4 HOH C 12 412 27 HOH HOH . 
M 4 HOH C 13 413 28 HOH HOH . 
M 4 HOH C 14 414 29 HOH HOH . 
M 4 HOH C 15 415 31 HOH HOH . 
M 4 HOH C 16 416 34 HOH HOH . 
M 4 HOH C 17 417 36 HOH HOH . 
M 4 HOH C 18 418 40 HOH HOH . 
M 4 HOH C 19 419 45 HOH HOH . 
M 4 HOH C 20 420 47 HOH HOH . 
M 4 HOH C 21 421 49 HOH HOH . 
M 4 HOH C 22 422 50 HOH HOH . 
M 4 HOH C 23 423 51 HOH HOH . 
M 4 HOH C 24 424 52 HOH HOH . 
M 4 HOH C 25 425 55 HOH HOH . 
M 4 HOH C 26 426 63 HOH HOH . 
M 4 HOH C 27 427 64 HOH HOH . 
M 4 HOH C 28 428 66 HOH HOH . 
M 4 HOH C 29 429 76 HOH HOH . 
M 4 HOH C 30 430 83 HOH HOH . 
M 4 HOH C 31 431 85 HOH HOH . 
M 4 HOH C 32 432 88 HOH HOH . 
M 4 HOH C 33 433 97 HOH HOH . 
M 4 HOH C 34 434 103 HOH HOH . 
M 4 HOH C 35 435 104 HOH HOH . 
M 4 HOH C 36 436 105 HOH HOH . 
M 4 HOH C 37 437 109 HOH HOH . 
M 4 HOH C 38 438 111 HOH HOH . 
M 4 HOH C 39 439 114 HOH HOH . 
M 4 HOH C 40 440 115 HOH HOH . 
M 4 HOH C 41 441 119 HOH HOH . 
M 4 HOH C 42 442 121 HOH HOH . 
M 4 HOH C 43 443 125 HOH HOH . 
M 4 HOH C 44 444 126 HOH HOH . 
M 4 HOH C 45 445 129 HOH HOH . 
M 4 HOH C 46 446 130 HOH HOH . 
M 4 HOH C 47 447 131 HOH HOH . 
M 4 HOH C 48 448 132 HOH HOH . 
M 4 HOH C 49 449 136 HOH HOH . 
M 4 HOH C 50 450 137 HOH HOH . 
N 4 HOH E 1 401 17 HOH HOH . 
N 4 HOH E 2 402 19 HOH HOH . 
N 4 HOH E 3 403 20 HOH HOH . 
N 4 HOH E 4 404 21 HOH HOH . 
N 4 HOH E 5 405 24 HOH HOH . 
N 4 HOH E 6 406 25 HOH HOH . 
N 4 HOH E 7 407 35 HOH HOH . 
N 4 HOH E 8 408 38 HOH HOH . 
N 4 HOH E 9 409 43 HOH HOH . 
N 4 HOH E 10 410 53 HOH HOH . 
N 4 HOH E 11 411 60 HOH HOH . 
N 4 HOH E 12 412 61 HOH HOH . 
N 4 HOH E 13 413 68 HOH HOH . 
N 4 HOH E 14 414 70 HOH HOH . 
N 4 HOH E 15 415 71 HOH HOH . 
N 4 HOH E 16 416 73 HOH HOH . 
N 4 HOH E 17 417 77 HOH HOH . 
N 4 HOH E 18 418 79 HOH HOH . 
N 4 HOH E 19 419 81 HOH HOH . 
N 4 HOH E 20 420 93 HOH HOH . 
N 4 HOH E 21 421 96 HOH HOH . 
N 4 HOH E 22 422 112 HOH HOH . 
N 4 HOH E 23 423 113 HOH HOH . 
N 4 HOH E 24 424 127 HOH HOH . 
O 4 HOH G 1 401 62 HOH HOH . 
O 4 HOH G 2 402 133 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 DNQ . . . I 2 6.948 54.802 14.891 1 34.59 ? O1 DNQ 301 E 1 
HETATM 2 O O2 DNQ . . . I 2 7.725 52.495 13.547 1 32.77 ? O2 DNQ 301 E 1 
HETATM 3 C C1 DNQ . . . I 2 6.092 53.721 14.817 1 29.17 ? C1 DNQ 301 E 1 
HETATM 4 C C2 DNQ . . . I 2 6.479 52.561 14.142 1 25.94 ? C2 DNQ 301 E 1 
HETATM 5 N N1 DNQ . . . I 2 4.798 53.792 15.437 1 32.19 ? N1 DNQ 301 E 1 
HETATM 6 N N2 DNQ . . . I 2 5.636 51.508 14.073 1 20.26 ? N2 DNQ 301 E 1 
HETATM 7 C C3 DNQ . . . I 2 3.959 52.736 15.364 1 39.07 ? C3 DNQ 301 E 1 
HETATM 8 C C4 DNQ . . . I 2 4.344 51.583 14.694 1 32.51 ? C4 DNQ 301 E 1 
HETATM 9 C C5 DNQ . . . I 2 2.669 52.805 15.983 1 55.14 ? C5 DNQ 301 E 1 
HETATM 10 C C6 DNQ . . . I 2 3.439 50.452 14.618 1 40.18 ? C6 DNQ 301 E 1 
HETATM 11 C C7 DNQ . . . I 2 1.756 51.678 15.914 1 60.88 ? C7 DNQ 301 E 1 
HETATM 12 C C8 DNQ . . . I 2 2.135 50.521 15.24 1 48.11 ? C8 DNQ 301 E 1 
HETATM 13 N N3 DNQ . . . I 2 0.472 51.823 16.546 1 78.66 ? N3 DNQ 301 E 1 
HETATM 14 N N4 DNQ . . . I 2 1.246 49.36 15.163 1 63.16 ? N4 DNQ 301 E 1 
HETATM 15 O O3 DNQ . . . I 2 0.365 52.571 17.61 1 82.9 ? O3 DNQ 301 E 1 
HETATM 16 O O4 DNQ . . . I 2 0.309 49.176 16.051 1 77.34 ? O4 DNQ 301 E 1 
HETATM 17 O O5 DNQ . . . I 2 -0.612 51.345 15.986 1 77.66 ? O5 DNQ 301 E 1 
HETATM 18 O O6 DNQ . . . I 2 1.493 48.415 14.281 1 64.42 ? O6 DNQ 301 E 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           239 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           18 
#