data_4L1P # _model_server_result.job_id mUuBNhaDfx-kFuUmvDitkA _model_server_result.datetime_utc '2024-10-19 22:25:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4l1p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 4L1P # _exptl.entry_id 4L1P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4L1P _cell.length_a 33.636 _cell.length_b 68.025 _cell.length_c 116.972 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4L1P _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,H 1 1 B,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4L1P _atom_sites.fract_transf_matrix[1][1] 0.02973 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0147 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008549 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL B 1 501 2 GOL GOL . D 2 GOL B 1 502 3 GOL GOL . E 2 GOL B 1 503 5 GOL GOL . F 2 GOL B 1 504 6 GOL GOL . G 2 GOL A 1 501 1 GOL GOL . H 3 HOH B 1 601 3 HOH HOH . H 3 HOH B 2 602 5 HOH HOH . H 3 HOH B 3 603 6 HOH HOH . H 3 HOH B 4 604 8 HOH HOH . H 3 HOH B 5 605 10 HOH HOH . H 3 HOH B 6 606 13 HOH HOH . H 3 HOH B 7 607 14 HOH HOH . H 3 HOH B 8 608 15 HOH HOH . H 3 HOH B 9 609 16 HOH HOH . H 3 HOH B 10 610 18 HOH HOH . H 3 HOH B 11 611 19 HOH HOH . H 3 HOH B 12 612 22 HOH HOH . H 3 HOH B 13 613 23 HOH HOH . H 3 HOH B 14 614 25 HOH HOH . H 3 HOH B 15 615 27 HOH HOH . H 3 HOH B 16 616 28 HOH HOH . H 3 HOH B 17 617 29 HOH HOH . H 3 HOH B 18 618 35 HOH HOH . H 3 HOH B 19 619 36 HOH HOH . H 3 HOH B 20 620 38 HOH HOH . H 3 HOH B 21 621 39 HOH HOH . H 3 HOH B 22 622 41 HOH HOH . H 3 HOH B 23 623 44 HOH HOH . H 3 HOH B 24 624 46 HOH HOH . H 3 HOH B 25 625 47 HOH HOH . H 3 HOH B 26 626 50 HOH HOH . H 3 HOH B 27 627 52 HOH HOH . H 3 HOH B 28 628 53 HOH HOH . H 3 HOH B 29 629 54 HOH HOH . H 3 HOH B 30 630 55 HOH HOH . H 3 HOH B 31 631 59 HOH HOH . H 3 HOH B 32 632 60 HOH HOH . H 3 HOH B 33 633 62 HOH HOH . H 3 HOH B 34 634 63 HOH HOH . H 3 HOH B 35 635 69 HOH HOH . H 3 HOH B 36 636 70 HOH HOH . H 3 HOH B 37 637 71 HOH HOH . H 3 HOH B 38 638 72 HOH HOH . H 3 HOH B 39 639 74 HOH HOH . H 3 HOH B 40 640 75 HOH HOH . H 3 HOH B 41 641 76 HOH HOH . I 3 HOH A 1 601 1 HOH HOH . I 3 HOH A 2 602 2 HOH HOH . I 3 HOH A 3 603 4 HOH HOH . I 3 HOH A 4 604 7 HOH HOH . I 3 HOH A 5 605 9 HOH HOH . I 3 HOH A 6 606 11 HOH HOH . I 3 HOH A 7 607 12 HOH HOH . I 3 HOH A 8 608 17 HOH HOH . I 3 HOH A 9 609 20 HOH HOH . I 3 HOH A 10 610 21 HOH HOH . I 3 HOH A 11 611 24 HOH HOH . I 3 HOH A 12 612 26 HOH HOH . I 3 HOH A 13 613 31 HOH HOH . I 3 HOH A 14 614 32 HOH HOH . I 3 HOH A 15 615 33 HOH HOH . I 3 HOH A 16 616 34 HOH HOH . I 3 HOH A 17 617 37 HOH HOH . I 3 HOH A 18 618 40 HOH HOH . I 3 HOH A 19 619 42 HOH HOH . I 3 HOH A 20 620 45 HOH HOH . I 3 HOH A 21 621 48 HOH HOH . I 3 HOH A 22 622 49 HOH HOH . I 3 HOH A 23 623 51 HOH HOH . I 3 HOH A 24 624 56 HOH HOH . I 3 HOH A 25 625 57 HOH HOH . I 3 HOH A 26 626 66 HOH HOH . I 3 HOH A 27 627 73 HOH HOH . I 3 HOH A 28 628 77 HOH HOH . I 3 HOH A 29 629 78 HOH HOH . I 3 HOH A 30 630 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 2 -29.232 -2.112 20.029 1 72.94 ? C1 GOL 502 B 1 HETATM 2 O O1 GOL . . . D 2 -28.049 -2.534 19.388 1 68.13 ? O1 GOL 502 B 1 HETATM 3 C C2 GOL . . . D 2 -28.937 -0.952 20.977 1 67.03 ? C2 GOL 502 B 1 HETATM 4 O O2 GOL . . . D 2 -27.556 -0.67 20.994 1 55.84 ? O2 GOL 502 B 1 HETATM 5 C C3 GOL . . . D 2 -29.705 0.281 20.514 1 71.04 ? C3 GOL 502 B 1 HETATM 6 O O3 GOL . . . D 2 -31.088 0.005 20.474 1 80.57 ? O3 GOL 502 B 1 HETATM 7 H H31 GOL . . . D 2 -29.361 0.576 19.523 1 85.25 ? H31 GOL 502 B 1 HETATM 8 H H32 GOL . . . D 2 -29.516 1.108 21.199 1 85.25 ? H32 GOL 502 B 1 HETATM 9 H HO3 GOL . . . D 2 -31.575 0.818 20.226 1 96.68 ? HO3 GOL 502 B 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #