data_4L1R # _model_server_result.job_id 7kkgtCJ6lCQB2lFAxuP7Kg _model_server_result.datetime_utc '2024-11-05 00:58:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4l1r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1674}' # _entry.id 4L1R # _exptl.entry_id 4L1R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4L1R _cell.length_a 117.432 _cell.length_b 117.432 _cell.length_c 160.42 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4L1R _symmetry.cell_setting ? _symmetry.Int_Tables_number 143 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,L 1 1,2,3 B,H,I,J,K,M 2 1,4,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 58.716 -101.699095 0 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 117.432 0 0 4 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 117.432 0 0 5 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 58.716 101.699095 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 1398 NAG 2 n C NAG 2 C 2 NAG A 1399 NAG 2 n D NAG 1 D 1 NAG A 1430 NAG 2 n D NAG 2 D 2 NAG A 1431 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 89 A CYS 116 1_555 A SG CYS 546 A CYS 573 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 106 A CYS 133 1_555 A SG CYS 502 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 A SG CYS 180 A CYS 207 1_555 A SG CYS 244 A CYS 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf4 A SG CYS 337 A CYS 364 1_555 A SG CYS 385 A CYS 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf5 A SG CYS 569 A CYS 596 1_555 A SG CYS 606 A CYS 633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf6 B SG CYS 89 B CYS 116 1_555 B SG CYS 546 B CYS 573 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf7 B SG CYS 106 B CYS 133 1_555 B SG CYS 502 B CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf8 B SG CYS 180 B CYS 207 1_555 B SG CYS 244 B CYS 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf9 B SG CYS 337 B CYS 364 1_555 B SG CYS 385 B CYS 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf10 B SG CYS 569 B CYS 596 1_555 B SG CYS 606 B CYS 633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? covale ? covale1 A ND2 ASN 114 A ASN 141 1_555 E C1 NAG . A NAG 1141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale2 A ND2 ASN 371 A ASN 398 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 A ND2 ASN 403 A ASN 430 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale4 A ND2 ASN 647 A ASN 674 1_555 F C1 NAG . A NAG 1674 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale5 B ND2 ASN 114 B ASN 141 1_555 H C1 NAG . B NAG 1141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale6 B ND2 ASN 371 B ASN 398 1_555 I C1 NAG . B NAG 1398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale7 B ND2 ASN 403 B ASN 430 1_555 J C1 NAG . B NAG 1430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale8 B ND2 ASN 647 B ASN 674 1_555 K C1 NAG . B NAG 1674 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale9 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale10 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4L1R _atom_sites.fract_transf_matrix[1][1] 0.008516 _atom_sites.fract_transf_matrix[1][2] 0.004916 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009833 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006234 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG A 1 1141 1141 NAG NAG . F 3 NAG A 1 1674 1674 NAG NAG . G 4 CL A 1 801 801 CL CL . H 3 NAG B 1 1141 1141 NAG NAG . I 3 NAG B 1 1398 1398 NAG NAG . J 3 NAG B 1 1430 1430 NAG NAG . K 3 NAG B 1 1674 1674 NAG NAG . L 5 HOH A 1 901 901 HOH HOH . L 5 HOH A 2 902 902 HOH HOH . L 5 HOH A 3 905 905 HOH HOH . L 5 HOH A 4 906 906 HOH HOH . L 5 HOH A 5 907 907 HOH HOH . L 5 HOH A 6 908 908 HOH HOH . L 5 HOH A 7 910 910 HOH HOH . L 5 HOH A 8 911 911 HOH HOH . L 5 HOH A 9 912 912 HOH HOH . L 5 HOH A 10 913 913 HOH HOH . M 5 HOH B 1 903 903 HOH HOH . M 5 HOH B 2 904 904 HOH HOH . M 5 HOH B 3 909 909 HOH HOH . M 5 HOH B 4 914 914 HOH HOH . M 5 HOH B 5 915 915 HOH HOH . M 5 HOH B 6 916 916 HOH HOH . M 5 HOH B 7 917 917 HOH HOH . M 5 HOH B 8 918 918 HOH HOH . M 5 HOH B 9 919 919 HOH HOH . M 5 HOH B 10 920 920 HOH HOH . M 5 HOH B 11 921 921 HOH HOH . M 5 HOH B 12 922 922 HOH HOH . M 5 HOH B 13 923 923 HOH HOH . M 5 HOH B 14 924 924 HOH HOH . M 5 HOH B 15 925 925 HOH HOH . M 5 HOH B 16 926 926 HOH HOH . M 5 HOH B 17 927 927 HOH HOH . M 5 HOH B 18 928 928 HOH HOH . M 5 HOH B 19 929 929 HOH HOH . M 5 HOH B 20 930 930 HOH HOH . M 5 HOH B 21 931 931 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 3 53.877 -48.677 73.729 1 149.31 ? C1 NAG 1674 A 1 HETATM 2 C C2 NAG . . . F 3 53.407 -49.907 74.508 1 149.31 ? C2 NAG 1674 A 1 HETATM 3 C C3 NAG . . . F 3 54.059 -51.164 73.939 1 149.31 ? C3 NAG 1674 A 1 HETATM 4 C C4 NAG . . . F 3 53.833 -51.258 72.433 1 149.31 ? C4 NAG 1674 A 1 HETATM 5 C C5 NAG . . . F 3 54.247 -49.961 71.737 1 149.31 ? C5 NAG 1674 A 1 HETATM 6 C C6 NAG . . . F 3 53.895 -49.937 70.266 1 149.31 ? C6 NAG 1674 A 1 HETATM 7 C C7 NAG . . . F 3 53.055 -48.944 76.757 1 149.31 ? C7 NAG 1674 A 1 HETATM 8 C C8 NAG . . . F 3 53.492 -48.974 78.189 1 149.31 ? C8 NAG 1674 A 1 HETATM 9 N N2 NAG . . . F 3 53.695 -49.783 75.931 1 149.31 ? N2 NAG 1674 A 1 HETATM 10 O O3 NAG . . . F 3 53.525 -52.311 74.591 1 149.31 ? O3 NAG 1674 A 1 HETATM 11 O O4 NAG . . . F 3 54.6 -52.333 71.903 1 149.31 ? O4 NAG 1674 A 1 HETATM 12 O O5 NAG . . . F 3 53.574 -48.845 72.337 1 149.31 ? O5 NAG 1674 A 1 HETATM 13 O O6 NAG . . . F 3 53.146 -48.777 69.925 1 149.31 ? O6 NAG 1674 A 1 HETATM 14 O O7 NAG . . . F 3 52.168 -48.191 76.366 1 149.31 ? O7 NAG 1674 A 1 # _model_server_stats.io_time_ms 89 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #