data_4L1U
#
_model_server_result.job_id            jrDZAvjR_vNak4-9abC2Kw 
_model_server_result.datetime_utc      '2024-12-26 22:52:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4l1u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"QA","auth_seq_id":504}' 
#
_entry.id    4L1U 
#
_exptl.entry_id    4L1U 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107 
_cell.angle_gamma         90 
_cell.entry_id            4L1U 
_cell.length_a            112.932 
_cell.length_b            172.514 
_cell.length_c            58.476 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4L1U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
PISA monomeric 1 author_and_software_defined_assembly 5 
PISA monomeric 1 author_and_software_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
B,G,O,P,Q,R,S,T,U,SA,XA 1 1 
C,H,V,W,X,Y,Z,TA,YA 2 1 
E,I,IA,JA,KA,LA,MA,VA,ZA 3 1 
F,J,NA,OA,PA,QA,WA 4 1 
A,K,L,M,N,RA 5 1 
D,AA,BA,CA,DA,EA,FA,GA,HA,UA 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 N N N 
? 4 Z N N 
? 4 HA N N 
? 4 QA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 G C ARG 6 G ARG 783 1_555 G N TPO 7 G TPO 784 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 G C TPO 7 G TPO 784 1_555 G N PRO 8 G PRO 785 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale3 H C ARG 6 H ARG 783 1_555 H N TPO 7 H TPO 784 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale4 H C TPO 7 H TPO 784 1_555 H N PRO 8 H PRO 785 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale5 I C ARG 6 I ARG 783 1_555 I N TPO 7 I TPO 784 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale6 I C TPO 7 I TPO 784 1_555 I N PRO 8 I PRO 785 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? 
covale ? covale7 J C ARG 6 J ARG 783 1_555 J N TPO 7 J TPO 784 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale8 J C TPO 7 J TPO 784 1_555 J N PRO 8 J PRO 785 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4L1U 
_atom_sites.fract_transf_matrix[1][1]    0.008855 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002707 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005797 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017882 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 3 SO4 A 1 501 5 SO4 SO4 . 
L 3 SO4 A 1 502 7 SO4 SO4 . 
M 3 SO4 A 1 503 13 SO4 SO4 . 
N 4 GOL A 1 504 2 GOL GOL . 
O 3 SO4 B 1 501 2 SO4 SO4 . 
P 3 SO4 B 1 502 8 SO4 SO4 . 
Q 3 SO4 B 1 503 9 SO4 SO4 . 
R 3 SO4 B 1 504 17 SO4 SO4 . 
S 3 SO4 B 1 505 19 SO4 SO4 . 
T 3 SO4 B 1 506 23 SO4 SO4 . 
U 3 SO4 B 1 507 28 SO4 SO4 . 
V 3 SO4 C 1 501 12 SO4 SO4 . 
W 3 SO4 C 1 502 15 SO4 SO4 . 
X 3 SO4 C 1 503 20 SO4 SO4 . 
Y 3 SO4 C 1 504 27 SO4 SO4 . 
Z 4 GOL C 1 505 4 GOL GOL . 
AA 3 SO4 D 1 501 1 SO4 SO4 . 
BA 3 SO4 D 1 502 3 SO4 SO4 . 
CA 3 SO4 D 1 503 4 SO4 SO4 . 
DA 3 SO4 D 1 504 6 SO4 SO4 . 
EA 3 SO4 D 1 505 21 SO4 SO4 . 
FA 3 SO4 D 1 506 22 SO4 SO4 . 
GA 3 SO4 D 1 507 24 SO4 SO4 . 
HA 4 GOL D 1 508 1 GOL GOL . 
IA 3 SO4 E 1 501 10 SO4 SO4 . 
JA 3 SO4 E 1 502 14 SO4 SO4 . 
KA 3 SO4 E 1 503 16 SO4 SO4 . 
LA 3 SO4 E 1 504 18 SO4 SO4 . 
MA 3 SO4 E 1 505 29 SO4 SO4 . 
NA 3 SO4 F 1 501 11 SO4 SO4 . 
OA 3 SO4 F 1 502 25 SO4 SO4 . 
PA 3 SO4 F 1 503 26 SO4 SO4 . 
QA 4 GOL F 1 504 3 GOL GOL . 
RA 5 HOH A 1 601 9 HOH HOH . 
RA 5 HOH A 2 602 14 HOH HOH . 
RA 5 HOH A 3 603 16 HOH HOH . 
RA 5 HOH A 4 604 35 HOH HOH . 
RA 5 HOH A 5 605 37 HOH HOH . 
RA 5 HOH A 6 606 60 HOH HOH . 
RA 5 HOH A 7 607 72 HOH HOH . 
RA 5 HOH A 8 608 73 HOH HOH . 
RA 5 HOH A 9 609 74 HOH HOH . 
RA 5 HOH A 10 610 75 HOH HOH . 
RA 5 HOH A 11 611 95 HOH HOH . 
RA 5 HOH A 12 612 96 HOH HOH . 
RA 5 HOH A 13 613 98 HOH HOH . 
SA 5 HOH B 1 601 2 HOH HOH . 
SA 5 HOH B 2 602 7 HOH HOH . 
SA 5 HOH B 3 603 8 HOH HOH . 
SA 5 HOH B 4 604 10 HOH HOH . 
SA 5 HOH B 5 605 17 HOH HOH . 
SA 5 HOH B 6 606 20 HOH HOH . 
SA 5 HOH B 7 607 28 HOH HOH . 
SA 5 HOH B 8 608 30 HOH HOH . 
SA 5 HOH B 9 609 31 HOH HOH . 
SA 5 HOH B 10 610 33 HOH HOH . 
SA 5 HOH B 11 611 44 HOH HOH . 
SA 5 HOH B 12 612 51 HOH HOH . 
SA 5 HOH B 13 613 52 HOH HOH . 
SA 5 HOH B 14 614 54 HOH HOH . 
SA 5 HOH B 15 615 55 HOH HOH . 
SA 5 HOH B 16 616 56 HOH HOH . 
SA 5 HOH B 17 617 62 HOH HOH . 
SA 5 HOH B 18 618 65 HOH HOH . 
SA 5 HOH B 19 619 68 HOH HOH . 
SA 5 HOH B 20 620 69 HOH HOH . 
SA 5 HOH B 21 621 70 HOH HOH . 
SA 5 HOH B 22 622 71 HOH HOH . 
SA 5 HOH B 23 623 101 HOH HOH . 
SA 5 HOH B 24 624 102 HOH HOH . 
SA 5 HOH B 25 625 103 HOH HOH . 
TA 5 HOH C 1 601 3 HOH HOH . 
TA 5 HOH C 2 602 13 HOH HOH . 
TA 5 HOH C 3 603 22 HOH HOH . 
TA 5 HOH C 4 604 23 HOH HOH . 
TA 5 HOH C 5 605 24 HOH HOH . 
TA 5 HOH C 6 606 32 HOH HOH . 
TA 5 HOH C 7 607 36 HOH HOH . 
TA 5 HOH C 8 608 40 HOH HOH . 
TA 5 HOH C 9 609 45 HOH HOH . 
TA 5 HOH C 10 610 58 HOH HOH . 
TA 5 HOH C 11 611 92 HOH HOH . 
TA 5 HOH C 12 612 93 HOH HOH . 
TA 5 HOH C 13 613 97 HOH HOH . 
TA 5 HOH C 14 614 104 HOH HOH . 
TA 5 HOH C 15 615 105 HOH HOH . 
UA 5 HOH D 1 601 1 HOH HOH . 
UA 5 HOH D 2 602 6 HOH HOH . 
UA 5 HOH D 3 603 15 HOH HOH . 
UA 5 HOH D 4 604 18 HOH HOH . 
UA 5 HOH D 5 605 26 HOH HOH . 
UA 5 HOH D 6 606 27 HOH HOH . 
UA 5 HOH D 7 607 29 HOH HOH . 
UA 5 HOH D 8 608 38 HOH HOH . 
UA 5 HOH D 9 609 39 HOH HOH . 
UA 5 HOH D 10 610 42 HOH HOH . 
UA 5 HOH D 11 611 46 HOH HOH . 
UA 5 HOH D 12 612 47 HOH HOH . 
UA 5 HOH D 13 613 53 HOH HOH . 
UA 5 HOH D 14 614 66 HOH HOH . 
UA 5 HOH D 15 615 67 HOH HOH . 
UA 5 HOH D 16 616 81 HOH HOH . 
UA 5 HOH D 17 617 85 HOH HOH . 
UA 5 HOH D 18 618 88 HOH HOH . 
VA 5 HOH E 1 601 5 HOH HOH . 
VA 5 HOH E 2 602 11 HOH HOH . 
VA 5 HOH E 3 603 12 HOH HOH . 
VA 5 HOH E 4 604 19 HOH HOH . 
VA 5 HOH E 5 605 34 HOH HOH . 
VA 5 HOH E 6 606 48 HOH HOH . 
VA 5 HOH E 7 607 49 HOH HOH . 
VA 5 HOH E 8 608 63 HOH HOH . 
VA 5 HOH E 9 609 84 HOH HOH . 
VA 5 HOH E 10 610 87 HOH HOH . 
VA 5 HOH E 11 611 89 HOH HOH . 
VA 5 HOH E 12 612 91 HOH HOH . 
VA 5 HOH E 13 613 100 HOH HOH . 
WA 5 HOH F 1 601 76 HOH HOH . 
WA 5 HOH F 2 602 4 HOH HOH . 
WA 5 HOH F 3 603 21 HOH HOH . 
WA 5 HOH F 4 604 25 HOH HOH . 
WA 5 HOH F 5 605 41 HOH HOH . 
WA 5 HOH F 6 606 43 HOH HOH . 
WA 5 HOH F 7 607 50 HOH HOH . 
WA 5 HOH F 8 608 64 HOH HOH . 
WA 5 HOH F 9 609 77 HOH HOH . 
WA 5 HOH F 10 610 78 HOH HOH . 
WA 5 HOH F 11 611 79 HOH HOH . 
WA 5 HOH F 12 612 80 HOH HOH . 
WA 5 HOH F 13 613 83 HOH HOH . 
WA 5 HOH F 14 614 86 HOH HOH . 
WA 5 HOH F 15 615 90 HOH HOH . 
WA 5 HOH F 16 616 99 HOH HOH . 
XA 5 HOH G 1 801 59 HOH HOH . 
XA 5 HOH G 2 802 82 HOH HOH . 
XA 5 HOH G 3 803 94 HOH HOH . 
YA 5 HOH H 1 801 61 HOH HOH . 
ZA 5 HOH I 1 801 57 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . QA 4 248.809 -49.962 46.653 1 71.28 ? C1 GOL 504 F 1 
HETATM 2 O O1 GOL . . . QA 4 248.768 -51.373 46.67 1 72.42 ? O1 GOL 504 F 1 
HETATM 3 C C2 GOL . . . QA 4 247.568 -49.409 47.348 1 68.92 ? C2 GOL 504 F 1 
HETATM 4 O O2 GOL . . . QA 4 247.12 -50.351 48.299 1 71.56 ? O2 GOL 504 F 1 
HETATM 5 C C3 GOL . . . QA 4 247.891 -48.084 48.033 1 62.97 ? C3 GOL 504 F 1 
HETATM 6 O O3 GOL . . . QA 4 246.698 -47.428 48.414 1 59.13 ? O3 GOL 504 F 1 
HETATM 7 H H11 GOL . . . QA 4 249.706 -49.613 47.165 1 85.54 ? H11 GOL 504 F 1 
HETATM 8 H H12 GOL . . . QA 4 248.845 -49.607 45.623 1 85.54 ? H12 GOL 504 F 1 
HETATM 9 H HO1 GOL . . . QA 4 249.53 -51.728 46.167 1 86.9 ? HO1 GOL 504 F 1 
HETATM 10 H H2 GOL . . . QA 4 246.793 -49.238 46.601 1 82.7 ? H2 GOL 504 F 1 
HETATM 11 H HO2 GOL . . . QA 4 247.816 -50.489 48.975 1 85.87 ? HO2 GOL 504 F 1 
HETATM 12 H H31 GOL . . . QA 4 248.506 -48.267 48.914 1 75.57 ? H31 GOL 504 F 1 
HETATM 13 H H32 GOL . . . QA 4 248.457 -47.448 47.352 1 75.57 ? H32 GOL 504 F 1 
HETATM 14 H HO3 GOL . . . QA 4 246.589 -46.613 47.88 1 70.95 ? HO3 GOL 504 F 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           341 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#