data_4L27 # _model_server_result.job_id nBKTLtqxGXRqX-oNqYpHNg _model_server_result.datetime_utc '2024-11-05 01:28:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4l27 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":602}' # _entry.id 4L27 # _exptl.entry_id 4L27 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4L27 _cell.length_a 190.454 _cell.length_b 190.454 _cell.length_c 140.847 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4L27 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H 1 1 C,D,I,J,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 118 B LYS 119 1_555 E C4A PLP . B PLP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.266 doub covale ? covale2 B NZ LYS 118 D LYS 119 1_555 G C4A PLP . D PLP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.265 doub covale ? covale3 C NZ LYS 118 A LYS 119 1_555 I C4A PLP . A PLP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.269 doub covale ? covale4 D NZ LYS 118 C LYS 119 1_555 K C4A PLP . C PLP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.269 doub metalc ? metalc1 A SG CYS 51 B CYS 52 1_555 F FE HEM . B HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc2 A NE2 HIS 64 B HIS 65 1_555 F FE HEM . B HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc3 B SG CYS 51 D CYS 52 1_555 H FE HEM . D HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc4 B NE2 HIS 64 D HIS 65 1_555 H FE HEM . D HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc5 C SG CYS 51 A CYS 52 1_555 J FE HEM . A HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc6 C NE2 HIS 64 A HIS 65 1_555 J FE HEM . A HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc7 D SG CYS 51 C CYS 52 1_555 L FE HEM . C HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc8 D NE2 HIS 64 C HIS 65 1_555 L FE HEM . C HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 4L27 _atom_sites.fract_transf_matrix[1][1] 0.005251 _atom_sites.fract_transf_matrix[1][2] 0.003031 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006063 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0071 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PLP B 1 601 1000 PLP PLP . F 3 HEM B 1 602 2000 HEM HEM . G 2 PLP D 1 601 1000 PLP PLP . H 3 HEM D 1 602 2000 HEM HEM . I 2 PLP A 1 601 1000 PLP PLP . J 3 HEM A 1 602 2000 HEM HEM . K 2 PLP C 1 601 1000 PLP PLP . L 3 HEM C 1 602 2000 HEM HEM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . H 3 -47.678 83.732 14.563 1 79.58 ? CHA HEM 602 D 1 HETATM 2 C CHB HEM . . . H 3 -48.844 86.473 18.362 1 80.08 ? CHB HEM 602 D 1 HETATM 3 C CHC HEM . . . H 3 -44.253 88.025 18.599 1 79.75 ? CHC HEM 602 D 1 HETATM 4 C CHD HEM . . . H 3 -43.062 85.292 14.792 1 79.41 ? CHD HEM 602 D 1 HETATM 5 C C1A HEM . . . H 3 -48.403 84.233 15.61 1 79.7 ? C1A HEM 602 D 1 HETATM 6 C C2A HEM . . . H 3 -49.754 83.875 16.034 1 79.79 ? C2A HEM 602 D 1 HETATM 7 C C3A HEM . . . H 3 -50.062 84.646 17.078 1 79.75 ? C3A HEM 602 D 1 HETATM 8 C C4A HEM . . . H 3 -48.933 85.518 17.363 1 79.82 ? C4A HEM 602 D 1 HETATM 9 C CMA HEM . . . H 3 -51.405 84.605 17.837 1 79.68 ? CMA HEM 602 D 1 HETATM 10 C CAA HEM . . . H 3 -50.713 82.82 15.423 1 79.95 ? CAA HEM 602 D 1 HETATM 11 C CBA HEM . . . H 3 -50.097 81.425 15.281 1 80.16 ? CBA HEM 602 D 1 HETATM 12 C CGA HEM . . . H 3 -50.719 80.671 14.125 1 80.21 ? CGA HEM 602 D 1 HETATM 13 O O1A HEM . . . H 3 -50.342 79.489 13.895 1 80.18 ? O1A HEM 602 D 1 HETATM 14 O O2A HEM . . . H 3 -51.603 81.246 13.438 1 80.18 ? O2A HEM 602 D 1 HETATM 15 C C1B HEM . . . H 3 -47.707 87.16 18.73 1 80.13 ? C1B HEM 602 D 1 HETATM 16 C C2B HEM . . . H 3 -47.648 88.153 19.784 1 80.32 ? C2B HEM 602 D 1 HETATM 17 C C3B HEM . . . H 3 -46.383 88.597 19.859 1 80.2 ? C3B HEM 602 D 1 HETATM 18 C C4B HEM . . . H 3 -45.602 87.875 18.86 1 80.01 ? C4B HEM 602 D 1 HETATM 19 C CMB HEM . . . H 3 -48.882 88.573 20.62 1 80.49 ? CMB HEM 602 D 1 HETATM 20 C CAB HEM . . . H 3 -45.782 89.652 20.825 1 80.45 ? CAB HEM 602 D 1 HETATM 21 C CBB HEM . . . H 3 -46.426 90.219 21.853 1 80.63 ? CBB HEM 602 D 1 HETATM 22 C C1C HEM . . . H 3 -43.546 87.4 17.608 1 79.54 ? C1C HEM 602 D 1 HETATM 23 C C2C HEM . . . H 3 -42.135 87.591 17.364 1 79.36 ? C2C HEM 602 D 1 HETATM 24 C C3C HEM . . . H 3 -41.809 86.855 16.294 1 79.34 ? C3C HEM 602 D 1 HETATM 25 C C4C HEM . . . H 3 -42.996 86.151 15.86 1 79.42 ? C4C HEM 602 D 1 HETATM 26 C CMC HEM . . . H 3 -41.259 88.546 18.201 1 79.27 ? CMC HEM 602 D 1 HETATM 27 C CAC HEM . . . H 3 -40.438 86.664 15.609 1 79.3 ? CAC HEM 602 D 1 HETATM 28 C CBC HEM . . . H 3 -39.271 86.983 16.176 1 79.29 ? CBC HEM 602 D 1 HETATM 29 C C1D HEM . . . H 3 -44.199 84.654 14.334 1 79.45 ? C1D HEM 602 D 1 HETATM 30 C C2D HEM . . . H 3 -44.284 83.809 13.16 1 79.44 ? C2D HEM 602 D 1 HETATM 31 C C3D HEM . . . H 3 -45.737 83.317 13.084 1 79.4 ? C3D HEM 602 D 1 HETATM 32 C C4D HEM . . . H 3 -46.369 83.916 14.232 1 79.5 ? C4D HEM 602 D 1 HETATM 33 C CMD HEM . . . H 3 -43.157 83.474 12.165 1 79.45 ? CMD HEM 602 D 1 HETATM 34 C CAD HEM . . . H 3 -46.374 82.376 12.02 1 79.32 ? CAD HEM 602 D 1 HETATM 35 C CBD HEM . . . H 3 -47.694 82.921 11.453 1 79.29 ? CBD HEM 602 D 1 HETATM 36 C CGD HEM . . . H 3 -48.223 82.177 10.269 1 79.3 ? CGD HEM 602 D 1 HETATM 37 O O1D HEM . . . H 3 -48.519 80.967 10.377 1 79.3 ? O1D HEM 602 D 1 HETATM 38 O O2D HEM . . . H 3 -48.371 82.808 9.196 1 79.35 ? O2D HEM 602 D 1 HETATM 39 N NA HEM . . . H 3 -47.937 85.22 16.453 1 79.81 ? NA HEM 602 D 1 HETATM 40 N NB HEM . . . H 3 -46.441 87.005 18.193 1 80.04 ? NB HEM 602 D 1 HETATM 41 N NC HEM . . . H 3 -44.046 86.508 16.681 1 79.6 ? NC HEM 602 D 1 HETATM 42 N ND HEM . . . H 3 -45.461 84.716 14.911 1 79.61 ? ND HEM 602 D 1 HETATM 43 FE FE HEM . . . H 3 -45.962 85.884 16.584 1 79.75 ? FE HEM 602 D 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #