data_4L27
#
_model_server_result.job_id            S8yG17NNtXmeM4SO8zc9fA 
_model_server_result.datetime_utc      '2024-11-26 05:42:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4l27 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":602}' 
#
_entry.id    4L27 
#
_exptl.entry_id    4L27 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4L27 
_cell.length_a            190.454 
_cell.length_b            190.454 
_cell.length_c            140.847 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4L27 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H 1 1 
C,D,I,J,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 118 B LYS 119 1_555 E C4A PLP . B PLP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.266 doub 
covale ? covale2 B NZ LYS 118 D LYS 119 1_555 G C4A PLP . D PLP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.265 doub 
covale ? covale3 C NZ LYS 118 A LYS 119 1_555 I C4A PLP . A PLP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.269 doub 
covale ? covale4 D NZ LYS 118 C LYS 119 1_555 K C4A PLP . C PLP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.269 doub 
metalc ? metalc1 A SG CYS 51 B CYS 52 1_555 F FE HEM . B HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? 
metalc ? metalc2 A NE2 HIS 64 B HIS 65 1_555 F FE HEM . B HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? 
metalc ? metalc3 B SG CYS 51 D CYS 52 1_555 H FE HEM . D HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc4 B NE2 HIS 64 D HIS 65 1_555 H FE HEM . D HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? 
metalc ? metalc5 C SG CYS 51 A CYS 52 1_555 J FE HEM . A HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? 
metalc ? metalc6 C NE2 HIS 64 A HIS 65 1_555 J FE HEM . A HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? 
metalc ? metalc7 D SG CYS 51 C CYS 52 1_555 L FE HEM . C HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc8 D NE2 HIS 64 C HIS 65 1_555 L FE HEM . C HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     4L27 
_atom_sites.fract_transf_matrix[1][1]    0.005251 
_atom_sites.fract_transf_matrix[1][2]    0.003031 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006063 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0071 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PLP B 1 601 1000 PLP PLP . 
F 3 HEM B 1 602 2000 HEM HEM . 
G 2 PLP D 1 601 1000 PLP PLP . 
H 3 HEM D 1 602 2000 HEM HEM . 
I 2 PLP A 1 601 1000 PLP PLP . 
J 3 HEM A 1 602 2000 HEM HEM . 
K 2 PLP C 1 601 1000 PLP PLP . 
L 3 HEM C 1 602 2000 HEM HEM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . L 3 -43.454 107.749 -0.617 1 79.46 ? CHA HEM 602 C 1 
HETATM 2 C CHB HEM . . . L 3 -42.824 107.237 4.148 1 79.96 ? CHB HEM 602 C 1 
HETATM 3 C CHC HEM . . . L 3 -40.918 111.722 4.344 1 79.63 ? CHC HEM 602 C 1 
HETATM 4 C CHD HEM . . . L 3 -41.561 112.211 -0.41 1 79.29 ? CHD HEM 602 C 1 
HETATM 5 C C1A HEM . . . L 3 -43.337 107.138 0.631 1 79.58 ? C1A HEM 602 C 1 
HETATM 6 C C2A HEM . . . L 3 -43.523 105.72 1.022 1 79.67 ? C2A HEM 602 C 1 
HETATM 7 C C3A HEM . . . L 3 -43.341 105.658 2.362 1 79.63 ? C3A HEM 602 C 1 
HETATM 8 C C4A HEM . . . L 3 -43.063 106.98 2.831 1 79.7 ? C4A HEM 602 C 1 
HETATM 9 C CMA HEM . . . L 3 -43.382 104.485 3.381 1 79.56 ? CMA HEM 602 C 1 
HETATM 10 C CAA HEM . . . L 3 -43.863 104.497 0.106 1 79.83 ? CAA HEM 602 C 1 
HETATM 11 C CBA HEM . . . L 3 -45.014 103.692 0.746 1 80.04 ? CBA HEM 602 C 1 
HETATM 12 C CGA HEM . . . L 3 -45.72 102.588 -0.003 1 80.09 ? CGA HEM 602 C 1 
HETATM 13 O O1A HEM . . . L 3 -45.078 101.794 -0.739 1 80.06 ? O1A HEM 602 C 1 
HETATM 14 O O2A HEM . . . L 3 -46.96 102.485 0.211 1 80.06 ? O2A HEM 602 C 1 
HETATM 15 C C1B HEM . . . L 3 -42.318 108.422 4.642 1 80.01 ? C1B HEM 602 C 1 
HETATM 16 C C2B HEM . . . L 3 -42.179 108.776 6.04 1 80.2 ? C2B HEM 602 C 1 
HETATM 17 C C3B HEM . . . L 3 -41.619 109.996 6.115 1 80.08 ? C3B HEM 602 C 1 
HETATM 18 C C4B HEM . . . L 3 -41.429 110.499 4.744 1 79.89 ? C4B HEM 602 C 1 
HETATM 19 C CMB HEM . . . L 3 -42.547 107.837 7.223 1 80.37 ? CMB HEM 602 C 1 
HETATM 20 C CAB HEM . . . L 3 -41.308 110.742 7.444 1 80.33 ? CAB HEM 602 C 1 
HETATM 21 C CBB HEM . . . L 3 -40.208 111.496 7.568 1 80.51 ? CBB HEM 602 C 1 
HETATM 22 C C1C HEM . . . L 3 -40.996 112.211 3.085 1 79.42 ? C1C HEM 602 C 1 
HETATM 23 C C2C HEM . . . L 3 -40.731 113.58 2.812 1 79.24 ? C2C HEM 602 C 1 
HETATM 24 C C3C HEM . . . L 3 -40.911 113.75 1.501 1 79.22 ? C3C HEM 602 C 1 
HETATM 25 C C4C HEM . . . L 3 -41.28 112.47 0.916 1 79.3 ? C4C HEM 602 C 1 
HETATM 26 C CMC HEM . . . L 3 -40.354 114.572 3.937 1 79.15 ? CMC HEM 602 C 1 
HETATM 27 C CAC HEM . . . L 3 -40.743 115.051 0.698 1 79.18 ? CAC HEM 602 C 1 
HETATM 28 C CBC HEM . . . L 3 -40.202 116.173 1.185 1 79.17 ? CBC HEM 602 C 1 
HETATM 29 C C1D HEM . . . L 3 -42.152 111.083 -0.899 1 79.33 ? C1D HEM 602 C 1 
HETATM 30 C C2D HEM . . . L 3 -42.491 110.861 -2.281 1 79.32 ? C2D HEM 602 C 1 
HETATM 31 C C3D HEM . . . L 3 -43.086 109.461 -2.35 1 79.28 ? C3D HEM 602 C 1 
HETATM 32 C C4D HEM . . . L 3 -43.017 108.987 -0.993 1 79.38 ? C4D HEM 602 C 1 
HETATM 33 C CMD HEM . . . L 3 -42.321 111.836 -3.449 1 79.33 ? CMD HEM 602 C 1 
HETATM 34 C CAD HEM . . . L 3 -43.61 108.705 -3.592 1 79.2 ? CAD HEM 602 C 1 
HETATM 35 C CBD HEM . . . L 3 -45.022 108.175 -3.362 1 79.17 ? CBD HEM 602 C 1 
HETATM 36 C CGD HEM . . . L 3 -45.327 107.091 -4.362 1 79.18 ? CGD HEM 602 C 1 
HETATM 37 O O1D HEM . . . L 3 -44.374 106.619 -5.039 1 79.18 ? O1D HEM 602 C 1 
HETATM 38 O O2D HEM . . . L 3 -46.521 106.696 -4.475 1 79.23 ? O2D HEM 602 C 1 
HETATM 39 N NA HEM . . . L 3 -43.087 107.875 1.782 1 79.69 ? NA HEM 602 C 1 
HETATM 40 N NB HEM . . . L 3 -41.849 109.487 3.885 1 79.92 ? NB HEM 602 C 1 
HETATM 41 N NC HEM . . . L 3 -41.316 111.54 1.927 1 79.48 ? NC HEM 602 C 1 
HETATM 42 N ND HEM . . . L 3 -42.526 109.981 -0.152 1 79.49 ? ND HEM 602 C 1 
HETATM 43 FE FE HEM . . . L 3 -42.189 109.734 1.858 1 79.63 ? FE HEM 602 C 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#