data_4L28
#
_model_server_result.job_id            eE4G59Vgf-11qNDIQMyStQ 
_model_server_result.datetime_utc      '2024-11-29 16:32:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4l28 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":602}' 
#
_entry.id    4L28 
#
_exptl.entry_id    4L28 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4L28 
_cell.length_a            109.482 
_cell.length_b            131.074 
_cell.length_c            207.065 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4L28 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,I,J 1 1 
B,D,G,H,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C NE2 HIS 64 C HIS 65 1_555 J FE HEM . C HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc2 A NE2 HIS 64 A HIS 65 1_555 F FE HEM . A HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc3 D NE2 HIS 64 D HIS 65 1_555 L FE HEM . D HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
metalc ? metalc4 B NE2 HIS 64 B HIS 65 1_555 H FE HEM . B HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc5 A SG CYS 51 A CYS 52 1_555 F FE HEM . A HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? 
metalc ? metalc6 D SG CYS 51 D CYS 52 1_555 L FE HEM . D HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? 
metalc ? metalc7 B SG CYS 51 B CYS 52 1_555 H FE HEM . B HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? 
metalc ? metalc8 C SG CYS 51 C CYS 52 1_555 J FE HEM . C HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
covale ? covale1 A NZ LYS 118 A LYS 119 1_555 E C4A PLP . A PLP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 doub 
covale ? covale2 B NZ LYS 118 B LYS 119 1_555 G C4A PLP . B PLP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 doub 
covale ? covale3 C NZ LYS 118 C LYS 119 1_555 I C4A PLP . C PLP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 doub 
covale ? covale4 D NZ LYS 118 D LYS 119 1_555 K C4A PLP . D PLP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 doub 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
_atom_sites.entry_id                     4L28 
_atom_sites.fract_transf_matrix[1][1]    0.009134 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007629 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004829 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PLP A 1 601 1000 PLP PLP . 
F 3 HEM A 1 602 2000 HEM HEM . 
G 2 PLP B 1 601 1000 PLP PLP . 
H 3 HEM B 1 602 2000 HEM HEM . 
I 2 PLP C 1 601 1000 PLP PLP . 
J 3 HEM C 1 602 2000 HEM HEM . 
K 2 PLP D 1 601 1000 PLP PLP . 
L 3 HEM D 1 602 2000 HEM HEM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . H 3 146.413 125.805 243.951 1 102.68 ? CHA HEM 602 B 1 
HETATM 2 C CHB HEM . . . H 3 146.803 121.867 246.687 1 103.03 ? CHB HEM 602 B 1 
HETATM 3 C CHC HEM . . . H 3 142.041 121.276 246.43 1 102.79 ? CHC HEM 602 B 1 
HETATM 4 C CHD HEM . . . H 3 141.61 125.171 243.703 1 102.53 ? CHD HEM 602 B 1 
HETATM 5 C C1A HEM . . . H 3 146.916 124.826 244.756 1 102.75 ? C1A HEM 602 B 1 
HETATM 6 C C2A HEM . . . H 3 148.293 124.735 245.182 1 102.84 ? C2A HEM 602 B 1 
HETATM 7 C C3A HEM . . . H 3 148.401 123.651 245.946 1 102.76 ? C3A HEM 602 B 1 
HETATM 8 C C4A HEM . . . H 3 147.106 123.016 246.007 1 102.83 ? C4A HEM 602 B 1 
HETATM 9 C CMA HEM . . . H 3 149.673 123.135 246.645 1 102.68 ? CMA HEM 602 B 1 
HETATM 10 C CAA HEM . . . H 3 149.393 125.767 244.829 1 103.04 ? CAA HEM 602 B 1 
HETATM 11 C CBA HEM . . . H 3 150.586 125.187 244.081 1 103.31 ? CBA HEM 602 B 1 
HETATM 12 C CGA HEM . . . H 3 151.702 126.198 243.993 1 103.39 ? CGA HEM 602 B 1 
HETATM 13 O O1A HEM . . . H 3 151.439 127.382 243.663 1 103.5 ? O1A HEM 602 B 1 
HETATM 14 O O2A HEM . . . H 3 152.868 125.808 244.243 1 103.37 ? O2A HEM 602 B 1 
HETATM 15 C C1B HEM . . . H 3 145.537 121.384 246.87 1 103.11 ? C1B HEM 602 B 1 
HETATM 16 C C2B HEM . . . H 3 145.195 120.261 247.711 1 103.26 ? C2B HEM 602 B 1 
HETATM 17 C C3B HEM . . . H 3 143.871 120.098 247.643 1 103.2 ? C3B HEM 602 B 1 
HETATM 18 C C4B HEM . . . H 3 143.354 121.12 246.756 1 103.04 ? C4B HEM 602 B 1 
HETATM 19 C CMB HEM . . . H 3 146.234 119.452 248.517 1 103.32 ? CMB HEM 602 B 1 
HETATM 20 C CAB HEM . . . H 3 142.964 119.056 248.337 1 103.47 ? CAB HEM 602 B 1 
HETATM 21 C CBB HEM . . . H 3 143.382 118.128 249.198 1 103.66 ? CBB HEM 602 B 1 
HETATM 22 C C1C HEM . . . H 3 141.525 122.289 245.676 1 102.61 ? C1C HEM 602 B 1 
HETATM 23 C C2C HEM . . . H 3 140.126 122.445 245.365 1 102.45 ? C2C HEM 602 B 1 
HETATM 24 C C3C HEM . . . H 3 140.003 123.533 244.616 1 102.47 ? C3C HEM 602 B 1 
HETATM 25 C C4C HEM . . . H 3 141.328 124.06 244.43 1 102.52 ? C4C HEM 602 B 1 
HETATM 26 C CMC HEM . . . H 3 139.023 121.49 245.869 1 102.34 ? CMC HEM 602 B 1 
HETATM 27 C CAC HEM . . . H 3 138.746 124.174 243.991 1 102.5 ? CAC HEM 602 B 1 
HETATM 28 C CBC HEM . . . H 3 137.56 123.576 243.882 1 102.56 ? CBC HEM 602 B 1 
HETATM 29 C C1D HEM . . . H 3 142.865 125.66 243.459 1 102.59 ? C1D HEM 602 B 1 
HETATM 30 C C2D HEM . . . H 3 143.159 126.723 242.53 1 102.64 ? C2D HEM 602 B 1 
HETATM 31 C C3D HEM . . . H 3 144.664 126.927 242.598 1 102.63 ? C3D HEM 602 B 1 
HETATM 32 C C4D HEM . . . H 3 145.108 125.963 243.575 1 102.64 ? C4D HEM 602 B 1 
HETATM 33 C CMD HEM . . . H 3 142.17 127.487 241.637 1 102.7 ? CMD HEM 602 B 1 
HETATM 34 C CAD HEM . . . H 3 145.506 127.952 241.804 1 102.69 ? CAD HEM 602 B 1 
HETATM 35 C CBD HEM . . . H 3 146.313 127.272 240.71 1 102.84 ? CBD HEM 602 B 1 
HETATM 36 C CGD HEM . . . H 3 147.541 128.081 240.405 1 103.1 ? CGD HEM 602 B 1 
HETATM 37 O O1D HEM . . . H 3 147.844 129.015 241.178 1 103.37 ? O1D HEM 602 B 1 
HETATM 38 O O2D HEM . . . H 3 148.222 127.785 239.395 1 103.44 ? O2D HEM 602 B 1 
HETATM 39 N NA HEM . . . H 3 146.209 123.77 245.284 1 102.85 ? NA HEM 602 B 1 
HETATM 40 N NB HEM . . . H 3 144.393 121.891 246.291 1 103.08 ? NB HEM 602 B 1 
HETATM 41 N NC HEM . . . H 3 142.25 123.295 245.1 1 102.68 ? NC HEM 602 B 1 
HETATM 42 N ND HEM . . . H 3 144.039 125.221 244.058 1 102.74 ? ND HEM 602 B 1 
HETATM 43 FE FE HEM . . . H 3 144.206 123.522 245.196 1 102.81 ? FE HEM 602 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#