data_4L28
#
_model_server_result.job_id            g6zWcQC7uCi7rC3cjagyhQ 
_model_server_result.datetime_utc      '2024-11-01 01:07:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4l28 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":602}' 
#
_entry.id    4L28 
#
_exptl.entry_id    4L28 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4L28 
_cell.length_a            109.482 
_cell.length_b            131.074 
_cell.length_c            207.065 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4L28 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,I,J 1 1 
B,D,G,H,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C NE2 HIS 64 C HIS 65 1_555 J FE HEM . C HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc2 A NE2 HIS 64 A HIS 65 1_555 F FE HEM . A HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc3 D NE2 HIS 64 D HIS 65 1_555 L FE HEM . D HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
metalc ? metalc4 B NE2 HIS 64 B HIS 65 1_555 H FE HEM . B HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc5 A SG CYS 51 A CYS 52 1_555 F FE HEM . A HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? 
metalc ? metalc6 D SG CYS 51 D CYS 52 1_555 L FE HEM . D HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? 
metalc ? metalc7 B SG CYS 51 B CYS 52 1_555 H FE HEM . B HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? 
metalc ? metalc8 C SG CYS 51 C CYS 52 1_555 J FE HEM . C HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
covale ? covale1 A NZ LYS 118 A LYS 119 1_555 E C4A PLP . A PLP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 doub 
covale ? covale2 B NZ LYS 118 B LYS 119 1_555 G C4A PLP . B PLP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 doub 
covale ? covale3 C NZ LYS 118 C LYS 119 1_555 I C4A PLP . C PLP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 doub 
covale ? covale4 D NZ LYS 118 D LYS 119 1_555 K C4A PLP . D PLP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 doub 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
_atom_sites.entry_id                     4L28 
_atom_sites.fract_transf_matrix[1][1]    0.009134 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007629 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004829 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PLP A 1 601 1000 PLP PLP . 
F 3 HEM A 1 602 2000 HEM HEM . 
G 2 PLP B 1 601 1000 PLP PLP . 
H 3 HEM B 1 602 2000 HEM HEM . 
I 2 PLP C 1 601 1000 PLP PLP . 
J 3 HEM C 1 602 2000 HEM HEM . 
K 2 PLP D 1 601 1000 PLP PLP . 
L 3 HEM D 1 602 2000 HEM HEM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . L 3 85.401 143.267 255.123 1 74.77 ? CHA HEM 602 D 1 
HETATM 2 C CHB HEM . . . L 3 84.869 142.293 259.764 1 75.05 ? CHB HEM 602 D 1 
HETATM 3 C CHC HEM . . . L 3 89.619 142.573 260.313 1 74.79 ? CHC HEM 602 D 1 
HETATM 4 C CHD HEM . . . L 3 90.169 143.606 255.694 1 74.61 ? CHD HEM 602 D 1 
HETATM 5 C C1A HEM . . . L 3 84.886 142.914 256.322 1 74.85 ? C1A HEM 602 D 1 
HETATM 6 C C2A HEM . . . L 3 83.509 142.566 256.504 1 74.93 ? C2A HEM 602 D 1 
HETATM 7 C C3A HEM . . . L 3 83.349 142.286 257.784 1 74.9 ? C3A HEM 602 D 1 
HETATM 8 C C4A HEM . . . L 3 84.618 142.477 258.435 1 74.92 ? C4A HEM 602 D 1 
HETATM 9 C CMA HEM . . . L 3 82.048 141.856 258.476 1 74.87 ? CMA HEM 602 D 1 
HETATM 10 C CAA HEM . . . L 3 82.484 142.494 255.351 1 75.04 ? CAA HEM 602 D 1 
HETATM 11 C CBA HEM . . . L 3 81.407 143.56 255.35 1 75.17 ? CBA HEM 602 D 1 
HETATM 12 C CGA HEM . . . L 3 80.299 143.043 254.482 1 75.24 ? CGA HEM 602 D 1 
HETATM 13 O O1A HEM . . . L 3 80.535 142.83 253.277 1 75.26 ? O1A HEM 602 D 1 
HETATM 14 O O2A HEM . . . L 3 79.181 142.837 255.002 1 75.23 ? O2A HEM 602 D 1 
HETATM 15 C C1B HEM . . . L 3 86.118 142.262 260.298 1 75.06 ? C1B HEM 602 D 1 
HETATM 16 C C2B HEM . . . L 3 86.422 141.894 261.66 1 75.17 ? C2B HEM 602 D 1 
HETATM 17 C C3B HEM . . . L 3 87.74 141.965 261.809 1 75.08 ? C3B HEM 602 D 1 
HETATM 18 C C4B HEM . . . L 3 88.288 142.387 260.542 1 74.96 ? C4B HEM 602 D 1 
HETATM 19 C CMB HEM . . . L 3 85.364 141.481 262.699 1 75.25 ? CMB HEM 602 D 1 
HETATM 20 C CAB HEM . . . L 3 88.614 141.687 263.052 1 75.19 ? CAB HEM 602 D 1 
HETATM 21 C CBB HEM . . . L 3 88.149 141.375 264.261 1 75.36 ? CBB HEM 602 D 1 
HETATM 22 C C1C HEM . . . L 3 90.179 142.874 259.109 1 74.67 ? C1C HEM 602 D 1 
HETATM 23 C C2C HEM . . . L 3 91.59 143.067 258.87 1 74.54 ? C2C HEM 602 D 1 
HETATM 24 C C3C HEM . . . L 3 91.745 143.345 257.581 1 74.52 ? C3C HEM 602 D 1 
HETATM 25 C C4C HEM . . . L 3 90.426 143.345 256.997 1 74.6 ? C4C HEM 602 D 1 
HETATM 26 C CMC HEM . . . L 3 92.682 142.942 259.95 1 74.49 ? CMC HEM 602 D 1 
HETATM 27 C CAC HEM . . . L 3 93.032 143.648 256.77 1 74.45 ? CAC HEM 602 D 1 
HETATM 28 C CBC HEM . . . L 3 94.247 143.858 257.284 1 74.42 ? CBC HEM 602 D 1 
HETATM 29 C C1D HEM . . . L 3 88.924 143.725 255.138 1 74.64 ? C1D HEM 602 D 1 
HETATM 30 C C2D HEM . . . L 3 88.65 144.284 253.843 1 74.62 ? C2D HEM 602 D 1 
HETATM 31 C C3D HEM . . . L 3 87.151 144.177 253.668 1 74.63 ? C3D HEM 602 D 1 
HETATM 32 C C4D HEM . . . L 3 86.697 143.559 254.877 1 74.71 ? C4D HEM 602 D 1 
HETATM 33 C CMD HEM . . . L 3 89.651 144.873 252.841 1 74.6 ? CMD HEM 602 D 1 
HETATM 34 C CAD HEM . . . L 3 86.306 144.612 252.457 1 74.59 ? CAD HEM 602 D 1 
HETATM 35 C CBD HEM . . . L 3 85.402 145.778 252.815 1 74.58 ? CBD HEM 602 D 1 
HETATM 36 C CGD HEM . . . L 3 84.248 145.833 251.864 1 74.58 ? CGD HEM 602 D 1 
HETATM 37 O O1D HEM . . . L 3 83.866 144.77 251.331 1 74.58 ? O1D HEM 602 D 1 
HETATM 38 O O2D HEM . . . L 3 83.704 146.939 251.657 1 74.58 ? O2D HEM 602 D 1 
HETATM 39 N NA HEM . . . L 3 85.563 142.851 257.513 1 74.91 ? NA HEM 602 D 1 
HETATM 40 N NB HEM . . . L 3 87.281 142.575 259.626 1 75 ? NB HEM 602 D 1 
HETATM 41 N NC HEM . . . L 3 89.481 143.044 257.945 1 74.72 ? NC HEM 602 D 1 
HETATM 42 N ND HEM . . . L 3 87.748 143.333 255.742 1 74.76 ? ND HEM 602 D 1 
HETATM 43 FE FE HEM . . . L 3 87.541 142.955 257.706 1 74.85 ? FE HEM 602 D 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    40 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#