data_4L2K # _model_server_result.job_id fZ16T44dyEEsHWUdL3S-xw _model_server_result.datetime_utc '2024-11-29 22:16:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4l2k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":1204}' # _entry.id 4L2K # _exptl.entry_id 4L2K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 266.248 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(1,3-benzodioxol-5-yl)-4H-chromen-4-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4L2K _cell.length_a 92.47 _cell.length_b 97.78 _cell.length_c 117.74 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4L2K _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,N,O 1 1 C,D,J,K,L,M,P,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 159 A CYS 1081 1_555 F ZN ZN . A ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc2 A ND1 HIS 162 A HIS 1084 1_555 F ZN ZN . A ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc3 A SG CYS 167 A CYS 1089 1_555 F ZN ZN . A ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc4 A SG CYS 170 A CYS 1092 1_555 F ZN ZN . A ZN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc5 C SG CYS 159 B CYS 1081 1_555 J ZN ZN . B ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc6 C ND1 HIS 162 B HIS 1084 1_555 J ZN ZN . B ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc7 C SG CYS 167 B CYS 1089 1_555 J ZN ZN . B ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc8 C SG CYS 170 B CYS 1092 1_555 J ZN ZN . B ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? # _chem_comp.formula 'C16 H10 O4' _chem_comp.formula_weight 266.248 _chem_comp.id 1V8 _chem_comp.mon_nstd_flag . _chem_comp.name 2-(1,3-benzodioxol-5-yl)-4H-chromen-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAM OAL 1V8 sing 1 n n CAM OAK 1V8 sing 2 n n OAL CAJ 1V8 sing 3 n n OAK CAH 1V8 sing 4 n n CAJ CAP 1V8 doub 5 n y CAJ CAH 1V8 sing 6 n y CAP CAO 1V8 sing 7 n y CAH CAI 1V8 doub 8 n y CAI CAG 1V8 sing 9 n y CAO CAG 1V8 doub 10 n y CAG CAA 1V8 sing 11 n n CAA OAC 1V8 sing 12 n n CAA CAB 1V8 doub 13 n n OAC CAF 1V8 sing 14 n n CAB CAD 1V8 sing 15 n n CAF CAR 1V8 doub 16 n y CAF CAE 1V8 sing 17 n y CAD CAE 1V8 sing 18 n n CAD OAN 1V8 doub 19 n n CAR CAT 1V8 sing 20 n y CAE CAQ 1V8 doub 21 n y CAT CAS 1V8 doub 22 n y CAQ CAS 1V8 sing 23 n y CAI H1 1V8 sing 24 n n CAM H2 1V8 sing 25 n n CAM H3 1V8 sing 26 n n CAP H4 1V8 sing 27 n n CAO H5 1V8 sing 28 n n CAR H6 1V8 sing 29 n n CAT H7 1V8 sing 30 n n CAS H8 1V8 sing 31 n n CAQ H9 1V8 sing 32 n n CAB H10 1V8 sing 33 n n # _atom_sites.entry_id 4L2K _atom_sites.fract_transf_matrix[1][1] 0.010814 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010227 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008493 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 1V8 A 1 1201 1 1V8 A71 . F 4 ZN A 1 1202 2 ZN ZN . G 5 SO4 A 1 1203 1 SO4 SO4 . H 5 SO4 A 1 1204 4 SO4 SO4 . I 6 GOL C 1 1201 1 GOL GOL . J 4 ZN B 1 1201 1 ZN ZN . K 5 SO4 B 1 1202 2 SO4 SO4 . L 5 SO4 B 1 1203 3 SO4 SO4 . M 3 1V8 B 1 1204 1 1V8 A71 . N 7 HOH A 1 1301 4 HOH HOH . N 7 HOH A 2 1302 8 HOH HOH . N 7 HOH A 3 1303 9 HOH HOH . N 7 HOH A 4 1304 14 HOH HOH . N 7 HOH A 5 1305 15 HOH HOH . N 7 HOH A 6 1306 19 HOH HOH . N 7 HOH A 7 1307 20 HOH HOH . N 7 HOH A 8 1308 21 HOH HOH . N 7 HOH A 9 1309 22 HOH HOH . N 7 HOH A 10 1310 23 HOH HOH . N 7 HOH A 11 1311 25 HOH HOH . N 7 HOH A 12 1312 28 HOH HOH . N 7 HOH A 13 1313 29 HOH HOH . N 7 HOH A 14 1314 36 HOH HOH . N 7 HOH A 15 1315 39 HOH HOH . N 7 HOH A 16 1316 40 HOH HOH . N 7 HOH A 17 1317 44 HOH HOH . N 7 HOH A 18 1318 45 HOH HOH . N 7 HOH A 19 1319 48 HOH HOH . N 7 HOH A 20 1320 49 HOH HOH . N 7 HOH A 21 1321 52 HOH HOH . N 7 HOH A 22 1322 54 HOH HOH . N 7 HOH A 23 1323 55 HOH HOH . N 7 HOH A 24 1324 56 HOH HOH . N 7 HOH A 25 1325 61 HOH HOH . N 7 HOH A 26 1326 62 HOH HOH . N 7 HOH A 27 1327 68 HOH HOH . N 7 HOH A 28 1328 69 HOH HOH . N 7 HOH A 29 1329 70 HOH HOH . N 7 HOH A 30 1330 71 HOH HOH . N 7 HOH A 31 1331 72 HOH HOH . N 7 HOH A 32 1332 73 HOH HOH . N 7 HOH A 33 1333 74 HOH HOH . N 7 HOH A 34 1334 75 HOH HOH . N 7 HOH A 35 1335 76 HOH HOH . N 7 HOH A 36 1336 77 HOH HOH . N 7 HOH A 37 1337 78 HOH HOH . N 7 HOH A 38 1338 79 HOH HOH . N 7 HOH A 39 1339 80 HOH HOH . N 7 HOH A 40 1340 88 HOH HOH . N 7 HOH A 41 1341 89 HOH HOH . N 7 HOH A 42 1342 90 HOH HOH . N 7 HOH A 43 1343 91 HOH HOH . N 7 HOH A 44 1344 97 HOH HOH . N 7 HOH A 45 1345 98 HOH HOH . N 7 HOH A 46 1346 99 HOH HOH . N 7 HOH A 47 1347 100 HOH HOH . N 7 HOH A 48 1348 103 HOH HOH . N 7 HOH A 49 1349 108 HOH HOH . N 7 HOH A 50 1350 111 HOH HOH . N 7 HOH A 51 1351 112 HOH HOH . N 7 HOH A 52 1352 113 HOH HOH . N 7 HOH A 53 1353 123 HOH HOH . N 7 HOH A 54 1354 125 HOH HOH . N 7 HOH A 55 1355 127 HOH HOH . N 7 HOH A 56 1356 129 HOH HOH . N 7 HOH A 57 1357 132 HOH HOH . N 7 HOH A 58 1358 133 HOH HOH . N 7 HOH A 59 1359 134 HOH HOH . N 7 HOH A 60 1360 136 HOH HOH . N 7 HOH A 61 1361 137 HOH HOH . N 7 HOH A 62 1362 138 HOH HOH . N 7 HOH A 63 1363 145 HOH HOH . N 7 HOH A 64 1364 146 HOH HOH . N 7 HOH A 65 1365 150 HOH HOH . N 7 HOH A 66 1366 151 HOH HOH . N 7 HOH A 67 1367 152 HOH HOH . N 7 HOH A 68 1368 155 HOH HOH . N 7 HOH A 69 1369 158 HOH HOH . N 7 HOH A 70 1370 161 HOH HOH . N 7 HOH A 71 1371 162 HOH HOH . N 7 HOH A 72 1372 163 HOH HOH . N 7 HOH A 73 1373 164 HOH HOH . N 7 HOH A 74 1374 165 HOH HOH . N 7 HOH A 75 1375 166 HOH HOH . N 7 HOH A 76 1376 167 HOH HOH . N 7 HOH A 77 1377 168 HOH HOH . N 7 HOH A 78 1378 169 HOH HOH . N 7 HOH A 79 1379 171 HOH HOH . N 7 HOH A 80 1380 181 HOH HOH . N 7 HOH A 81 1381 182 HOH HOH . O 7 HOH C 1 1301 3 HOH HOH . O 7 HOH C 2 1302 31 HOH HOH . O 7 HOH C 3 1303 42 HOH HOH . O 7 HOH C 4 1304 57 HOH HOH . O 7 HOH C 5 1305 60 HOH HOH . O 7 HOH C 6 1306 102 HOH HOH . O 7 HOH C 7 1307 109 HOH HOH . O 7 HOH C 8 1308 128 HOH HOH . O 7 HOH C 9 1309 130 HOH HOH . O 7 HOH C 10 1310 156 HOH HOH . O 7 HOH C 11 1311 170 HOH HOH . O 7 HOH C 12 1312 179 HOH HOH . O 7 HOH C 13 1313 180 HOH HOH . P 7 HOH B 1 1301 2 HOH HOH . P 7 HOH B 2 1302 5 HOH HOH . P 7 HOH B 3 1303 10 HOH HOH . P 7 HOH B 4 1304 11 HOH HOH . P 7 HOH B 5 1305 12 HOH HOH . P 7 HOH B 6 1306 13 HOH HOH . P 7 HOH B 7 1307 17 HOH HOH . P 7 HOH B 8 1308 18 HOH HOH . P 7 HOH B 9 1309 24 HOH HOH . P 7 HOH B 10 1310 26 HOH HOH . P 7 HOH B 11 1311 30 HOH HOH . P 7 HOH B 12 1312 32 HOH HOH . P 7 HOH B 13 1313 33 HOH HOH . P 7 HOH B 14 1314 34 HOH HOH . P 7 HOH B 15 1315 35 HOH HOH . P 7 HOH B 16 1316 37 HOH HOH . P 7 HOH B 17 1317 38 HOH HOH . P 7 HOH B 18 1318 43 HOH HOH . P 7 HOH B 19 1319 46 HOH HOH . P 7 HOH B 20 1320 50 HOH HOH . P 7 HOH B 21 1321 51 HOH HOH . P 7 HOH B 22 1322 58 HOH HOH . P 7 HOH B 23 1323 59 HOH HOH . P 7 HOH B 24 1324 63 HOH HOH . P 7 HOH B 25 1325 64 HOH HOH . P 7 HOH B 26 1326 65 HOH HOH . P 7 HOH B 27 1327 66 HOH HOH . P 7 HOH B 28 1328 67 HOH HOH . P 7 HOH B 29 1329 82 HOH HOH . P 7 HOH B 30 1330 83 HOH HOH . P 7 HOH B 31 1331 84 HOH HOH . P 7 HOH B 32 1332 85 HOH HOH . P 7 HOH B 33 1333 86 HOH HOH . P 7 HOH B 34 1334 92 HOH HOH . P 7 HOH B 35 1335 94 HOH HOH . P 7 HOH B 36 1336 95 HOH HOH . P 7 HOH B 37 1337 96 HOH HOH . P 7 HOH B 38 1338 104 HOH HOH . P 7 HOH B 39 1339 106 HOH HOH . P 7 HOH B 40 1340 110 HOH HOH . P 7 HOH B 41 1341 114 HOH HOH . P 7 HOH B 42 1342 115 HOH HOH . P 7 HOH B 43 1343 116 HOH HOH . P 7 HOH B 44 1344 118 HOH HOH . P 7 HOH B 45 1345 120 HOH HOH . P 7 HOH B 46 1346 121 HOH HOH . P 7 HOH B 47 1347 122 HOH HOH . P 7 HOH B 48 1348 124 HOH HOH . P 7 HOH B 49 1349 131 HOH HOH . P 7 HOH B 50 1350 135 HOH HOH . P 7 HOH B 51 1351 139 HOH HOH . P 7 HOH B 52 1352 140 HOH HOH . P 7 HOH B 53 1353 141 HOH HOH . P 7 HOH B 54 1354 142 HOH HOH . P 7 HOH B 55 1355 143 HOH HOH . P 7 HOH B 56 1356 144 HOH HOH . P 7 HOH B 57 1357 147 HOH HOH . P 7 HOH B 58 1358 149 HOH HOH . P 7 HOH B 59 1359 153 HOH HOH . P 7 HOH B 60 1360 154 HOH HOH . P 7 HOH B 61 1361 157 HOH HOH . P 7 HOH B 62 1362 159 HOH HOH . P 7 HOH B 63 1363 160 HOH HOH . P 7 HOH B 64 1364 172 HOH HOH . P 7 HOH B 65 1365 173 HOH HOH . P 7 HOH B 66 1366 174 HOH HOH . P 7 HOH B 67 1367 175 HOH HOH . P 7 HOH B 68 1368 176 HOH HOH . P 7 HOH B 69 1369 177 HOH HOH . P 7 HOH B 70 1370 178 HOH HOH . Q 7 HOH D 1 1201 7 HOH HOH . Q 7 HOH D 2 1202 16 HOH HOH . Q 7 HOH D 3 1203 27 HOH HOH . Q 7 HOH D 4 1204 41 HOH HOH . Q 7 HOH D 5 1205 47 HOH HOH . Q 7 HOH D 6 1206 53 HOH HOH . Q 7 HOH D 7 1207 81 HOH HOH . Q 7 HOH D 8 1208 93 HOH HOH . Q 7 HOH D 9 1209 101 HOH HOH . Q 7 HOH D 10 1210 105 HOH HOH . Q 7 HOH D 11 1211 107 HOH HOH . Q 7 HOH D 12 1212 148 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAI 1V8 . . . M 3 8.409 -7.246 19.353 1 37.25 ? CAI 1V8 1204 B 1 HETATM 2 C CAH 1V8 . . . M 3 8.299 -7.128 20.682 1 45.26 ? CAH 1V8 1204 B 1 HETATM 3 O OAK 1V8 . . . M 3 7.516 -7.847 21.525 1 50.76 ? OAK 1V8 1204 B 1 HETATM 4 C CAM 1V8 . . . M 3 8.11 -7.531 22.837 1 52.39 ? CAM 1V8 1204 B 1 HETATM 5 O OAL 1V8 . . . M 3 8.758 -6.25 22.705 1 49.94 ? OAL 1V8 1204 B 1 HETATM 6 C CAJ 1V8 . . . M 3 9.011 -6.2 21.369 1 47.02 ? CAJ 1V8 1204 B 1 HETATM 7 C CAP 1V8 . . . M 3 9.849 -5.384 20.744 1 40.49 ? CAP 1V8 1204 B 1 HETATM 8 C CAO 1V8 . . . M 3 10.004 -5.466 19.367 1 37.89 ? CAO 1V8 1204 B 1 HETATM 9 C CAG 1V8 . . . M 3 9.28 -6.411 18.645 1 33.61 ? CAG 1V8 1204 B 1 HETATM 10 C CAA 1V8 . . . M 3 9.459 -6.46 17.26 1 27.94 ? CAA 1V8 1204 B 1 HETATM 11 O OAC 1V8 . . . M 3 10.455 -5.618 16.836 1 22.18 ? OAC 1V8 1204 B 1 HETATM 12 C CAF 1V8 . . . M 3 10.696 -5.495 15.514 1 21.12 ? CAF 1V8 1204 B 1 HETATM 13 C CAR 1V8 . . . M 3 11.659 -4.571 15.092 1 19.99 ? CAR 1V8 1204 B 1 HETATM 14 C CAT 1V8 . . . M 3 11.903 -4.418 13.744 1 20.68 ? CAT 1V8 1204 B 1 HETATM 15 C CAS 1V8 . . . M 3 11.181 -5.191 12.82 1 20.57 ? CAS 1V8 1204 B 1 HETATM 16 C CAQ 1V8 . . . M 3 10.222 -6.123 13.243 1 19.92 ? CAQ 1V8 1204 B 1 HETATM 17 C CAE 1V8 . . . M 3 9.983 -6.313 14.605 1 20.36 ? CAE 1V8 1204 B 1 HETATM 18 C CAD 1V8 . . . M 3 9.013 -7.239 15.033 1 22.11 ? CAD 1V8 1204 B 1 HETATM 19 O OAN 1V8 . . . M 3 8.417 -7.996 14.233 1 20.62 ? OAN 1V8 1204 B 1 HETATM 20 C CAB 1V8 . . . M 3 8.705 -7.265 16.382 1 22.52 ? CAB 1V8 1204 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 20 #