data_4L2M
#
_model_server_result.job_id            wMSZ-r5fyhykPkMs0383yA 
_model_server_result.datetime_utc      '2024-11-20 15:25:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4l2m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    4L2M 
#
_exptl.entry_id    4L2M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              618.503 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'HEME B/C' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.21 
_cell.angle_gamma         90 
_cell.entry_id            4L2M 
_cell.length_a            50.622 
_cell.length_b            40.951 
_cell.length_c            66.461 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4L2M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,J 1 1 
B,F,G,H,I,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NE2 HIS 116 A HIS 117 1_555 C CAB HEB . A HEB 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? 
covale ? covale2 B NE2 HIS 116 B HIS 117 1_555 F CAB HEB . B HEB 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? 
metalc ? metalc1 A NE2 HIS 69 A HIS 70 1_555 C FE HEB . A HEB 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc2 C FE HEB . A HEB 201 1_555 D C CYN . A CYN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? 
metalc ? metalc3 B NE2 HIS 69 B HIS 70 1_555 F FE HEB . B HEB 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
metalc ? metalc4 F FE HEB . B HEB 201 1_555 G C CYN . B CYN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.883 ? 
#
_chem_comp.formula           'C34 H34 Fe N4 O4' 
_chem_comp.formula_weight    618.503 
_chem_comp.id                HEB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HEME B/C' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'HYBRID BETWEEN B AND C TYPE HEMES (PROTOPORPHYRIN IX CONTAINING FE)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE NA HEB sing 117 n n 
FE NB HEB sing 118 n n 
FE NC HEB sing 119 n n 
FE ND HEB sing 120 n n 
CHA C1A HEB doub 121 n n 
CHA C4D HEB sing 122 n n 
CHA HHA HEB sing 123 n n 
CHB C4A HEB doub 124 n n 
CHB C1B HEB sing 125 n n 
CHB HHB HEB sing 126 n n 
CHC C4B HEB doub 127 n n 
CHC C1C HEB sing 128 n n 
CHC HHC HEB sing 129 n n 
CHD C4C HEB sing 130 n n 
CHD C1D HEB doub 131 n n 
CHD HHD HEB sing 132 n n 
NA C1A HEB sing 133 n n 
NA C4A HEB sing 134 n n 
C1A C2A HEB sing 135 n n 
C2A C3A HEB doub 136 n n 
C2A CAA HEB sing 137 n n 
C3A C4A HEB sing 138 n n 
C3A CMA HEB sing 139 n n 
CMA HMA1 HEB sing 140 n n 
CMA HMA2 HEB sing 141 n n 
CMA HMA3 HEB sing 142 n n 
CAA CBA HEB sing 143 n n 
CAA HAA1 HEB sing 144 n n 
CAA HAA2 HEB sing 145 n n 
CBA CGA HEB sing 146 n n 
CBA HBA1 HEB sing 147 n n 
CBA HBA2 HEB sing 148 n n 
CGA O1A HEB doub 149 n n 
CGA O2A HEB sing 150 n n 
O2A H2A HEB sing 151 n n 
NB C1B HEB doub 152 n n 
NB C4B HEB sing 153 n n 
C1B C2B HEB sing 154 n n 
C2B C3B HEB doub 155 n n 
C2B CMB HEB sing 156 n n 
C3B C4B HEB sing 157 n n 
C3B CAB HEB sing 158 n n 
CMB HMB1 HEB sing 159 n n 
CMB HMB2 HEB sing 160 n n 
CMB HMB3 HEB sing 161 n n 
CAB CBB HEB sing 162 n n 
CAB HAB HEB sing 163 n n 
CAB HAB2 HEB sing 164 n n 
CBB HBB1 HEB sing 165 n n 
CBB HBB2 HEB sing 166 n n 
CBB HBB3 HEB sing 167 n n 
NC C1C HEB sing 168 n y 
NC C4C HEB sing 169 n y 
C1C C2C HEB doub 170 n y 
C2C C3C HEB sing 171 n y 
C2C CMC HEB sing 172 n n 
C3C C4C HEB doub 173 n y 
C3C CAC HEB sing 174 n n 
CMC HMC1 HEB sing 175 n n 
CMC HMC2 HEB sing 176 n n 
CMC HMC3 HEB sing 177 n n 
CAC CBC HEB doub 178 n n 
CAC HAC HEB sing 179 n n 
CBC HBC1 HEB sing 180 n n 
CBC HBC2 HEB sing 181 n n 
ND C1D HEB sing 182 n n 
ND C4D HEB doub 183 n n 
C1D C2D HEB sing 184 n n 
C2D C3D HEB doub 185 n n 
C2D CMD HEB sing 186 n n 
C3D C4D HEB sing 187 n n 
C3D CAD HEB sing 188 n n 
CMD HMD1 HEB sing 189 n n 
CMD HMD2 HEB sing 190 n n 
CMD HMD3 HEB sing 191 n n 
CAD CBD HEB sing 192 n n 
CAD HAD1 HEB sing 193 n n 
CAD HAD2 HEB sing 194 n n 
CBD CGD HEB sing 195 n n 
CBD HBD1 HEB sing 196 n n 
CBD HBD2 HEB sing 197 n n 
CGD O1D HEB doub 198 n n 
CGD O2D HEB sing 199 n n 
O2D H2D HEB sing 200 n n 
#
_atom_sites.entry_id                     4L2M 
_atom_sites.fract_transf_matrix[1][1]    0.019754 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007667 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024419 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01614 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEB A 1 201 125 HEB HEB . 
D 3 CYN A 1 202 1 CYN CYN . 
E 4 SO4 A 1 203 2 SO4 SO4 . 
F 2 HEB B 1 201 126 HEB HEB . 
G 3 CYN B 1 202 2 CYN CYN . 
H 4 SO4 B 1 203 1 SO4 SO4 . 
I 4 SO4 B 1 204 3 SO4 SO4 . 
J 5 HOH A 1 301 7 HOH HOH . 
J 5 HOH A 2 302 12 HOH HOH . 
J 5 HOH A 3 303 14 HOH HOH . 
J 5 HOH A 4 304 16 HOH HOH . 
J 5 HOH A 5 305 20 HOH HOH . 
J 5 HOH A 6 306 21 HOH HOH . 
J 5 HOH A 7 307 23 HOH HOH . 
J 5 HOH A 8 308 25 HOH HOH . 
J 5 HOH A 9 309 26 HOH HOH . 
J 5 HOH A 10 310 34 HOH HOH . 
J 5 HOH A 11 311 35 HOH HOH . 
J 5 HOH A 12 312 37 HOH HOH . 
J 5 HOH A 13 313 42 HOH HOH . 
J 5 HOH A 14 314 43 HOH HOH . 
J 5 HOH A 15 315 44 HOH HOH . 
J 5 HOH A 16 316 45 HOH HOH . 
J 5 HOH A 17 317 54 HOH HOH . 
J 5 HOH A 18 318 55 HOH HOH . 
K 5 HOH B 1 301 2 HOH HOH . 
K 5 HOH B 2 302 3 HOH HOH . 
K 5 HOH B 3 303 4 HOH HOH . 
K 5 HOH B 4 304 8 HOH HOH . 
K 5 HOH B 5 305 9 HOH HOH . 
K 5 HOH B 6 306 11 HOH HOH . 
K 5 HOH B 7 307 17 HOH HOH . 
K 5 HOH B 8 308 19 HOH HOH . 
K 5 HOH B 9 309 27 HOH HOH . 
K 5 HOH B 10 310 29 HOH HOH . 
K 5 HOH B 11 311 31 HOH HOH . 
K 5 HOH B 12 312 33 HOH HOH . 
K 5 HOH B 13 313 36 HOH HOH . 
K 5 HOH B 14 314 38 HOH HOH . 
K 5 HOH B 15 315 40 HOH HOH . 
K 5 HOH B 16 316 41 HOH HOH . 
K 5 HOH B 17 317 48 HOH HOH . 
K 5 HOH B 18 318 51 HOH HOH . 
K 5 HOH B 19 319 52 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HEB . . . C 2 0.88 4.7 26.013 1 25.97 ? FE HEB 201 A 1 
HETATM 2 C CHA HEB . . . C 2 -0.134 6.267 23.131 1 27.13 ? CHA HEB 201 A 1 
HETATM 3 C CHB HEB . . . C 2 0.902 1.647 24.411 1 27.03 ? CHB HEB 201 A 1 
HETATM 4 C CHC HEB . . . C 2 2.902 3.467 28.527 1 28.65 ? CHC HEB 201 A 1 
HETATM 5 C CHD HEB . . . C 2 -0.139 7.354 27.937 1 29.31 ? CHD HEB 201 A 1 
HETATM 6 N NA HEB . . . C 2 0.49 4.06 24.095 1 24.92 ? NA HEB 201 A 1 
HETATM 7 C C1A HEB . . . C 2 0.093 4.815 23.024 1 27.47 ? C1A HEB 201 A 1 
HETATM 8 C C2A HEB . . . C 2 -0.207 4.039 21.827 1 26.06 ? C2A HEB 201 A 1 
HETATM 9 C C3A HEB . . . C 2 0.092 2.662 22.236 1 27.39 ? C3A HEB 201 A 1 
HETATM 10 C C4A HEB . . . C 2 0.466 2.79 23.634 1 26.33 ? C4A HEB 201 A 1 
HETATM 11 C CMA HEB . . . C 2 0.005 1.386 21.428 1 31.59 ? CMA HEB 201 A 1 
HETATM 12 C CAA HEB . . . C 2 -0.636 4.539 20.471 1 34.57 ? CAA HEB 201 A 1 
HETATM 13 C CBA HEB . . . C 2 0.503 4.26 19.483 1 36.13 ? CBA HEB 201 A 1 
HETATM 14 C CGA HEB . . . C 2 0.138 4.79 18.103 1 40.92 ? CGA HEB 201 A 1 
HETATM 15 O O1A HEB . . . C 2 -0.205 5.98 17.993 1 43.41 ? O1A HEB 201 A 1 
HETATM 16 O O2A HEB . . . C 2 0.239 4.033 17.122 1 38.41 ? O2A HEB 201 A 1 
HETATM 17 N NB HEB . . . C 2 1.746 2.864 26.41 1 29.43 ? NB HEB 201 A 1 
HETATM 18 C C1B HEB . . . C 2 1.653 1.727 25.649 1 25.46 ? C1B HEB 201 A 1 
HETATM 19 C C2B HEB . . . C 2 2.348 0.586 26.194 1 26.07 ? C2B HEB 201 A 1 
HETATM 20 C C3B HEB . . . C 2 2.966 1.074 27.394 1 27.7 ? C3B HEB 201 A 1 
HETATM 21 C C4B HEB . . . C 2 2.527 2.491 27.476 1 28.03 ? C4B HEB 201 A 1 
HETATM 22 C CMB HEB . . . C 2 2.422 -0.805 25.617 1 33.32 ? CMB HEB 201 A 1 
HETATM 23 C CAB HEB . . . C 2 3.842 0.228 28.285 1 33.42 ? CAB HEB 201 A 1 
HETATM 24 C CBB HEB . . . C 2 2.885 -0.278 29.371 1 29.5 ? CBB HEB 201 A 1 
HETATM 25 N NC HEB . . . C 2 1.335 5.341 27.908 1 23.77 ? NC HEB 201 A 1 
HETATM 26 C C1C HEB . . . C 2 2.141 4.708 28.818 1 27.48 ? C1C HEB 201 A 1 
HETATM 27 C C2C HEB . . . C 2 2.303 5.434 30.079 1 27.02 ? C2C HEB 201 A 1 
HETATM 28 C C3C HEB . . . C 2 1.409 6.573 29.901 1 28.7 ? C3C HEB 201 A 1 
HETATM 29 C C4C HEB . . . C 2 0.784 6.392 28.59 1 27.4 ? C4C HEB 201 A 1 
HETATM 30 C CMC HEB . . . C 2 3.17 5.075 31.276 1 30.09 ? CMC HEB 201 A 1 
HETATM 31 C CAC HEB . . . C 2 1.061 7.503 31.021 1 29.75 ? CAC HEB 201 A 1 
HETATM 32 C CBC HEB . . . C 2 -0.105 8.045 31.115 1 33.19 ? CBC HEB 201 A 1 
HETATM 33 N ND HEB . . . C 2 0.086 6.519 25.583 1 25.09 ? ND HEB 201 A 1 
HETATM 34 C C1D HEB . . . C 2 -0.395 7.437 26.493 1 29.76 ? C1D HEB 201 A 1 
HETATM 35 C C2D HEB . . . C 2 -1.039 8.608 25.87 1 29.6 ? C2D HEB 201 A 1 
HETATM 36 C C3D HEB . . . C 2 -0.965 8.313 24.451 1 29.16 ? C3D HEB 201 A 1 
HETATM 37 C C4D HEB . . . C 2 -0.343 6.979 24.39 1 26.7 ? C4D HEB 201 A 1 
HETATM 38 C CMD HEB . . . C 2 -1.585 9.874 26.514 1 31.87 ? CMD HEB 201 A 1 
HETATM 39 C CAD HEB . . . C 2 -1.56 9.153 23.338 1 31.78 ? CAD HEB 201 A 1 
HETATM 40 C CBD HEB . . . C 2 -0.547 9.92 22.533 1 36.41 ? CBD HEB 201 A 1 
HETATM 41 C CGD HEB . . . C 2 -1.272 10.567 21.339 1 41.89 ? CGD HEB 201 A 1 
HETATM 42 O O1D HEB . . . C 2 -0.594 10.864 20.337 1 53.82 ? O1D HEB 201 A 1 
HETATM 43 O O2D HEB . . . C 2 -2.526 10.75 21.38 1 39.86 ? O2D HEB 201 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           261 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#