data_4L2X # _model_server_result.job_id VkwUgJtl4DQCINTHs2JXyw _model_server_result.datetime_utc '2024-11-28 19:34:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4l2x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 4L2X # _exptl.entry_id 4L2X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4L2X _cell.length_a 111.34 _cell.length_b 111.34 _cell.length_c 68.77 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4L2X _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 125 F ASP 103 1_555 D MG MG . F MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc2 A OD2 ASP 125 F ASP 103 1_555 E MG MG . F MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc3 A OD2 ASP 129 F ASP 107 1_555 D MG MG . F MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc4 A OD2 ASP 129 F ASP 107 1_555 E MG MG . F MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc5 A OD2 ASP 265 F ASP 243 1_555 F MG MG . F MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc6 B OAV YL2 . F YL2 401 1_555 D MG MG . F MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc7 B OAZ YL2 . F YL2 401 1_555 D MG MG . F MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc8 B OAV YL2 . F YL2 401 1_555 E MG MG . F MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc9 B OAY YL2 . F YL2 401 1_555 F MG MG . F MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.726 ? metalc ? metalc10 B OAW YL2 . F YL2 401 1_555 F MG MG . F MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc11 D MG MG . F MG 403 1_555 G O HOH . F HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc12 D MG MG . F MG 403 1_555 G O HOH . F HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc13 E MG MG . F MG 404 1_555 G O HOH . F HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? metalc ? metalc14 E MG MG . F MG 404 1_555 G O HOH . F HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc15 E MG MG . F MG 404 1_555 G O HOH . F HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc16 F MG MG . F MG 405 1_555 G O HOH . F HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc17 F MG MG . F MG 405 1_555 G O HOH . F HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc18 F MG MG . F MG 405 1_555 G O HOH . F HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4L2X _atom_sites.fract_transf_matrix[1][1] 0.008981 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008981 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014541 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 YL2 F 1 401 1 YL2 YL2 . C 3 POP F 1 402 1 POP POP . D 4 MG F 1 403 1 MG MG . E 4 MG F 1 404 1 MG MG . F 4 MG F 1 405 1 MG MG . G 5 HOH F 1 501 1 HOH HOH . G 5 HOH F 2 502 2 HOH HOH . G 5 HOH F 3 503 3 HOH HOH . G 5 HOH F 4 504 4 HOH HOH . G 5 HOH F 5 505 5 HOH HOH . G 5 HOH F 6 506 6 HOH HOH . G 5 HOH F 7 507 7 HOH HOH . G 5 HOH F 8 508 8 HOH HOH . G 5 HOH F 9 509 9 HOH HOH . G 5 HOH F 10 510 10 HOH HOH . G 5 HOH F 11 511 11 HOH HOH . G 5 HOH F 12 512 12 HOH HOH . G 5 HOH F 13 513 13 HOH HOH . G 5 HOH F 14 514 14 HOH HOH . G 5 HOH F 15 515 15 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x 19.427 _atom_site.Cartn_y 32.656 _atom_site.Cartn_z -9.254 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 34.13 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 404 _atom_site.auth_asym_id F _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #