data_4L3A # _model_server_result.job_id PwwGMMf9HMFjFq6OIjYlpg _model_server_result.datetime_utc '2025-02-05 04:55:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4l3a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":602}' # _entry.id 4L3A # _exptl.entry_id 4L3A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4L3A _cell.length_a 115.34 _cell.length_b 115.34 _cell.length_c 190.71 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4L3A _symmetry.cell_setting ? _symmetry.Int_Tables_number 153 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 1 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 153 A ASP 153 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc2 A OD2 ASP 177 A ASP 177 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc3 C MG MG . A MG 601 1_555 I O HOH . A HOH 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc4 C MG MG . A MG 601 1_555 I O HOH . A HOH 735 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.804 ? metalc ? metalc5 E NA NA . A NA 603 1_555 I O HOH . A HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc6 B OD2 ASP 153 B ASP 153 1_555 H K K . B K 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc7 B OD2 ASP 177 B ASP 177 1_555 H K K . B K 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc8 H K K . B K 603 1_555 J O HOH . B HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc9 H K K . B K 603 1_555 J O HOH . B HOH 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 4L3A _atom_sites.fract_transf_matrix[1][1] 0.00867 _atom_sites.fract_transf_matrix[1][2] 0.005006 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010011 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005244 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 601 1 MG MG . D 2 MG A 1 602 1 MG MG . E 3 NA A 1 603 1 NA NA . F 2 MG B 1 601 1 MG MG . G 4 GOL B 1 602 202 GOL GOL . H 5 K B 1 603 1 K K . I 6 HOH A 1 701 1 HOH HOH . I 6 HOH A 2 702 9 HOH HOH . I 6 HOH A 3 703 10 HOH HOH . I 6 HOH A 4 704 13 HOH HOH . I 6 HOH A 5 705 15 HOH HOH . I 6 HOH A 6 706 17 HOH HOH . I 6 HOH A 7 707 18 HOH HOH . I 6 HOH A 8 708 20 HOH HOH . I 6 HOH A 9 709 21 HOH HOH . I 6 HOH A 10 710 22 HOH HOH . I 6 HOH A 11 711 23 HOH HOH . I 6 HOH A 12 712 26 HOH HOH . I 6 HOH A 13 713 27 HOH HOH . I 6 HOH A 14 714 30 HOH HOH . I 6 HOH A 15 715 33 HOH HOH . I 6 HOH A 16 716 35 HOH HOH . I 6 HOH A 17 717 43 HOH HOH . I 6 HOH A 18 718 50 HOH HOH . I 6 HOH A 19 719 51 HOH HOH . I 6 HOH A 20 720 52 HOH HOH . I 6 HOH A 21 721 59 HOH HOH . I 6 HOH A 22 722 61 HOH HOH . I 6 HOH A 23 723 64 HOH HOH . I 6 HOH A 24 724 65 HOH HOH . I 6 HOH A 25 725 70 HOH HOH . I 6 HOH A 26 726 73 HOH HOH . I 6 HOH A 27 727 74 HOH HOH . I 6 HOH A 28 728 75 HOH HOH . I 6 HOH A 29 729 76 HOH HOH . I 6 HOH A 30 730 77 HOH HOH . I 6 HOH A 31 731 81 HOH HOH . I 6 HOH A 32 732 83 HOH HOH . I 6 HOH A 33 733 84 HOH HOH . I 6 HOH A 34 734 85 HOH HOH . I 6 HOH A 35 735 86 HOH HOH . I 6 HOH A 36 736 90 HOH HOH . I 6 HOH A 37 737 94 HOH HOH . I 6 HOH A 38 738 99 HOH HOH . I 6 HOH A 39 739 100 HOH HOH . I 6 HOH A 40 740 101 HOH HOH . I 6 HOH A 41 741 108 HOH HOH . I 6 HOH A 42 742 112 HOH HOH . I 6 HOH A 43 743 115 HOH HOH . I 6 HOH A 44 744 116 HOH HOH . I 6 HOH A 45 745 118 HOH HOH . I 6 HOH A 46 746 119 HOH HOH . J 6 HOH B 1 701 2 HOH HOH . J 6 HOH B 2 702 3 HOH HOH . J 6 HOH B 3 703 4 HOH HOH . J 6 HOH B 4 704 5 HOH HOH . J 6 HOH B 5 705 6 HOH HOH . J 6 HOH B 6 706 7 HOH HOH . J 6 HOH B 7 707 8 HOH HOH . J 6 HOH B 8 708 11 HOH HOH . J 6 HOH B 9 709 12 HOH HOH . J 6 HOH B 10 710 14 HOH HOH . J 6 HOH B 11 711 16 HOH HOH . J 6 HOH B 12 712 19 HOH HOH . J 6 HOH B 13 713 24 HOH HOH . J 6 HOH B 14 714 25 HOH HOH . J 6 HOH B 15 715 28 HOH HOH . J 6 HOH B 16 716 29 HOH HOH . J 6 HOH B 17 717 31 HOH HOH . J 6 HOH B 18 718 32 HOH HOH . J 6 HOH B 19 719 34 HOH HOH . J 6 HOH B 20 720 36 HOH HOH . J 6 HOH B 21 721 37 HOH HOH . J 6 HOH B 22 722 38 HOH HOH . J 6 HOH B 23 723 39 HOH HOH . J 6 HOH B 24 724 40 HOH HOH . J 6 HOH B 25 725 41 HOH HOH . J 6 HOH B 26 726 42 HOH HOH . J 6 HOH B 27 727 44 HOH HOH . J 6 HOH B 28 728 45 HOH HOH . J 6 HOH B 29 729 46 HOH HOH . J 6 HOH B 30 730 47 HOH HOH . J 6 HOH B 31 731 48 HOH HOH . J 6 HOH B 32 732 49 HOH HOH . J 6 HOH B 33 733 53 HOH HOH . J 6 HOH B 34 734 54 HOH HOH . J 6 HOH B 35 735 55 HOH HOH . J 6 HOH B 36 736 56 HOH HOH . J 6 HOH B 37 737 57 HOH HOH . J 6 HOH B 38 738 58 HOH HOH . J 6 HOH B 39 739 60 HOH HOH . J 6 HOH B 40 740 62 HOH HOH . J 6 HOH B 41 741 63 HOH HOH . J 6 HOH B 42 742 66 HOH HOH . J 6 HOH B 43 743 67 HOH HOH . J 6 HOH B 44 744 68 HOH HOH . J 6 HOH B 45 745 69 HOH HOH . J 6 HOH B 46 746 71 HOH HOH . J 6 HOH B 47 747 72 HOH HOH . J 6 HOH B 48 748 78 HOH HOH . J 6 HOH B 49 749 79 HOH HOH . J 6 HOH B 50 750 80 HOH HOH . J 6 HOH B 51 751 82 HOH HOH . J 6 HOH B 52 752 87 HOH HOH . J 6 HOH B 53 753 88 HOH HOH . J 6 HOH B 54 754 89 HOH HOH . J 6 HOH B 55 755 91 HOH HOH . J 6 HOH B 56 756 92 HOH HOH . J 6 HOH B 57 757 93 HOH HOH . J 6 HOH B 58 758 95 HOH HOH . J 6 HOH B 59 759 96 HOH HOH . J 6 HOH B 60 760 97 HOH HOH . J 6 HOH B 61 761 98 HOH HOH . J 6 HOH B 62 762 102 HOH HOH . J 6 HOH B 63 763 103 HOH HOH . J 6 HOH B 64 764 104 HOH HOH . J 6 HOH B 65 765 105 HOH HOH . J 6 HOH B 66 766 106 HOH HOH . J 6 HOH B 67 767 107 HOH HOH . J 6 HOH B 68 768 109 HOH HOH . J 6 HOH B 69 769 110 HOH HOH . J 6 HOH B 70 770 111 HOH HOH . J 6 HOH B 71 771 113 HOH HOH . J 6 HOH B 72 772 114 HOH HOH . J 6 HOH B 73 773 117 HOH HOH . J 6 HOH B 74 774 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 4 0.066 -13.732 -30.035 1 63.87 ? C1 GOL 602 B 1 HETATM 2 O O1 GOL . . . G 4 -1.261 -14.231 -30.198 1 67.52 ? O1 GOL 602 B 1 HETATM 3 C C2 GOL . . . G 4 0.081 -12.207 -30.229 1 71.83 ? C2 GOL 602 B 1 HETATM 4 O O2 GOL . . . G 4 -0.86 -11.891 -31.28 1 71.6 ? O2 GOL 602 B 1 HETATM 5 C C3 GOL . . . G 4 -0.193 -11.383 -28.954 1 68.95 ? C3 GOL 602 B 1 HETATM 6 O O3 GOL . . . G 4 -1.5 -11.722 -28.484 1 75.5 ? O3 GOL 602 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #