data_4L3Q # _model_server_result.job_id zMfmaIS6hYsFFoIf4PbspQ _model_server_result.datetime_utc '2024-11-25 12:14:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4l3q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 4L3Q # _exptl.entry_id 4L3Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 283.348 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-{3-[(1-methyl-1H-imidazol-2-yl)sulfanyl]phenyl}pyridin-2(1H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4L3Q _cell.length_a 79.512 _cell.length_b 79.512 _cell.length_c 321.131 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4L3Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H13 N3 O S' _chem_comp.formula_weight 283.348 _chem_comp.id 926 _chem_comp.mon_nstd_flag . _chem_comp.name 6-{3-[(1-methyl-1H-imidazol-2-yl)sulfanyl]phenyl}pyridin-2(1H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O13 C3 926 doub 1 n n C3 C4 926 sing 2 n n C3 N2 926 sing 3 n n C4 C5 926 doub 4 n n N2 C1 926 sing 5 n n N16 C17 926 sing 6 n y N16 C15 926 doub 7 n y S14 C15 926 sing 8 n n S14 C8 926 sing 9 n n C17 C18 926 doub 10 n y C15 N19 926 sing 11 n y C9 C8 926 doub 12 n y C9 C10 926 sing 13 n y C5 C6 926 sing 14 n n C1 C10 926 sing 15 n n C1 C6 926 doub 16 n n C8 C7 926 sing 17 n y C10 C11 926 doub 18 n y C18 N19 926 sing 19 n y N19 C20 926 sing 20 n n C7 C12 926 doub 21 n y C11 C12 926 sing 22 n y C6 H1 926 sing 23 n n C5 H2 926 sing 24 n n C4 H3 926 sing 25 n n C11 H5 926 sing 26 n n C12 H6 926 sing 27 n n C7 H7 926 sing 28 n n C9 H8 926 sing 29 n n C18 H9 926 sing 30 n n C20 H10 926 sing 31 n n C20 H11 926 sing 32 n n C20 H12 926 sing 33 n n C17 H13 926 sing 34 n n N2 H14 926 sing 35 n n # _atom_sites.entry_id 4L3Q _atom_sites.fract_transf_matrix[1][1] 0.012577 _atom_sites.fract_transf_matrix[1][2] 0.007261 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014522 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003114 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GLC A 1 500 500 GLC GLC . C 3 926 A 1 501 501 926 926 . D 4 HOH A 1 601 1 HOH HOH . D 4 HOH A 2 602 2 HOH HOH . D 4 HOH A 3 603 3 HOH HOH . D 4 HOH A 4 604 4 HOH HOH . D 4 HOH A 5 605 5 HOH HOH . D 4 HOH A 6 606 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O13 926 . . . C 3 38.191 17.66 58.18 1 44.44 ? O13 926 501 A 1 HETATM 2 C C3 926 . . . C 3 37.962 17.521 59.398 1 44.18 ? C3 926 501 A 1 HETATM 3 N N2 926 . . . C 3 38.87 16.816 60.196 1 43.37 ? N2 926 501 A 1 HETATM 4 C C1 926 . . . C 3 38.806 16.571 61.534 1 41.86 ? C1 926 501 A 1 HETATM 5 C C6 926 . . . C 3 37.714 17.085 62.245 1 42.95 ? C6 926 501 A 1 HETATM 6 C C5 926 . . . C 3 36.741 17.829 61.506 1 44.29 ? C5 926 501 A 1 HETATM 7 C C4 926 . . . C 3 36.797 18.067 60.113 1 43.76 ? C4 926 501 A 1 HETATM 8 C C10 926 . . . C 3 39.94 15.745 62.079 1 39.26 ? C10 926 501 A 1 HETATM 9 C C11 926 . . . C 3 40.764 16.076 63.172 1 37.76 ? C11 926 501 A 1 HETATM 10 C C12 926 . . . C 3 41.833 15.187 63.552 1 37.77 ? C12 926 501 A 1 HETATM 11 C C7 926 . . . C 3 42.074 13.961 62.828 1 38.21 ? C7 926 501 A 1 HETATM 12 C C8 926 . . . C 3 41.22 13.637 61.722 1 38.84 ? C8 926 501 A 1 HETATM 13 C C9 926 . . . C 3 40.176 14.53 61.386 1 38.04 ? C9 926 501 A 1 HETATM 14 S S14 926 . . . C 3 41.263 12.196 60.663 1 39.54 ? S14 926 501 A 1 HETATM 15 C C15 926 . . . C 3 42.703 11.216 61.05 1 40.61 ? C15 926 501 A 1 HETATM 16 N N19 926 . . . C 3 42.789 10.342 62.142 1 40.19 ? N19 926 501 A 1 HETATM 17 C C18 926 . . . C 3 44.028 9.765 62.122 1 38.58 ? C18 926 501 A 1 HETATM 18 C C20 926 . . . C 3 41.69 10.137 63.104 1 37.75 ? C20 926 501 A 1 HETATM 19 N N16 926 . . . C 3 43.889 11.17 60.354 1 41.72 ? N16 926 501 A 1 HETATM 20 C C17 926 . . . C 3 44.706 10.273 61.024 1 40.16 ? C17 926 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #