data_4L3V
#
_model_server_result.job_id            q_681oidNpgTx9gStuS1xA 
_model_server_result.datetime_utc      '2024-11-29 19:30:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4l3v 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":602}' 
#
_entry.id    4L3V 
#
_exptl.entry_id    4L3V 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4L3V 
_cell.length_a            227.75 
_cell.length_b            342.655 
_cell.length_c            107.253 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4L3V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E 1 1,2 
B,C,F,G,H,I 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_353 -x-2,y,-z-3/2 -1 0 0 0 1 0 0 0 -1 -455.5 0 -160.8795 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 G N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 118 B LYS 119 1_555 D C4A PLP . B PLP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 doub 
covale ? covale2 B NZ LYS 118 A LYS 119 1_555 F C4A PLP . A PLP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 doub 
covale ? covale3 C NZ LYS 118 C LYS 119 1_555 H C4A PLP . C PLP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.363 doub 
metalc ? metalc1 A SG CYS 51 B CYS 52 1_555 E FE HEM . B HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc2 A NE2 HIS 64 B HIS 65 1_555 E FE HEM . B HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
metalc ? metalc3 B SG CYS 51 A CYS 52 1_555 G FE HEM . A HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? 
metalc ? metalc4 B NE2 HIS 64 A HIS 65 1_555 G FE HEM . A HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
metalc ? metalc5 C SG CYS 51 C CYS 52 1_555 I FE HEM . C HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc6 C NE2 HIS 64 C HIS 65 1_555 I FE HEM . C HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     4L3V 
_atom_sites.fract_transf_matrix[1][1]    0.004391 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.002918 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009324 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 PLP B 1 601 1000 PLP PLP . 
E 3 HEM B 1 602 2000 HEM HEM . 
F 2 PLP A 1 601 1000 PLP PLP . 
G 3 HEM A 1 602 2000 HEM HEM . 
H 2 PLP C 1 601 1000 PLP PLP . 
I 3 HEM C 1 602 2000 HEM HEM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . I 3 -223.1 417.777 -73.184 1 64.95 ? CHA HEM 602 C 1 
HETATM 2 C CHB HEM . . . I 3 -227.937 417.543 -73.462 1 65.02 ? CHB HEM 602 C 1 
HETATM 3 C CHC HEM . . . I 3 -228.275 417.955 -68.609 1 64.75 ? CHC HEM 602 C 1 
HETATM 4 C CHD HEM . . . I 3 -223.472 418.175 -68.332 1 64.66 ? CHD HEM 602 C 1 
HETATM 5 C C1A HEM . . . I 3 -224.371 417.566 -73.687 1 65.04 ? C1A HEM 602 C 1 
HETATM 6 C C2A HEM . . . I 3 -224.69 417.153 -75.037 1 65.18 ? C2A HEM 602 C 1 
HETATM 7 C C3A HEM . . . I 3 -226.029 417.081 -75.123 1 65.11 ? C3A HEM 602 C 1 
HETATM 8 C C4A HEM . . . I 3 -226.603 417.463 -73.837 1 65.04 ? C4A HEM 602 C 1 
HETATM 9 C CMA HEM . . . I 3 -226.84 416.685 -76.372 1 65.12 ? CMA HEM 602 C 1 
HETATM 10 C CAA HEM . . . I 3 -223.618 416.826 -76.11 1 65.33 ? CAA HEM 602 C 1 
HETATM 11 C CBA HEM . . . I 3 -223.615 417.771 -77.31 1 65.46 ? CBA HEM 602 C 1 
HETATM 12 C CGA HEM . . . I 3 -222.822 417.187 -78.466 1 65.56 ? CGA HEM 602 C 1 
HETATM 13 O O1A HEM . . . I 3 -221.663 416.731 -78.249 1 65.73 ? O1A HEM 602 C 1 
HETATM 14 O O2A HEM . . . I 3 -223.347 417.186 -79.619 1 65.6 ? O2A HEM 602 C 1 
HETATM 15 C C1B HEM . . . I 3 -228.434 417.638 -72.176 1 65 ? C1B HEM 602 C 1 
HETATM 16 C C2B HEM . . . I 3 -229.837 417.589 -71.826 1 65.07 ? C2B HEM 602 C 1 
HETATM 17 C C3B HEM . . . I 3 -229.943 417.699 -70.49 1 64.95 ? C3B HEM 602 C 1 
HETATM 18 C C4B HEM . . . I 3 -228.6 417.823 -69.949 1 64.86 ? C4B HEM 602 C 1 
HETATM 19 C CMB HEM . . . I 3 -230.96 417.416 -72.876 1 65.16 ? CMB HEM 602 C 1 
HETATM 20 C CAB HEM . . . I 3 -231.216 417.706 -69.601 1 64.95 ? CAB HEM 602 C 1 
HETATM 21 C CBB HEM . . . I 3 -232.476 417.628 -70.053 1 64.96 ? CBB HEM 602 C 1 
HETATM 22 C C1C HEM . . . I 3 -227.005 418.044 -68.108 1 64.67 ? C1C HEM 602 C 1 
HETATM 23 C C2C HEM . . . I 3 -226.648 418.224 -66.714 1 64.56 ? C2C HEM 602 C 1 
HETATM 24 C C3C HEM . . . I 3 -225.312 418.262 -66.641 1 64.5 ? C3C HEM 602 C 1 
HETATM 25 C C4C HEM . . . I 3 -224.802 418.147 -67.993 1 64.62 ? C4C HEM 602 C 1 
HETATM 26 C CMC HEM . . . I 3 -227.662 418.312 -65.554 1 64.54 ? CMC HEM 602 C 1 
HETATM 27 C CAC HEM . . . I 3 -224.397 418.462 -65.406 1 64.38 ? CAC HEM 602 C 1 
HETATM 28 C CBC HEM . . . I 3 -224.692 419.31 -64.417 1 64.29 ? CBC HEM 602 C 1 
HETATM 29 C C1D HEM . . . I 3 -222.918 418.201 -69.602 1 64.72 ? C1D HEM 602 C 1 
HETATM 30 C C2D HEM . . . I 3 -221.535 418.495 -69.931 1 64.7 ? C2D HEM 602 C 1 
HETATM 31 C C3D HEM . . . I 3 -221.414 418.376 -71.456 1 64.8 ? C3D HEM 602 C 1 
HETATM 32 C C4D HEM . . . I 3 -222.744 418.005 -71.879 1 64.86 ? C4D HEM 602 C 1 
HETATM 33 C CMD HEM . . . I 3 -220.408 418.865 -68.948 1 64.64 ? CMD HEM 602 C 1 
HETATM 34 C CAD HEM . . . I 3 -220.153 418.571 -72.345 1 64.86 ? CAD HEM 602 C 1 
HETATM 35 C CBD HEM . . . I 3 -220.209 419.823 -73.228 1 64.93 ? CBD HEM 602 C 1 
HETATM 36 C CGD HEM . . . I 3 -219.403 419.634 -74.499 1 65.08 ? CGD HEM 602 C 1 
HETATM 37 O O1D HEM . . . I 3 -219.134 418.464 -74.879 1 65.04 ? O1D HEM 602 C 1 
HETATM 38 O O2D HEM . . . I 3 -219.034 420.651 -75.149 1 65.11 ? O2D HEM 602 C 1 
HETATM 39 N NA HEM . . . I 3 -225.552 417.734 -72.988 1 65.01 ? NA HEM 602 C 1 
HETATM 40 N NB HEM . . . I 3 -227.71 417.792 -71.008 1 64.92 ? NB HEM 602 C 1 
HETATM 41 N NC HEM . . . I 3 -225.856 417.985 -68.865 1 64.71 ? NC HEM 602 C 1 
HETATM 42 N ND HEM . . . I 3 -223.596 417.936 -70.781 1 64.82 ? ND HEM 602 C 1 
HETATM 43 FE FE HEM . . . I 3 -225.697 417.863 -70.887 1 64.84 ? FE HEM 602 C 1 
#
_model_server_stats.io_time_ms              40 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           253 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#