data_4L40 # _model_server_result.job_id fcZUxjk-QDTxR4ViEBxv_A _model_server_result.datetime_utc '2024-11-23 23:54:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4l40 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 4L40 # _exptl.entry_id 4L40 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 312.53 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'icosanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4L40 _cell.length_a 59.63 _cell.length_b 59.63 _cell.length_c 244.17 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4L40 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 365 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 365 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.286 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H40 O2' _chem_comp.formula_weight 312.53 _chem_comp.id DCR _chem_comp.mon_nstd_flag . _chem_comp.name 'icosanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 DCR sing 83 n n O1 HO1 DCR sing 84 n n C2 C1 DCR sing 85 n n O2 C1 DCR doub 86 n n C3 C2 DCR sing 87 n n C2 H2 DCR sing 88 n n C2 H2A DCR sing 89 n n C4 C3 DCR sing 90 n n C3 H3 DCR sing 91 n n C3 H3A DCR sing 92 n n C4 C5 DCR sing 93 n n C4 H4 DCR sing 94 n n C4 H4A DCR sing 95 n n C6 C5 DCR sing 96 n n C5 H5 DCR sing 97 n n C5 H5A DCR sing 98 n n C6 C7 DCR sing 99 n n C6 H6 DCR sing 100 n n C6 H6A DCR sing 101 n n C8 C7 DCR sing 102 n n C7 H7 DCR sing 103 n n C7 H7A DCR sing 104 n n C9 C8 DCR sing 105 n n C8 H8 DCR sing 106 n n C8 H8A DCR sing 107 n n C10 C9 DCR sing 108 n n C9 H9 DCR sing 109 n n C9 H9A DCR sing 110 n n C11 C10 DCR sing 111 n n C10 H10 DCR sing 112 n n C10 H10A DCR sing 113 n n C12 C11 DCR sing 114 n n C11 H11 DCR sing 115 n n C11 H11A DCR sing 116 n n C13 C12 DCR sing 117 n n C12 H12 DCR sing 118 n n C12 H12A DCR sing 119 n n C14 C13 DCR sing 120 n n C13 H13 DCR sing 121 n n C13 H13A DCR sing 122 n n C15 C14 DCR sing 123 n n C14 H14 DCR sing 124 n n C14 H14A DCR sing 125 n n C15 C16 DCR sing 126 n n C15 H15 DCR sing 127 n n C15 H15A DCR sing 128 n n C16 C17 DCR sing 129 n n C16 H16 DCR sing 130 n n C16 H16A DCR sing 131 n n C18 C17 DCR sing 132 n n C17 H17 DCR sing 133 n n C17 H17A DCR sing 134 n n C18 C19 DCR sing 135 n n C18 H18 DCR sing 136 n n C18 H18A DCR sing 137 n n C20 C19 DCR sing 138 n n C19 H19 DCR sing 139 n n C19 H19A DCR sing 140 n n C20 H20 DCR sing 141 n n C20 H20A DCR sing 142 n n C20 H20B DCR sing 143 n n # _atom_sites.entry_id 4L40 _atom_sites.fract_transf_matrix[1][1] 0.01677 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01677 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004096 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 501 501 HEM HEM . C 3 DCR A 1 502 601 DCR AQZ . D 4 HOH A 1 601 1 HOH HOH . D 4 HOH A 2 602 2 HOH HOH . D 4 HOH A 3 603 3 HOH HOH . D 4 HOH A 4 604 4 HOH HOH . D 4 HOH A 5 605 5 HOH HOH . D 4 HOH A 6 606 6 HOH HOH . D 4 HOH A 7 607 7 HOH HOH . D 4 HOH A 8 608 8 HOH HOH . D 4 HOH A 9 609 9 HOH HOH . D 4 HOH A 10 610 11 HOH HOH . D 4 HOH A 11 611 12 HOH HOH . D 4 HOH A 12 612 13 HOH HOH . D 4 HOH A 13 613 14 HOH HOH . D 4 HOH A 14 614 15 HOH HOH . D 4 HOH A 15 615 16 HOH HOH . D 4 HOH A 16 616 17 HOH HOH . D 4 HOH A 17 617 18 HOH HOH . D 4 HOH A 18 618 19 HOH HOH . D 4 HOH A 19 619 20 HOH HOH . D 4 HOH A 20 620 21 HOH HOH . D 4 HOH A 21 621 23 HOH HOH . D 4 HOH A 22 622 24 HOH HOH . D 4 HOH A 23 623 25 HOH HOH . D 4 HOH A 24 624 26 HOH HOH . D 4 HOH A 25 625 27 HOH HOH . D 4 HOH A 26 626 28 HOH HOH . D 4 HOH A 27 627 29 HOH HOH . D 4 HOH A 28 628 30 HOH HOH . D 4 HOH A 29 629 31 HOH HOH . D 4 HOH A 30 630 32 HOH HOH . D 4 HOH A 31 631 35 HOH HOH . D 4 HOH A 32 632 36 HOH HOH . D 4 HOH A 33 633 37 HOH HOH . D 4 HOH A 34 634 39 HOH HOH . D 4 HOH A 35 635 40 HOH HOH . D 4 HOH A 36 636 41 HOH HOH . D 4 HOH A 37 637 42 HOH HOH . D 4 HOH A 38 638 45 HOH HOH . D 4 HOH A 39 639 46 HOH HOH . D 4 HOH A 40 640 48 HOH HOH . D 4 HOH A 41 641 49 HOH HOH . D 4 HOH A 42 642 50 HOH HOH . D 4 HOH A 43 643 51 HOH HOH . D 4 HOH A 44 644 52 HOH HOH . D 4 HOH A 45 645 53 HOH HOH . D 4 HOH A 46 646 54 HOH HOH . D 4 HOH A 47 647 56 HOH HOH . D 4 HOH A 48 648 57 HOH HOH . D 4 HOH A 49 649 59 HOH HOH . D 4 HOH A 50 650 60 HOH HOH . D 4 HOH A 51 651 62 HOH HOH . D 4 HOH A 52 652 63 HOH HOH . D 4 HOH A 53 653 64 HOH HOH . D 4 HOH A 54 654 65 HOH HOH . D 4 HOH A 55 655 66 HOH HOH . D 4 HOH A 56 656 67 HOH HOH . D 4 HOH A 57 657 68 HOH HOH . D 4 HOH A 58 658 69 HOH HOH . D 4 HOH A 59 659 71 HOH HOH . D 4 HOH A 60 660 72 HOH HOH . D 4 HOH A 61 661 75 HOH HOH . D 4 HOH A 62 662 76 HOH HOH . D 4 HOH A 63 663 77 HOH HOH . D 4 HOH A 64 664 78 HOH HOH . D 4 HOH A 65 665 79 HOH HOH . D 4 HOH A 66 666 80 HOH HOH . D 4 HOH A 67 667 81 HOH HOH . D 4 HOH A 68 668 83 HOH HOH . D 4 HOH A 69 669 84 HOH HOH . D 4 HOH A 70 670 90 HOH HOH . D 4 HOH A 71 671 92 HOH HOH . D 4 HOH A 72 672 97 HOH HOH . D 4 HOH A 73 673 99 HOH HOH . D 4 HOH A 74 674 100 HOH HOH . D 4 HOH A 75 675 102 HOH HOH . D 4 HOH A 76 676 105 HOH HOH . D 4 HOH A 77 677 107 HOH HOH . D 4 HOH A 78 678 108 HOH HOH . D 4 HOH A 79 679 109 HOH HOH . D 4 HOH A 80 680 114 HOH HOH . D 4 HOH A 81 681 115 HOH HOH . D 4 HOH A 82 682 117 HOH HOH . D 4 HOH A 83 683 118 HOH HOH . D 4 HOH A 84 684 119 HOH HOH . D 4 HOH A 85 685 120 HOH HOH . D 4 HOH A 86 686 121 HOH HOH . D 4 HOH A 87 687 122 HOH HOH . D 4 HOH A 88 688 123 HOH HOH . D 4 HOH A 89 689 124 HOH HOH . D 4 HOH A 90 690 125 HOH HOH . D 4 HOH A 91 691 126 HOH HOH . D 4 HOH A 92 692 127 HOH HOH . D 4 HOH A 93 693 128 HOH HOH . D 4 HOH A 94 694 131 HOH HOH . D 4 HOH A 95 695 133 HOH HOH . D 4 HOH A 96 696 136 HOH HOH . D 4 HOH A 97 697 137 HOH HOH . D 4 HOH A 98 698 140 HOH HOH . D 4 HOH A 99 699 141 HOH HOH . D 4 HOH A 100 700 142 HOH HOH . D 4 HOH A 101 701 144 HOH HOH . D 4 HOH A 102 702 145 HOH HOH . D 4 HOH A 103 703 147 HOH HOH . D 4 HOH A 104 704 148 HOH HOH . D 4 HOH A 105 705 149 HOH HOH . D 4 HOH A 106 706 150 HOH HOH . D 4 HOH A 107 707 151 HOH HOH . D 4 HOH A 108 708 154 HOH HOH . D 4 HOH A 109 709 155 HOH HOH . D 4 HOH A 110 710 156 HOH HOH . D 4 HOH A 111 711 157 HOH HOH . D 4 HOH A 112 712 1 HOH HOH . D 4 HOH A 113 713 3 HOH HOH . D 4 HOH A 114 714 4 HOH HOH . D 4 HOH A 115 715 5 HOH HOH . D 4 HOH A 116 716 8 HOH HOH . D 4 HOH A 117 717 11 HOH HOH . D 4 HOH A 118 718 17 HOH HOH . D 4 HOH A 119 719 19 HOH HOH . D 4 HOH A 120 720 21 HOH HOH . D 4 HOH A 121 721 23 HOH HOH . D 4 HOH A 122 722 32 HOH HOH . D 4 HOH A 123 723 33 HOH HOH . D 4 HOH A 124 724 35 HOH HOH . D 4 HOH A 125 725 38 HOH HOH . D 4 HOH A 126 726 41 HOH HOH . D 4 HOH A 127 727 43 HOH HOH . D 4 HOH A 128 728 49 HOH HOH . D 4 HOH A 129 729 58 HOH HOH . D 4 HOH A 130 730 61 HOH HOH . D 4 HOH A 131 731 65 HOH HOH . D 4 HOH A 132 732 66 HOH HOH . D 4 HOH A 133 733 72 HOH HOH . D 4 HOH A 134 734 74 HOH HOH . D 4 HOH A 135 735 75 HOH HOH . D 4 HOH A 136 736 76 HOH HOH . D 4 HOH A 137 737 77 HOH HOH . D 4 HOH A 138 738 86 HOH HOH . D 4 HOH A 139 739 87 HOH HOH . D 4 HOH A 140 740 88 HOH HOH . D 4 HOH A 141 741 92 HOH HOH . D 4 HOH A 142 742 94 HOH HOH . D 4 HOH A 143 743 97 HOH HOH . D 4 HOH A 144 744 98 HOH HOH . D 4 HOH A 145 745 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 DCR . . . C 3 7.074 -22.772 16.354 1 13.72 ? O1 DCR 502 A 1 HETATM 2 C C1 DCR . . . C 3 7.031 -22.49 15.119 1 14.72 ? C1 DCR 502 A 1 HETATM 3 O O2 DCR . . . C 3 7.384 -21.397 14.628 1 12.71 ? O2 DCR 502 A 1 HETATM 4 C C2 DCR . . . C 3 6.499 -23.488 14.124 1 14.66 ? C2 DCR 502 A 1 HETATM 5 C C3 DCR . . . C 3 7.588 -24.467 13.799 1 14.81 ? C3 DCR 502 A 1 HETATM 6 C C4 DCR . . . C 3 7.805 -25.417 14.961 1 14.75 ? C4 DCR 502 A 1 HETATM 7 C C5 DCR . . . C 3 9.263 -25.48 15.315 1 15.78 ? C5 DCR 502 A 1 HETATM 8 C C6 DCR . . . C 3 9.907 -26.803 14.923 1 16.03 ? C6 DCR 502 A 1 HETATM 9 C C7 DCR . . . C 3 10.556 -27.435 16.141 1 16.11 ? C7 DCR 502 A 1 HETATM 10 C C8 DCR . . . C 3 11.986 -27.865 15.91 1 17.7 ? C8 DCR 502 A 1 HETATM 11 C C9 DCR . . . C 3 12.567 -28.397 17.23 1 19.09 ? C9 DCR 502 A 1 HETATM 12 C C10 DCR . . . C 3 13.86 -29.181 16.997 1 21.22 ? C10 DCR 502 A 1 HETATM 13 C C11 DCR . . . C 3 14.412 -29.711 18.324 1 23.37 ? C11 DCR 502 A 1 HETATM 14 C C12 DCR . . . C 3 15.915 -29.54 18.454 1 25.13 ? C12 DCR 502 A 1 HETATM 15 C C13 DCR . . . C 3 16.467 -30.43 19.562 1 26.77 ? C13 DCR 502 A 1 HETATM 16 C C14 DCR . . . C 3 17.488 -31.398 19.005 1 28.1 ? C14 DCR 502 A 1 HETATM 17 C C15 DCR . . . C 3 17.746 -32.549 19.961 1 29.82 ? C15 DCR 502 A 1 HETATM 18 C C16 DCR . . . C 3 18.903 -33.428 19.496 1 29.29 ? C16 DCR 502 A 1 HETATM 19 C C17 DCR . . . C 3 18.736 -34.746 19.506 1 31.26 ? C17 DCR 502 A 1 HETATM 20 C C18 DCR . . . C 3 19.825 -35.704 19.082 1 32.04 ? C18 DCR 502 A 1 HETATM 21 C C19 DCR . . . C 3 19.418 -36.49 17.908 1 31.14 ? C19 DCR 502 A 1 HETATM 22 C C20 DCR . . . C 3 19.137 -37.213 16.897 1 31.99 ? C20 DCR 502 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #