data_4L43 # _model_server_result.job_id Pd79p8hBtOGJuS2ZZtLvkw _model_server_result.datetime_utc '2024-10-19 03:36:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4l43 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4L43 # _exptl.entry_id 4L43 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 390.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-{[4-(5-ethylpyrimidin-4-yl)piperazin-1-yl]methyl}-5-(trifluoromethyl)-1H-benzimidazole _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4L43 _cell.length_a 79.572 _cell.length_b 79.572 _cell.length_c 112.749 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4L43 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H21 F3 N6' _chem_comp.formula_weight 390.405 _chem_comp.id 5FI _chem_comp.mon_nstd_flag . _chem_comp.name 2-{[4-(5-ethylpyrimidin-4-yl)piperazin-1-yl]methyl}-5-(trifluoromethyl)-1H-benzimidazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FAB CBB 5FI sing 1 n n FAD CBB 5FI sing 2 n n CBB FAC 5FI sing 3 n n CBB CAU 5FI sing 4 n n CAU CAI 5FI doub 5 n y CAU CAE 5FI sing 6 n y CAI CAX 5FI sing 7 n y CAE CAF 5FI doub 8 n y CAX NAR 5FI sing 9 n y CAX CAY 5FI doub 10 n y NAR CAV 5FI doub 11 n y CAA CAJ 5FI sing 12 n n CAJ C5 5FI sing 13 n n CAF CAY 5FI sing 14 n y CAY NAS 5FI sing 15 n y CAV NAS 5FI sing 16 n y CAV CAO 5FI sing 17 n n CAM CAK 5FI sing 18 n n CAM NBA 5FI sing 19 n n C5 C6 5FI doub 20 n y C5 C4 5FI sing 21 n y CAO NAZ 5FI sing 22 n n CAK NAZ 5FI sing 23 n n C6 N1 5FI sing 24 n y NAZ CAL 5FI sing 25 n n NBA C4 5FI sing 26 n n NBA CAN 5FI sing 27 n n C4 N3 5FI doub 28 n y N1 C2 5FI doub 29 n y CAN CAL 5FI sing 30 n n N3 C2 5FI sing 31 n y C6 H1 5FI sing 32 n n CAE H2 5FI sing 33 n n CAF H3 5FI sing 34 n n CAI H4 5FI sing 35 n n CAO H7 5FI sing 36 n n CAO H8 5FI sing 37 n n CAL H10 5FI sing 38 n n CAL H11 5FI sing 39 n n CAN H12 5FI sing 40 n n CAN H13 5FI sing 41 n n CAK H14 5FI sing 42 n n CAK H15 5FI sing 43 n n CAM H16 5FI sing 44 n n CAM H17 5FI sing 45 n n CAJ H18 5FI sing 46 n n CAJ H19 5FI sing 47 n n CAA H20 5FI sing 48 n n CAA H21 5FI sing 49 n n CAA H22 5FI sing 50 n n C2 H23 5FI sing 51 n n NAS H5 5FI sing 52 n n # _atom_sites.entry_id 4L43 _atom_sites.fract_transf_matrix[1][1] 0.012567 _atom_sites.fract_transf_matrix[1][2] 0.007256 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014511 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008869 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id 5FI _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id 5FI _pdbx_nonpoly_scheme.auth_mon_id DRG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 5FI . . . B 2 -41.962 32.776 -6.197 1 62.58 ? C4 5FI 401 A 1 HETATM 2 C C5 5FI . . . B 2 -42.837 32.828 -7.29 1 60.67 ? C5 5FI 401 A 1 HETATM 3 C C6 5FI . . . B 2 -44.169 33.143 -7.027 1 60.2 ? C6 5FI 401 A 1 HETATM 4 N N1 5FI . . . B 2 -44.586 33.382 -5.794 1 60.21 ? N1 5FI 401 A 1 HETATM 5 N N3 5FI . . . B 2 -42.465 33.026 -4.972 1 61.7 ? N3 5FI 401 A 1 HETATM 6 F FAB 5FI . . . B 2 -34.372 37.382 -12.324 1 82.13 ? FAB 5FI 401 A 1 HETATM 7 C CBB 5FI . . . B 2 -33.804 36.196 -12.134 1 82.3 ? CBB 5FI 401 A 1 HETATM 8 F FAC 5FI . . . B 2 -32.482 36.354 -12.113 1 82.71 ? FAC 5FI 401 A 1 HETATM 9 F FAD 5FI . . . B 2 -34.152 35.37 -13.118 1 82.18 ? FAD 5FI 401 A 1 HETATM 10 C CAU 5FI . . . B 2 -34.261 35.618 -10.793 1 81.65 ? CAU 5FI 401 A 1 HETATM 11 C CAE 5FI . . . B 2 -34.199 36.427 -9.663 1 81.29 ? CAE 5FI 401 A 1 HETATM 12 C CAF 5FI . . . B 2 -34.604 35.932 -8.431 1 80.56 ? CAF 5FI 401 A 1 HETATM 13 C CAI 5FI . . . B 2 -34.734 34.306 -10.695 1 80.92 ? CAI 5FI 401 A 1 HETATM 14 C CAX 5FI . . . B 2 -35.143 33.814 -9.457 1 79.92 ? CAX 5FI 401 A 1 HETATM 15 C CAY 5FI . . . B 2 -35.075 34.628 -8.337 1 79.87 ? CAY 5FI 401 A 1 HETATM 16 N NAS 5FI . . . B 2 -35.514 33.917 -7.311 1 78.93 ? NAS 5FI 401 A 1 HETATM 17 N NAR 5FI . . . B 2 -35.624 32.64 -9.057 1 78.84 ? NAR 5FI 401 A 1 HETATM 18 C CAV 5FI . . . B 2 -35.853 32.703 -7.743 1 77.8 ? CAV 5FI 401 A 1 HETATM 19 C CAO 5FI . . . B 2 -36.417 31.572 -6.854 1 75.27 ? CAO 5FI 401 A 1 HETATM 20 N NAZ 5FI . . . B 2 -37.852 31.766 -6.504 1 72.12 ? NAZ 5FI 401 A 1 HETATM 21 C CAL 5FI . . . B 2 -38.173 33.119 -5.993 1 70.22 ? CAL 5FI 401 A 1 HETATM 22 C CAN 5FI . . . B 2 -39.606 33.196 -5.454 1 67.61 ? CAN 5FI 401 A 1 HETATM 23 C CAK 5FI . . . B 2 -38.725 31.413 -7.635 1 70.24 ? CAK 5FI 401 A 1 HETATM 24 C CAM 5FI . . . B 2 -40.156 31.273 -7.12 1 67.78 ? CAM 5FI 401 A 1 HETATM 25 N NBA 5FI . . . B 2 -40.582 32.451 -6.3 1 65.68 ? NBA 5FI 401 A 1 HETATM 26 C CAJ 5FI . . . B 2 -42.481 32.574 -8.756 1 59.62 ? CAJ 5FI 401 A 1 HETATM 27 C CAA 5FI . . . B 2 -41.877 33.825 -9.382 1 59.13 ? CAA 5FI 401 A 1 HETATM 28 C C2 5FI . . . B 2 -43.743 33.321 -4.778 1 60.8 ? C2 5FI 401 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #