data_4L45 # _model_server_result.job_id SjKlevYYX06UMIfx85BcwA _model_server_result.datetime_utc '2024-10-19 04:00:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4l45 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4L45 # _exptl.entry_id 4L45 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 390.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-{[4-(5-ethylpyrimidin-4-yl)piperazin-1-yl]methyl}-5-(trifluoromethyl)-1H-benzimidazole _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4L45 _cell.length_a 81.191 _cell.length_b 81.191 _cell.length_c 110.744 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4L45 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H21 F3 N6' _chem_comp.formula_weight 390.405 _chem_comp.id 5FI _chem_comp.mon_nstd_flag . _chem_comp.name 2-{[4-(5-ethylpyrimidin-4-yl)piperazin-1-yl]methyl}-5-(trifluoromethyl)-1H-benzimidazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FAB CBB 5FI sing 1 n n FAD CBB 5FI sing 2 n n CBB FAC 5FI sing 3 n n CBB CAU 5FI sing 4 n n CAU CAI 5FI doub 5 n y CAU CAE 5FI sing 6 n y CAI CAX 5FI sing 7 n y CAE CAF 5FI doub 8 n y CAX NAR 5FI sing 9 n y CAX CAY 5FI doub 10 n y NAR CAV 5FI doub 11 n y CAA CAJ 5FI sing 12 n n CAJ C5 5FI sing 13 n n CAF CAY 5FI sing 14 n y CAY NAS 5FI sing 15 n y CAV NAS 5FI sing 16 n y CAV CAO 5FI sing 17 n n CAM CAK 5FI sing 18 n n CAM NBA 5FI sing 19 n n C5 C6 5FI doub 20 n y C5 C4 5FI sing 21 n y CAO NAZ 5FI sing 22 n n CAK NAZ 5FI sing 23 n n C6 N1 5FI sing 24 n y NAZ CAL 5FI sing 25 n n NBA C4 5FI sing 26 n n NBA CAN 5FI sing 27 n n C4 N3 5FI doub 28 n y N1 C2 5FI doub 29 n y CAN CAL 5FI sing 30 n n N3 C2 5FI sing 31 n y C6 H1 5FI sing 32 n n CAE H2 5FI sing 33 n n CAF H3 5FI sing 34 n n CAI H4 5FI sing 35 n n CAO H7 5FI sing 36 n n CAO H8 5FI sing 37 n n CAL H10 5FI sing 38 n n CAL H11 5FI sing 39 n n CAN H12 5FI sing 40 n n CAN H13 5FI sing 41 n n CAK H14 5FI sing 42 n n CAK H15 5FI sing 43 n n CAM H16 5FI sing 44 n n CAM H17 5FI sing 45 n n CAJ H18 5FI sing 46 n n CAJ H19 5FI sing 47 n n CAA H20 5FI sing 48 n n CAA H21 5FI sing 49 n n CAA H22 5FI sing 50 n n C2 H23 5FI sing 51 n n NAS H5 5FI sing 52 n n # _atom_sites.entry_id 4L45 _atom_sites.fract_transf_matrix[1][1] 0.012317 _atom_sites.fract_transf_matrix[1][2] 0.007111 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014222 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00903 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id 5FI _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id 5FI _pdbx_nonpoly_scheme.auth_mon_id DRG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 5FI . . . B 2 38.557 -32.951 -12.894 1 78.64 ? C4 5FI 401 A 1 HETATM 2 C C5 5FI . . . B 2 37.713 -32.738 -11.792 1 77.79 ? C5 5FI 401 A 1 HETATM 3 C C6 5FI . . . B 2 36.342 -32.78 -12.026 1 78.11 ? C6 5FI 401 A 1 HETATM 4 N N1 5FI . . . B 2 35.872 -33.019 -13.239 1 79.45 ? N1 5FI 401 A 1 HETATM 5 N N3 5FI . . . B 2 38.002 -33.18 -14.1 1 79.44 ? N3 5FI 401 A 1 HETATM 6 F FAB 5FI . . . B 2 46.167 -38.283 -6.504 1 104.72 ? FAB 5FI 401 A 1 HETATM 7 C CBB 5FI . . . B 2 46.516 -37.006 -6.601 1 106.36 ? CBB 5FI 401 A 1 HETATM 8 F FAC 5FI . . . B 2 47.821 -36.894 -6.376 1 109.79 ? FAC 5FI 401 A 1 HETATM 9 F FAD 5FI . . . B 2 45.842 -36.29 -5.702 1 104.61 ? FAD 5FI 401 A 1 HETATM 10 C CAU 5FI . . . B 2 46.201 -36.515 -8.014 1 100.33 ? CAU 5FI 401 A 1 HETATM 11 C CAE 5FI . . . B 2 46.518 -37.327 -9.102 1 99.24 ? CAE 5FI 401 A 1 HETATM 12 C CAF 5FI . . . B 2 46.241 -36.903 -10.398 1 96.82 ? CAF 5FI 401 A 1 HETATM 13 C CAI 5FI . . . B 2 45.604 -35.27 -8.217 1 93.69 ? CAI 5FI 401 A 1 HETATM 14 C CAX 5FI . . . B 2 45.328 -34.847 -9.515 1 91.4 ? CAX 5FI 401 A 1 HETATM 15 C CAY 5FI . . . B 2 45.646 -35.661 -10.596 1 92.41 ? CAY 5FI 401 A 1 HETATM 16 N NAS 5FI . . . B 2 45.278 -35.017 -11.695 1 92.19 ? NAS 5FI 401 A 1 HETATM 17 N NAR 5FI . . . B 2 44.78 -33.742 -10.006 1 89.07 ? NAR 5FI 401 A 1 HETATM 18 C CAV 5FI . . . B 2 44.762 -33.846 -11.335 1 88.72 ? CAV 5FI 401 A 1 HETATM 19 C CAO 5FI . . . B 2 44.194 -32.816 -12.301 1 87.23 ? CAO 5FI 401 A 1 HETATM 20 N NAZ 5FI . . . B 2 42.761 -33.138 -12.374 1 84.59 ? NAZ 5FI 401 A 1 HETATM 21 C CAL 5FI . . . B 2 42.21 -33.294 -13.733 1 80.7 ? CAL 5FI 401 A 1 HETATM 22 C CAN 5FI . . . B 2 40.793 -33.866 -13.61 1 80.52 ? CAN 5FI 401 A 1 HETATM 23 C CAK 5FI . . . B 2 41.962 -32.364 -11.4 1 84.19 ? CAK 5FI 401 A 1 HETATM 24 C CAM 5FI . . . B 2 40.649 -31.862 -12.005 1 82.54 ? CAM 5FI 401 A 1 HETATM 25 N NBA 5FI . . . B 2 39.969 -32.921 -12.806 1 81.44 ? NBA 5FI 401 A 1 HETATM 26 C CAJ 5FI . . . B 2 38.142 -32.457 -10.344 1 80.01 ? CAJ 5FI 401 A 1 HETATM 27 C CAA 5FI . . . B 2 38.521 -33.746 -9.612 1 80.15 ? CAA 5FI 401 A 1 HETATM 28 C C2 5FI . . . B 2 36.689 -33.214 -14.262 1 80.02 ? C2 5FI 401 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #