data_4L4M # _model_server_result.job_id u7wqa0vs9SDKpgMRBquINA _model_server_result.datetime_utc '2024-11-28 12:50:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4l4m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":604}' # _entry.id 4L4M # _exptl.entry_id 4L4M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.47 _cell.angle_gamma 90 _cell.entry_id 4L4M _cell.length_a 60.579 _cell.length_b 107.056 _cell.length_c 82.998 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4L4M _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 J N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 131 n n C1 C2 EDO sing 132 n n C1 H11 EDO sing 133 n n C1 H12 EDO sing 134 n n O1 HO1 EDO sing 135 n n C2 O2 EDO sing 136 n n C2 H21 EDO sing 137 n n C2 H22 EDO sing 138 n n O2 HO2 EDO sing 139 n n # _atom_sites.entry_id 4L4M _atom_sites.fract_transf_matrix[1][1] 0.016507 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001873 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009341 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012126 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 1XD A 1 601 1 1XD LIG . D 3 PO4 A 1 602 1 PO4 PO4 . E 3 PO4 A 1 603 6 PO4 PO4 . F 4 EDO A 1 604 8 EDO EDO . G 2 1XD B 1 601 1 1XD LIG . H 3 PO4 B 1 602 1 PO4 PO4 . I 3 PO4 B 1 603 5 PO4 PO4 . J 4 EDO B 1 604 7 EDO EDO . K 5 HOH A 1 701 1 HOH HOH . K 5 HOH A 2 702 5 HOH HOH . K 5 HOH A 3 703 9 HOH HOH . K 5 HOH A 4 704 10 HOH HOH . K 5 HOH A 5 705 12 HOH HOH . K 5 HOH A 6 706 13 HOH HOH . K 5 HOH A 7 707 17 HOH HOH . K 5 HOH A 8 708 19 HOH HOH . K 5 HOH A 9 709 20 HOH HOH . K 5 HOH A 10 710 23 HOH HOH . K 5 HOH A 11 711 24 HOH HOH . K 5 HOH A 12 712 26 HOH HOH . K 5 HOH A 13 713 27 HOH HOH . K 5 HOH A 14 714 29 HOH HOH . K 5 HOH A 15 715 30 HOH HOH . K 5 HOH A 16 716 37 HOH HOH . K 5 HOH A 17 717 38 HOH HOH . K 5 HOH A 18 718 41 HOH HOH . K 5 HOH A 19 719 42 HOH HOH . K 5 HOH A 20 720 44 HOH HOH . K 5 HOH A 21 721 45 HOH HOH . K 5 HOH A 22 722 47 HOH HOH . K 5 HOH A 23 723 48 HOH HOH . K 5 HOH A 24 724 49 HOH HOH . K 5 HOH A 25 725 50 HOH HOH . K 5 HOH A 26 726 51 HOH HOH . K 5 HOH A 27 727 54 HOH HOH . K 5 HOH A 28 728 55 HOH HOH . K 5 HOH A 29 729 58 HOH HOH . K 5 HOH A 30 730 59 HOH HOH . K 5 HOH A 31 731 64 HOH HOH . K 5 HOH A 32 732 65 HOH HOH . K 5 HOH A 33 733 67 HOH HOH . K 5 HOH A 34 734 70 HOH HOH . K 5 HOH A 35 735 71 HOH HOH . K 5 HOH A 36 736 72 HOH HOH . K 5 HOH A 37 737 73 HOH HOH . K 5 HOH A 38 738 76 HOH HOH . K 5 HOH A 39 739 77 HOH HOH . K 5 HOH A 40 740 79 HOH HOH . K 5 HOH A 41 741 84 HOH HOH . K 5 HOH A 42 742 86 HOH HOH . K 5 HOH A 43 743 88 HOH HOH . K 5 HOH A 44 744 89 HOH HOH . K 5 HOH A 45 745 90 HOH HOH . K 5 HOH A 46 746 91 HOH HOH . K 5 HOH A 47 747 95 HOH HOH . K 5 HOH A 48 748 99 HOH HOH . K 5 HOH A 49 749 100 HOH HOH . K 5 HOH A 50 750 103 HOH HOH . K 5 HOH A 51 751 104 HOH HOH . K 5 HOH A 52 752 105 HOH HOH . K 5 HOH A 53 753 106 HOH HOH . K 5 HOH A 54 754 108 HOH HOH . K 5 HOH A 55 755 109 HOH HOH . K 5 HOH A 56 756 110 HOH HOH . K 5 HOH A 57 757 112 HOH HOH . K 5 HOH A 58 758 113 HOH HOH . K 5 HOH A 59 759 114 HOH HOH . K 5 HOH A 60 760 117 HOH HOH . K 5 HOH A 61 761 119 HOH HOH . K 5 HOH A 62 762 120 HOH HOH . K 5 HOH A 63 763 122 HOH HOH . K 5 HOH A 64 764 123 HOH HOH . K 5 HOH A 65 765 124 HOH HOH . K 5 HOH A 66 766 126 HOH HOH . K 5 HOH A 67 767 128 HOH HOH . K 5 HOH A 68 768 131 HOH HOH . K 5 HOH A 69 769 132 HOH HOH . K 5 HOH A 70 770 135 HOH HOH . K 5 HOH A 71 771 136 HOH HOH . K 5 HOH A 72 772 138 HOH HOH . K 5 HOH A 73 773 139 HOH HOH . K 5 HOH A 74 774 140 HOH HOH . K 5 HOH A 75 775 141 HOH HOH . K 5 HOH A 76 776 144 HOH HOH . K 5 HOH A 77 777 145 HOH HOH . K 5 HOH A 78 778 147 HOH HOH . K 5 HOH A 79 779 150 HOH HOH . K 5 HOH A 80 780 152 HOH HOH . K 5 HOH A 81 781 154 HOH HOH . K 5 HOH A 82 782 155 HOH HOH . K 5 HOH A 83 783 157 HOH HOH . K 5 HOH A 84 784 160 HOH HOH . K 5 HOH A 85 785 162 HOH HOH . K 5 HOH A 86 786 164 HOH HOH . K 5 HOH A 87 787 165 HOH HOH . K 5 HOH A 88 788 167 HOH HOH . K 5 HOH A 89 789 170 HOH HOH . K 5 HOH A 90 790 171 HOH HOH . K 5 HOH A 91 791 172 HOH HOH . K 5 HOH A 92 792 173 HOH HOH . K 5 HOH A 93 793 175 HOH HOH . K 5 HOH A 94 794 180 HOH HOH . K 5 HOH A 95 795 182 HOH HOH . K 5 HOH A 96 796 185 HOH HOH . K 5 HOH A 97 797 187 HOH HOH . K 5 HOH A 98 798 189 HOH HOH . K 5 HOH A 99 799 190 HOH HOH . K 5 HOH A 100 800 191 HOH HOH . K 5 HOH A 101 801 193 HOH HOH . K 5 HOH A 102 802 194 HOH HOH . K 5 HOH A 103 803 195 HOH HOH . K 5 HOH A 104 804 196 HOH HOH . K 5 HOH A 105 805 197 HOH HOH . K 5 HOH A 106 806 200 HOH HOH . K 5 HOH A 107 807 205 HOH HOH . K 5 HOH A 108 808 206 HOH HOH . K 5 HOH A 109 809 207 HOH HOH . K 5 HOH A 110 810 211 HOH HOH . K 5 HOH A 111 811 212 HOH HOH . K 5 HOH A 112 812 217 HOH HOH . K 5 HOH A 113 813 218 HOH HOH . K 5 HOH A 114 814 220 HOH HOH . K 5 HOH A 115 815 221 HOH HOH . K 5 HOH A 116 816 222 HOH HOH . K 5 HOH A 117 817 223 HOH HOH . K 5 HOH A 118 818 224 HOH HOH . K 5 HOH A 119 819 227 HOH HOH . K 5 HOH A 120 820 228 HOH HOH . K 5 HOH A 121 821 233 HOH HOH . K 5 HOH A 122 822 234 HOH HOH . K 5 HOH A 123 823 235 HOH HOH . K 5 HOH A 124 824 237 HOH HOH . K 5 HOH A 125 825 240 HOH HOH . K 5 HOH A 126 826 241 HOH HOH . K 5 HOH A 127 827 242 HOH HOH . K 5 HOH A 128 828 245 HOH HOH . K 5 HOH A 129 829 247 HOH HOH . K 5 HOH A 130 830 248 HOH HOH . K 5 HOH A 131 831 250 HOH HOH . K 5 HOH A 132 832 251 HOH HOH . K 5 HOH A 133 833 254 HOH HOH . K 5 HOH A 134 834 255 HOH HOH . K 5 HOH A 135 835 256 HOH HOH . K 5 HOH A 136 836 258 HOH HOH . K 5 HOH A 137 837 261 HOH HOH . K 5 HOH A 138 838 262 HOH HOH . K 5 HOH A 139 839 264 HOH HOH . L 5 HOH B 1 701 2 HOH HOH . L 5 HOH B 2 702 3 HOH HOH . L 5 HOH B 3 703 4 HOH HOH . L 5 HOH B 4 704 6 HOH HOH . L 5 HOH B 5 705 7 HOH HOH . L 5 HOH B 6 706 8 HOH HOH . L 5 HOH B 7 707 11 HOH HOH . L 5 HOH B 8 708 14 HOH HOH . L 5 HOH B 9 709 15 HOH HOH . L 5 HOH B 10 710 16 HOH HOH . L 5 HOH B 11 711 18 HOH HOH . L 5 HOH B 12 712 21 HOH HOH . L 5 HOH B 13 713 22 HOH HOH . L 5 HOH B 14 714 25 HOH HOH . L 5 HOH B 15 715 28 HOH HOH . L 5 HOH B 16 716 31 HOH HOH . L 5 HOH B 17 717 32 HOH HOH . L 5 HOH B 18 718 33 HOH HOH . L 5 HOH B 19 719 34 HOH HOH . L 5 HOH B 20 720 35 HOH HOH . L 5 HOH B 21 721 36 HOH HOH . L 5 HOH B 22 722 39 HOH HOH . L 5 HOH B 23 723 40 HOH HOH . L 5 HOH B 24 724 43 HOH HOH . L 5 HOH B 25 725 46 HOH HOH . L 5 HOH B 26 726 52 HOH HOH . L 5 HOH B 27 727 53 HOH HOH . L 5 HOH B 28 728 56 HOH HOH . L 5 HOH B 29 729 57 HOH HOH . L 5 HOH B 30 730 60 HOH HOH . L 5 HOH B 31 731 61 HOH HOH . L 5 HOH B 32 732 62 HOH HOH . L 5 HOH B 33 733 66 HOH HOH . L 5 HOH B 34 734 68 HOH HOH . L 5 HOH B 35 735 69 HOH HOH . L 5 HOH B 36 736 74 HOH HOH . L 5 HOH B 37 737 75 HOH HOH . L 5 HOH B 38 738 78 HOH HOH . L 5 HOH B 39 739 80 HOH HOH . L 5 HOH B 40 740 81 HOH HOH . L 5 HOH B 41 741 82 HOH HOH . L 5 HOH B 42 742 83 HOH HOH . L 5 HOH B 43 743 85 HOH HOH . L 5 HOH B 44 744 87 HOH HOH . L 5 HOH B 45 745 92 HOH HOH . L 5 HOH B 46 746 93 HOH HOH . L 5 HOH B 47 747 94 HOH HOH . L 5 HOH B 48 748 96 HOH HOH . L 5 HOH B 49 749 97 HOH HOH . L 5 HOH B 50 750 98 HOH HOH . L 5 HOH B 51 751 101 HOH HOH . L 5 HOH B 52 752 102 HOH HOH . L 5 HOH B 53 753 107 HOH HOH . L 5 HOH B 54 754 111 HOH HOH . L 5 HOH B 55 755 115 HOH HOH . L 5 HOH B 56 756 116 HOH HOH . L 5 HOH B 57 757 118 HOH HOH . L 5 HOH B 58 758 121 HOH HOH . L 5 HOH B 59 759 125 HOH HOH . L 5 HOH B 60 760 127 HOH HOH . L 5 HOH B 61 761 133 HOH HOH . L 5 HOH B 62 762 134 HOH HOH . L 5 HOH B 63 763 137 HOH HOH . L 5 HOH B 64 764 142 HOH HOH . L 5 HOH B 65 765 143 HOH HOH . L 5 HOH B 66 766 146 HOH HOH . L 5 HOH B 67 767 148 HOH HOH . L 5 HOH B 68 768 149 HOH HOH . L 5 HOH B 69 769 151 HOH HOH . L 5 HOH B 70 770 153 HOH HOH . L 5 HOH B 71 771 156 HOH HOH . L 5 HOH B 72 772 158 HOH HOH . L 5 HOH B 73 773 159 HOH HOH . L 5 HOH B 74 774 161 HOH HOH . L 5 HOH B 75 775 163 HOH HOH . L 5 HOH B 76 776 166 HOH HOH . L 5 HOH B 77 777 168 HOH HOH . L 5 HOH B 78 778 169 HOH HOH . L 5 HOH B 79 779 176 HOH HOH . L 5 HOH B 80 780 177 HOH HOH . L 5 HOH B 81 781 178 HOH HOH . L 5 HOH B 82 782 179 HOH HOH . L 5 HOH B 83 783 181 HOH HOH . L 5 HOH B 84 784 183 HOH HOH . L 5 HOH B 85 785 184 HOH HOH . L 5 HOH B 86 786 186 HOH HOH . L 5 HOH B 87 787 188 HOH HOH . L 5 HOH B 88 788 192 HOH HOH . L 5 HOH B 89 789 198 HOH HOH . L 5 HOH B 90 790 199 HOH HOH . L 5 HOH B 91 791 201 HOH HOH . L 5 HOH B 92 792 202 HOH HOH . L 5 HOH B 93 793 203 HOH HOH . L 5 HOH B 94 794 204 HOH HOH . L 5 HOH B 95 795 208 HOH HOH . L 5 HOH B 96 796 209 HOH HOH . L 5 HOH B 97 797 210 HOH HOH . L 5 HOH B 98 798 213 HOH HOH . L 5 HOH B 99 799 214 HOH HOH . L 5 HOH B 100 800 215 HOH HOH . L 5 HOH B 101 801 216 HOH HOH . L 5 HOH B 102 802 219 HOH HOH . L 5 HOH B 103 803 225 HOH HOH . L 5 HOH B 104 804 226 HOH HOH . L 5 HOH B 105 805 229 HOH HOH . L 5 HOH B 106 806 230 HOH HOH . L 5 HOH B 107 807 231 HOH HOH . L 5 HOH B 108 808 232 HOH HOH . L 5 HOH B 109 809 236 HOH HOH . L 5 HOH B 110 810 238 HOH HOH . L 5 HOH B 111 811 239 HOH HOH . L 5 HOH B 112 812 243 HOH HOH . L 5 HOH B 113 813 244 HOH HOH . L 5 HOH B 114 814 246 HOH HOH . L 5 HOH B 115 815 249 HOH HOH . L 5 HOH B 116 816 252 HOH HOH . L 5 HOH B 117 817 253 HOH HOH . L 5 HOH B 118 818 257 HOH HOH . L 5 HOH B 119 819 259 HOH HOH . L 5 HOH B 120 820 260 HOH HOH . L 5 HOH B 121 821 263 HOH HOH . L 5 HOH B 122 822 265 HOH HOH . L 5 HOH B 123 823 266 HOH HOH . L 5 HOH B 124 824 267 HOH HOH . L 5 HOH B 125 825 268 HOH HOH . L 5 HOH B 126 826 269 HOH HOH . L 5 HOH B 127 827 270 HOH HOH . L 5 HOH B 128 828 271 HOH HOH . L 5 HOH B 129 829 272 HOH HOH . L 5 HOH B 130 830 273 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . J 4 13.114 22.839 8.864 1 17.73 ? C1 EDO 604 B 1 HETATM 2 O O1 EDO . . . J 4 14.145 22.654 9.841 1 18.17 ? O1 EDO 604 B 1 HETATM 3 C C2 EDO . . . J 4 12.122 23.896 9.328 1 16.97 ? C2 EDO 604 B 1 HETATM 4 O O2 EDO . . . J 4 12.775 25.167 9.389 1 15.45 ? O2 EDO 604 B 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 50 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #