data_4L4S
#
_model_server_result.job_id            qPZ-fkP-vTmbLRJV7MU5Jg 
_model_server_result.datetime_utc      '2025-07-03 08:33:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4l4s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    4L4S 
#
_exptl.entry_id    4L4S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              665.441 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4L4S 
_cell.length_a            84.317 
_cell.length_b            84.317 
_cell.length_c            276.691 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4L4S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        91 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 84.317 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C21 H29 N7 O14 P2' 
_chem_comp.formula_weight    665.441 
_chem_comp.id                NAI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     NADH 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAI doub 237 n n 
PA O2A NAI sing 238 n n 
PA O5B NAI sing 239 n n 
PA O3 NAI sing 240 n n 
O2A HOA2 NAI sing 241 n n 
O5B C5B NAI sing 242 n n 
C5B C4B NAI sing 243 n n 
C5B H51A NAI sing 244 n n 
C5B H52A NAI sing 245 n n 
C4B O4B NAI sing 246 n n 
C4B C3B NAI sing 247 n n 
C4B H4B NAI sing 248 n n 
O4B C1B NAI sing 249 n n 
C3B O3B NAI sing 250 n n 
C3B C2B NAI sing 251 n n 
C3B H3B NAI sing 252 n n 
O3B HO3A NAI sing 253 n n 
C2B O2B NAI sing 254 n n 
C2B C1B NAI sing 255 n n 
C2B H2B NAI sing 256 n n 
O2B HO2A NAI sing 257 n n 
C1B N9A NAI sing 258 n n 
C1B H1B NAI sing 259 n n 
N9A C8A NAI sing 260 n y 
N9A C4A NAI sing 261 n y 
C8A N7A NAI doub 262 n y 
C8A H8A NAI sing 263 n n 
N7A C5A NAI sing 264 n y 
C5A C6A NAI sing 265 n y 
C5A C4A NAI doub 266 n y 
C6A N6A NAI sing 267 n n 
C6A N1A NAI doub 268 n y 
N6A H61A NAI sing 269 n n 
N6A H62A NAI sing 270 n n 
N1A C2A NAI sing 271 n y 
C2A N3A NAI doub 272 n y 
C2A H2A NAI sing 273 n n 
N3A C4A NAI sing 274 n y 
O3 PN NAI sing 275 n n 
PN O1N NAI sing 276 n n 
PN O2N NAI doub 277 n n 
PN O5D NAI sing 278 n n 
O1N HO1N NAI sing 279 n n 
O5D C5D NAI sing 280 n n 
C5D C4D NAI sing 281 n n 
C5D H51N NAI sing 282 n n 
C5D H52N NAI sing 283 n n 
C4D O4D NAI sing 284 n n 
C4D C3D NAI sing 285 n n 
C4D H4D NAI sing 286 n n 
O4D C1D NAI sing 287 n n 
C3D O3D NAI sing 288 n n 
C3D C2D NAI sing 289 n n 
C3D H3D NAI sing 290 n n 
O3D HO3N NAI sing 291 n n 
C2D O2D NAI sing 292 n n 
C2D C1D NAI sing 293 n n 
C2D H2D NAI sing 294 n n 
O2D HO2N NAI sing 295 n n 
C1D N1N NAI sing 296 n n 
C1D H1D NAI sing 297 n n 
N1N C2N NAI sing 298 n n 
N1N C6N NAI sing 299 n n 
C2N C3N NAI doub 300 n n 
C2N H2N NAI sing 301 n n 
C3N C7N NAI sing 302 n n 
C3N C4N NAI sing 303 n n 
C7N O7N NAI doub 304 n n 
C7N N7N NAI sing 305 n n 
N7N H71N NAI sing 306 n n 
N7N H72N NAI sing 307 n n 
C4N C5N NAI sing 308 n n 
C4N H4N NAI sing 309 n n 
C4N H42N NAI sing 310 n n 
C5N C6N NAI doub 311 n n 
C5N H5N NAI sing 312 n n 
C6N H6N NAI sing 313 n n 
#
_atom_sites.entry_id                     4L4S 
_atom_sites.fract_transf_matrix[1][1]    0.01186 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01186 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003614 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAI H 1 401 822 NAI NAI . 
D 2 NAI A 1 401 823 NAI NAI . 
E 3 HOH H 1 501 1 HOH HOH . 
E 3 HOH H 2 502 2 HOH HOH . 
E 3 HOH H 3 503 3 HOH HOH . 
E 3 HOH H 4 504 4 HOH HOH . 
E 3 HOH H 5 505 5 HOH HOH . 
E 3 HOH H 6 506 9 HOH HOH . 
E 3 HOH H 7 507 10 HOH HOH . 
E 3 HOH H 8 508 11 HOH HOH . 
E 3 HOH H 9 509 12 HOH HOH . 
E 3 HOH H 10 510 13 HOH HOH . 
E 3 HOH H 11 511 19 HOH HOH . 
E 3 HOH H 12 512 25 HOH HOH . 
E 3 HOH H 13 513 26 HOH HOH . 
E 3 HOH H 14 514 28 HOH HOH . 
E 3 HOH H 15 515 33 HOH HOH . 
E 3 HOH H 16 516 38 HOH HOH . 
E 3 HOH H 17 517 41 HOH HOH . 
E 3 HOH H 18 518 43 HOH HOH . 
E 3 HOH H 19 519 46 HOH HOH . 
E 3 HOH H 20 520 55 HOH HOH . 
E 3 HOH H 21 521 56 HOH HOH . 
F 3 HOH A 1 501 6 HOH HOH . 
F 3 HOH A 2 502 7 HOH HOH . 
F 3 HOH A 3 503 16 HOH HOH . 
F 3 HOH A 4 504 20 HOH HOH . 
F 3 HOH A 5 505 21 HOH HOH . 
F 3 HOH A 6 506 24 HOH HOH . 
F 3 HOH A 7 507 31 HOH HOH . 
F 3 HOH A 8 508 32 HOH HOH . 
F 3 HOH A 9 509 35 HOH HOH . 
F 3 HOH A 10 510 37 HOH HOH . 
F 3 HOH A 11 511 40 HOH HOH . 
F 3 HOH A 12 512 47 HOH HOH . 
F 3 HOH A 13 513 52 HOH HOH . 
F 3 HOH A 14 514 53 HOH HOH . 
F 3 HOH A 15 515 54 HOH HOH . 
F 3 HOH A 16 516 63 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAI . . . D 2 46.504 -15.567 16.224 1 59.85 ? PA NAI 401 A 1 
HETATM 2 O O1A NAI . . . D 2 47.653 -15.224 15.196 1 10.24 ? O1A NAI 401 A 1 
HETATM 3 O O2A NAI . . . D 2 45.585 -15.452 14.975 1 23.1 ? O2A NAI 401 A 1 
HETATM 4 O O5B NAI . . . D 2 46.961 -14.214 16.866 1 47.54 ? O5B NAI 401 A 1 
HETATM 5 C C5B NAI . . . D 2 47.912 -14.106 17.879 1 25.93 ? C5B NAI 401 A 1 
HETATM 6 C C4B NAI . . . D 2 47.649 -12.781 18.542 1 20.86 ? C4B NAI 401 A 1 
HETATM 7 O O4B NAI . . . D 2 48.815 -12.357 19.185 1 38.31 ? O4B NAI 401 A 1 
HETATM 8 C C3B NAI . . . D 2 47.196 -11.675 17.602 1 15.05 ? C3B NAI 401 A 1 
HETATM 9 O O3B NAI . . . D 2 45.933 -11.234 17.908 1 38.02 ? O3B NAI 401 A 1 
HETATM 10 C C2B NAI . . . D 2 48.17 -10.573 17.741 1 32.04 ? C2B NAI 401 A 1 
HETATM 11 O O2B NAI . . . D 2 47.684 -9.323 17.677 1 27.18 ? O2B NAI 401 A 1 
HETATM 12 C C1B NAI . . . D 2 48.796 -10.879 19.13 1 9.85 ? C1B NAI 401 A 1 
HETATM 13 N N9A NAI . . . D 2 50.071 -10.101 19.571 1 32.93 ? N9A NAI 401 A 1 
HETATM 14 C C8A NAI . . . D 2 51.222 -9.983 18.875 1 26.48 ? C8A NAI 401 A 1 
HETATM 15 N N7A NAI . . . D 2 52.079 -9.227 19.561 1 48.43 ? N7A NAI 401 A 1 
HETATM 16 C C5A NAI . . . D 2 51.5 -8.827 20.718 1 59.34 ? C5A NAI 401 A 1 
HETATM 17 C C6A NAI . . . D 2 51.881 -8.04 21.809 1 59.16 ? C6A NAI 401 A 1 
HETATM 18 N N6A NAI . . . D 2 53.198 -7.459 21.825 1 65.25 ? N6A NAI 401 A 1 
HETATM 19 N N1A NAI . . . D 2 51.04 -7.821 22.835 1 67.41 ? N1A NAI 401 A 1 
HETATM 20 C C2A NAI . . . D 2 49.798 -8.35 22.855 1 66.45 ? C2A NAI 401 A 1 
HETATM 21 N N3A NAI . . . D 2 49.382 -9.119 21.819 1 48.9 ? N3A NAI 401 A 1 
HETATM 22 C C4A NAI . . . D 2 50.196 -9.377 20.749 1 57.46 ? C4A NAI 401 A 1 
HETATM 23 O O3 NAI . . . D 2 47.337 -16.901 16.451 1 8.34 ? O3 NAI 401 A 1 
HETATM 24 P PN NAI . . . D 2 46.76 -18.217 17.064 1 36.95 ? PN NAI 401 A 1 
HETATM 25 O O1N NAI . . . D 2 46.256 -19.172 15.927 1 34.29 ? O1N NAI 401 A 1 
HETATM 26 O O2N NAI . . . D 2 45.641 -17.762 18.051 1 46.32 ? O2N NAI 401 A 1 
HETATM 27 O O5D NAI . . . D 2 47.998 -18.82 17.795 1 27.68 ? O5D NAI 401 A 1 
HETATM 28 C C5D NAI . . . D 2 48.81 -17.907 18.494 1 29.21 ? C5D NAI 401 A 1 
HETATM 29 C C4D NAI . . . D 2 49.875 -18.759 19.167 1 35.26 ? C4D NAI 401 A 1 
HETATM 30 O O4D NAI . . . D 2 49.28 -19.922 19.752 1 18.79 ? O4D NAI 401 A 1 
HETATM 31 C C3D NAI . . . D 2 50.97 -19.177 18.238 1 26.54 ? C3D NAI 401 A 1 
HETATM 32 O O3D NAI . . . D 2 52.191 -19.006 18.875 1 47.39 ? O3D NAI 401 A 1 
HETATM 33 C C2D NAI . . . D 2 50.65 -20.604 18.027 1 34.57 ? C2D NAI 401 A 1 
HETATM 34 O O2D NAI . . . D 2 51.733 -21.37 17.655 1 46.99 ? O2D NAI 401 A 1 
HETATM 35 C C1D NAI . . . D 2 50.146 -20.969 19.381 1 35.81 ? C1D NAI 401 A 1 
HETATM 36 N N1N NAI . . . D 2 49.597 -22.329 19.569 1 34.04 ? N1N NAI 401 A 1 
HETATM 37 C C2N NAI . . . D 2 50.042 -23.279 20.553 1 40.95 ? C2N NAI 401 A 1 
HETATM 38 C C3N NAI . . . D 2 49.454 -24.527 20.745 1 31.15 ? C3N NAI 401 A 1 
HETATM 39 C C7N NAI . . . D 2 50.035 -25.428 21.813 1 37.9 ? C7N NAI 401 A 1 
HETATM 40 O O7N NAI . . . D 2 49.48 -26.485 22.113 1 50.82 ? O7N NAI 401 A 1 
HETATM 41 N N7N NAI . . . D 2 51.259 -25.077 22.496 1 38.32 ? N7N NAI 401 A 1 
HETATM 42 C C4N NAI . . . D 2 48.276 -24.951 19.888 1 22.51 ? C4N NAI 401 A 1 
HETATM 43 C C5N NAI . . . D 2 47.939 -23.945 18.787 1 30.52 ? C5N NAI 401 A 1 
HETATM 44 C C6N NAI . . . D 2 48.565 -22.711 18.667 1 15.19 ? C6N NAI 401 A 1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           555 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           44 
#