data_4L4X # _model_server_result.job_id 8xYIi56qQ8qG5d2L3M7IUw _model_server_result.datetime_utc '2024-10-13 01:17:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4l4x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 4L4X # _exptl.entry_id 4L4X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4L4X _cell.length_a 45.139 _cell.length_b 133.513 _cell.length_c 185.137 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4L4X _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 92.5685 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 237 n n PA O2A NDP sing 238 n n PA O5B NDP sing 239 n n PA O3 NDP sing 240 n n O2A HOA2 NDP sing 241 n n O5B C5B NDP sing 242 n n C5B C4B NDP sing 243 n n C5B H51A NDP sing 244 n n C5B H52A NDP sing 245 n n C4B O4B NDP sing 246 n n C4B C3B NDP sing 247 n n C4B H4B NDP sing 248 n n O4B C1B NDP sing 249 n n C3B O3B NDP sing 250 n n C3B C2B NDP sing 251 n n C3B H3B NDP sing 252 n n O3B HO3A NDP sing 253 n n C2B O2B NDP sing 254 n n C2B C1B NDP sing 255 n n C2B H2B NDP sing 256 n n O2B P2B NDP sing 257 n n C1B N9A NDP sing 258 n n C1B H1B NDP sing 259 n n N9A C8A NDP sing 260 n y N9A C4A NDP sing 261 n y C8A N7A NDP doub 262 n y C8A H8A NDP sing 263 n n N7A C5A NDP sing 264 n y C5A C6A NDP sing 265 n y C5A C4A NDP doub 266 n y C6A N6A NDP sing 267 n n C6A N1A NDP doub 268 n y N6A H61A NDP sing 269 n n N6A H62A NDP sing 270 n n N1A C2A NDP sing 271 n y C2A N3A NDP doub 272 n y C2A H2A NDP sing 273 n n N3A C4A NDP sing 274 n y O3 PN NDP sing 275 n n PN O1N NDP doub 276 n n PN O2N NDP sing 277 n n PN O5D NDP sing 278 n n O2N H21N NDP sing 279 n n O5D C5D NDP sing 280 n n C5D C4D NDP sing 281 n n C5D H51N NDP sing 282 n n C5D H52N NDP sing 283 n n C4D O4D NDP sing 284 n n C4D C3D NDP sing 285 n n C4D H4D NDP sing 286 n n O4D C1D NDP sing 287 n n C3D O3D NDP sing 288 n n C3D C2D NDP sing 289 n n C3D H3D NDP sing 290 n n O3D HO3N NDP sing 291 n n C2D O2D NDP sing 292 n n C2D C1D NDP sing 293 n n C2D H2D NDP sing 294 n n O2D HO2N NDP sing 295 n n C1D N1N NDP sing 296 n n C1D H1D NDP sing 297 n n N1N C2N NDP sing 298 n n N1N C6N NDP sing 299 n n C2N C3N NDP doub 300 n n C2N H2N NDP sing 301 n n C3N C7N NDP sing 302 n n C3N C4N NDP sing 303 n n C7N O7N NDP doub 304 n n C7N N7N NDP sing 305 n n N7N H71N NDP sing 306 n n N7N H72N NDP sing 307 n n C4N C5N NDP sing 308 n n C4N H41N NDP sing 309 n n C4N H42N NDP sing 310 n n C5N C6N NDP doub 311 n n C5N H5N NDP sing 312 n n C6N H6N NDP sing 313 n n P2B O1X NDP doub 314 n n P2B O2X NDP sing 315 n n P2B O3X NDP sing 316 n n O2X HOP2 NDP sing 317 n n O3X HOP3 NDP sing 318 n n # _atom_sites.entry_id 4L4X _atom_sites.fract_transf_matrix[1][1] 0.022154 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00749 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005401 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 601 601 NDP NDP . C 3 HOH A 1 701 1 HOH HOH . C 3 HOH A 2 702 2 HOH HOH . C 3 HOH A 3 703 3 HOH HOH . C 3 HOH A 4 704 4 HOH HOH . C 3 HOH A 5 705 5 HOH HOH . C 3 HOH A 6 706 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . B 2 33.872 -22.845 24.754 1 89.49 ? PA NDP 601 A 1 HETATM 2 O O1A NDP . . . B 2 34.145 -23.85 25.833 1 91.03 ? O1A NDP 601 A 1 HETATM 3 O O2A NDP . . . B 2 34.823 -21.676 24.626 1 94.79 ? O2A NDP 601 A 1 HETATM 4 O O5B NDP . . . B 2 33.742 -23.599 23.34 1 82.23 ? O5B NDP 601 A 1 HETATM 5 C C5B NDP . . . B 2 34.35 -23.011 22.222 1 71.38 ? C5B NDP 601 A 1 HETATM 6 C C4B NDP . . . B 2 34.684 -24.144 21.339 1 78.26 ? C4B NDP 601 A 1 HETATM 7 O O4B NDP . . . B 2 34.584 -23.633 20.004 1 72.49 ? O4B NDP 601 A 1 HETATM 8 C C3B NDP . . . B 2 36.101 -24.571 21.696 1 81.39 ? C3B NDP 601 A 1 HETATM 9 O O3B NDP . . . B 2 36.181 -25.962 21.912 1 82.34 ? O3B NDP 601 A 1 HETATM 10 C C2B NDP . . . B 2 36.86 -24.222 20.464 1 84.21 ? C2B NDP 601 A 1 HETATM 11 O O2B NDP . . . B 2 37.631 -25.363 20.143 1 88.02 ? O2B NDP 601 A 1 HETATM 12 C C1B NDP . . . B 2 35.819 -23.88 19.377 1 69.56 ? C1B NDP 601 A 1 HETATM 13 N N9A NDP . . . B 2 36.318 -22.766 18.566 1 61.36 ? N9A NDP 601 A 1 HETATM 14 C C8A NDP . . . B 2 36.863 -21.546 18.898 1 57.34 ? C8A NDP 601 A 1 HETATM 15 N N7A NDP . . . B 2 37.274 -20.874 17.743 1 51.88 ? N7A NDP 601 A 1 HETATM 16 C C5A NDP . . . B 2 37.032 -21.698 16.706 1 49.73 ? C5A NDP 601 A 1 HETATM 17 C C6A NDP . . . B 2 37.225 -21.706 15.258 1 63.75 ? C6A NDP 601 A 1 HETATM 18 N N6A NDP . . . B 2 37.771 -20.629 14.642 1 79.51 ? N6A NDP 601 A 1 HETATM 19 N N1A NDP . . . B 2 36.826 -22.802 14.533 1 67.12 ? N1A NDP 601 A 1 HETATM 20 C C2A NDP . . . B 2 36.305 -23.883 15.146 1 65.31 ? C2A NDP 601 A 1 HETATM 21 N N3A NDP . . . B 2 36.12 -23.961 16.471 1 58.14 ? N3A NDP 601 A 1 HETATM 22 C C4A NDP . . . B 2 36.426 -22.927 17.263 1 58.6 ? C4A NDP 601 A 1 HETATM 23 O O3 NDP . . . B 2 32.399 -22.295 25.023 1 95.98 ? O3 NDP 601 A 1 HETATM 24 P PN NDP . . . B 2 31.327 -23.132 25.886 1 108.36 ? PN NDP 601 A 1 HETATM 25 O O1N NDP . . . B 2 31.425 -22.73 27.35 1 97.38 ? O1N NDP 601 A 1 HETATM 26 O O2N NDP . . . B 2 31.325 -24.58 25.407 1 103.19 ? O2N NDP 601 A 1 HETATM 27 O O5D NDP . . . B 2 29.977 -22.466 25.367 1 111.79 ? O5D NDP 601 A 1 HETATM 28 C C5D NDP . . . B 2 29.169 -23.116 24.396 1 124.78 ? C5D NDP 601 A 1 HETATM 29 C C4D NDP . . . B 2 28.153 -22.147 23.791 1 119.64 ? C4D NDP 601 A 1 HETATM 30 O O4D NDP . . . B 2 27.079 -21.839 24.712 1 122.49 ? O4D NDP 601 A 1 HETATM 31 C C3D NDP . . . B 2 28.81 -20.849 23.373 1 107.4 ? C3D NDP 601 A 1 HETATM 32 O O3D NDP . . . B 2 28.624 -20.669 21.963 1 99.75 ? O3D NDP 601 A 1 HETATM 33 C C2D NDP . . . B 2 28.14 -19.793 24.247 1 110.76 ? C2D NDP 601 A 1 HETATM 34 O O2D NDP . . . B 2 27.733 -18.675 23.456 1 106.36 ? O2D NDP 601 A 1 HETATM 35 C C1D NDP . . . B 2 26.941 -20.438 24.959 1 107.68 ? C1D NDP 601 A 1 HETATM 36 N N1N NDP . . . B 2 26.872 -20.174 26.424 1 97.02 ? N1N NDP 601 A 1 HETATM 37 C C2N NDP . . . B 2 27.561 -20.938 27.298 1 91.1 ? C2N NDP 601 A 1 HETATM 38 C C3N NDP . . . B 2 27.512 -20.736 28.682 1 96.41 ? C3N NDP 601 A 1 HETATM 39 C C7N NDP . . . B 2 28.294 -21.577 29.688 1 91.2 ? C7N NDP 601 A 1 HETATM 40 O O7N NDP . . . B 2 27.865 -21.676 30.854 1 79.53 ? O7N NDP 601 A 1 HETATM 41 N N7N NDP . . . B 2 29.449 -22.16 29.312 1 84.02 ? N7N NDP 601 A 1 HETATM 42 C C4N NDP . . . B 2 26.67 -19.612 29.242 1 101.18 ? C4N NDP 601 A 1 HETATM 43 C C5N NDP . . . B 2 25.969 -18.86 28.217 1 94.39 ? C5N NDP 601 A 1 HETATM 44 C C6N NDP . . . B 2 26.097 -19.174 26.867 1 93.9 ? C6N NDP 601 A 1 HETATM 45 P P2B NDP . . . B 2 39.057 -25.213 19.41 1 100.47 ? P2B NDP 601 A 1 HETATM 46 O O1X NDP . . . B 2 39.696 -24.185 20.304 1 96.02 ? O1X NDP 601 A 1 HETATM 47 O O2X NDP . . . B 2 39.568 -26.618 19.601 1 109.17 ? O2X NDP 601 A 1 HETATM 48 O O3X NDP . . . B 2 38.831 -24.835 17.954 1 73.29 ? O3X NDP 601 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #