data_4L50
#
_model_server_result.job_id            n41yhYqSRvww91UjuyxbBQ 
_model_server_result.datetime_utc      '2024-11-25 07:33:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4l50 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    4L50 
#
_exptl.entry_id    4L50 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              272.19 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-2,3,3-trihydroxy-6-methyl-4-oxoheptyl dihydrogen phosphate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4L50 
_cell.length_a            116.809 
_cell.length_b            116.809 
_cell.length_c            79.975 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4L50 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C8 H17 O8 P' 
_chem_comp.formula_weight    272.19 
_chem_comp.id                D8X 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-2,3,3-trihydroxy-6-methyl-4-oxoheptyl dihydrogen phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2' C1' D8X sing 83 n n 
C1' C1 D8X sing 84 n n 
C1' C22 D8X sing 85 n n 
O3P P D8X doub 86 n n 
C1 C2 D8X sing 87 n n 
O4 C4 D8X sing 88 n n 
C2 O2 D8X doub 89 n n 
C2 C3 D8X sing 90 n n 
P O2P D8X sing 91 n n 
P O1P D8X sing 92 n n 
P O5 D8X sing 93 n n 
O3 C3 D8X sing 94 n n 
C4 C3 D8X sing 95 n n 
C4 C5 D8X sing 96 n n 
C3 O3' D8X sing 97 n n 
O5 C5 D8X sing 98 n n 
O1P H1 D8X sing 99 n n 
O2P H2 D8X sing 100 n n 
C5 H3 D8X sing 101 n n 
C5 H4 D8X sing 102 n n 
C4 H5 D8X sing 103 n n 
O4 H6 D8X sing 104 n n 
O3 H7 D8X sing 105 n n 
O3' H8 D8X sing 106 n n 
C1 H9 D8X sing 107 n n 
C1 H10 D8X sing 108 n n 
C1' H11 D8X sing 109 n n 
C2' H12 D8X sing 110 n n 
C2' H13 D8X sing 111 n n 
C2' H14 D8X sing 112 n n 
C22 H15 D8X sing 113 n n 
C22 H16 D8X sing 114 n n 
C22 H17 D8X sing 115 n n 
#
_atom_sites.entry_id                     4L50 
_atom_sites.fract_transf_matrix[1][1]    0.008561 
_atom_sites.fract_transf_matrix[1][2]    0.004943 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009885 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012504 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 D8X A 1 501 501 D8X D8X . 
D 2 D8X B 1 401 502 D8X D8X . 
E 3 HOH A 1 601 1 HOH HOH . 
E 3 HOH A 2 602 4 HOH HOH . 
E 3 HOH A 3 603 5 HOH HOH . 
E 3 HOH A 4 604 7 HOH HOH . 
E 3 HOH A 5 605 8 HOH HOH . 
E 3 HOH A 6 606 9 HOH HOH . 
E 3 HOH A 7 607 11 HOH HOH . 
E 3 HOH A 8 608 13 HOH HOH . 
E 3 HOH A 9 609 14 HOH HOH . 
E 3 HOH A 10 610 16 HOH HOH . 
E 3 HOH A 11 611 17 HOH HOH . 
E 3 HOH A 12 612 18 HOH HOH . 
E 3 HOH A 13 613 20 HOH HOH . 
E 3 HOH A 14 614 21 HOH HOH . 
E 3 HOH A 15 615 25 HOH HOH . 
E 3 HOH A 16 616 26 HOH HOH . 
E 3 HOH A 17 617 30 HOH HOH . 
E 3 HOH A 18 618 31 HOH HOH . 
E 3 HOH A 19 619 32 HOH HOH . 
E 3 HOH A 20 620 33 HOH HOH . 
E 3 HOH A 21 621 35 HOH HOH . 
E 3 HOH A 22 622 36 HOH HOH . 
E 3 HOH A 23 623 38 HOH HOH . 
E 3 HOH A 24 624 39 HOH HOH . 
E 3 HOH A 25 625 40 HOH HOH . 
E 3 HOH A 26 626 41 HOH HOH . 
E 3 HOH A 27 627 42 HOH HOH . 
E 3 HOH A 28 628 43 HOH HOH . 
E 3 HOH A 29 629 48 HOH HOH . 
E 3 HOH A 30 630 55 HOH HOH . 
E 3 HOH A 31 631 58 HOH HOH . 
E 3 HOH A 32 632 61 HOH HOH . 
E 3 HOH A 33 633 65 HOH HOH . 
E 3 HOH A 34 634 69 HOH HOH . 
E 3 HOH A 35 635 71 HOH HOH . 
E 3 HOH A 36 636 73 HOH HOH . 
E 3 HOH A 37 637 76 HOH HOH . 
E 3 HOH A 38 638 79 HOH HOH . 
E 3 HOH A 39 639 80 HOH HOH . 
E 3 HOH A 40 640 82 HOH HOH . 
E 3 HOH A 41 641 83 HOH HOH . 
E 3 HOH A 42 642 85 HOH HOH . 
E 3 HOH A 43 643 89 HOH HOH . 
E 3 HOH A 44 644 90 HOH HOH . 
E 3 HOH A 45 645 92 HOH HOH . 
E 3 HOH A 46 646 94 HOH HOH . 
E 3 HOH A 47 647 96 HOH HOH . 
E 3 HOH A 48 648 98 HOH HOH . 
E 3 HOH A 49 649 99 HOH HOH . 
E 3 HOH A 50 650 101 HOH HOH . 
E 3 HOH A 51 651 102 HOH HOH . 
E 3 HOH A 52 652 103 HOH HOH . 
E 3 HOH A 53 653 109 HOH HOH . 
E 3 HOH A 54 654 115 HOH HOH . 
E 3 HOH A 55 655 117 HOH HOH . 
E 3 HOH A 56 656 125 HOH HOH . 
E 3 HOH A 57 657 127 HOH HOH . 
E 3 HOH A 58 658 128 HOH HOH . 
E 3 HOH A 59 659 129 HOH HOH . 
E 3 HOH A 60 660 131 HOH HOH . 
E 3 HOH A 61 661 133 HOH HOH . 
E 3 HOH A 62 662 134 HOH HOH . 
E 3 HOH A 63 663 135 HOH HOH . 
E 3 HOH A 64 664 137 HOH HOH . 
E 3 HOH A 65 665 139 HOH HOH . 
E 3 HOH A 66 666 145 HOH HOH . 
E 3 HOH A 67 667 147 HOH HOH . 
E 3 HOH A 68 668 149 HOH HOH . 
E 3 HOH A 69 669 151 HOH HOH . 
E 3 HOH A 70 670 152 HOH HOH . 
E 3 HOH A 71 671 155 HOH HOH . 
E 3 HOH A 72 672 157 HOH HOH . 
E 3 HOH A 73 673 158 HOH HOH . 
E 3 HOH A 74 674 160 HOH HOH . 
E 3 HOH A 75 675 164 HOH HOH . 
E 3 HOH A 76 676 167 HOH HOH . 
E 3 HOH A 77 677 168 HOH HOH . 
E 3 HOH A 78 678 169 HOH HOH . 
E 3 HOH A 79 679 170 HOH HOH . 
E 3 HOH A 80 680 171 HOH HOH . 
E 3 HOH A 81 681 172 HOH HOH . 
E 3 HOH A 82 682 173 HOH HOH . 
E 3 HOH A 83 683 174 HOH HOH . 
E 3 HOH A 84 684 188 HOH HOH . 
E 3 HOH A 85 685 189 HOH HOH . 
E 3 HOH A 86 686 190 HOH HOH . 
E 3 HOH A 87 687 191 HOH HOH . 
E 3 HOH A 88 688 192 HOH HOH . 
E 3 HOH A 89 689 193 HOH HOH . 
E 3 HOH A 90 690 194 HOH HOH . 
E 3 HOH A 91 691 196 HOH HOH . 
E 3 HOH A 92 692 197 HOH HOH . 
E 3 HOH A 93 693 198 HOH HOH . 
E 3 HOH A 94 694 199 HOH HOH . 
E 3 HOH A 95 695 200 HOH HOH . 
E 3 HOH A 96 696 201 HOH HOH . 
E 3 HOH A 97 697 203 HOH HOH . 
E 3 HOH A 98 698 210 HOH HOH . 
E 3 HOH A 99 699 211 HOH HOH . 
E 3 HOH A 100 700 212 HOH HOH . 
E 3 HOH A 101 701 213 HOH HOH . 
E 3 HOH A 102 702 214 HOH HOH . 
F 3 HOH B 1 501 2 HOH HOH . 
F 3 HOH B 2 502 3 HOH HOH . 
F 3 HOH B 3 503 6 HOH HOH . 
F 3 HOH B 4 504 10 HOH HOH . 
F 3 HOH B 5 505 12 HOH HOH . 
F 3 HOH B 6 506 15 HOH HOH . 
F 3 HOH B 7 507 19 HOH HOH . 
F 3 HOH B 8 508 22 HOH HOH . 
F 3 HOH B 9 509 23 HOH HOH . 
F 3 HOH B 10 510 24 HOH HOH . 
F 3 HOH B 11 511 27 HOH HOH . 
F 3 HOH B 12 512 28 HOH HOH . 
F 3 HOH B 13 513 29 HOH HOH . 
F 3 HOH B 14 514 34 HOH HOH . 
F 3 HOH B 15 515 37 HOH HOH . 
F 3 HOH B 16 516 44 HOH HOH . 
F 3 HOH B 17 517 45 HOH HOH . 
F 3 HOH B 18 518 46 HOH HOH . 
F 3 HOH B 19 519 47 HOH HOH . 
F 3 HOH B 20 520 49 HOH HOH . 
F 3 HOH B 21 521 50 HOH HOH . 
F 3 HOH B 22 522 51 HOH HOH . 
F 3 HOH B 23 523 52 HOH HOH . 
F 3 HOH B 24 524 53 HOH HOH . 
F 3 HOH B 25 525 54 HOH HOH . 
F 3 HOH B 26 526 56 HOH HOH . 
F 3 HOH B 27 527 57 HOH HOH . 
F 3 HOH B 28 528 59 HOH HOH . 
F 3 HOH B 29 529 60 HOH HOH . 
F 3 HOH B 30 530 62 HOH HOH . 
F 3 HOH B 31 531 63 HOH HOH . 
F 3 HOH B 32 532 64 HOH HOH . 
F 3 HOH B 33 533 66 HOH HOH . 
F 3 HOH B 34 534 67 HOH HOH . 
F 3 HOH B 35 535 68 HOH HOH . 
F 3 HOH B 36 536 70 HOH HOH . 
F 3 HOH B 37 537 72 HOH HOH . 
F 3 HOH B 38 538 74 HOH HOH . 
F 3 HOH B 39 539 75 HOH HOH . 
F 3 HOH B 40 540 77 HOH HOH . 
F 3 HOH B 41 541 78 HOH HOH . 
F 3 HOH B 42 542 81 HOH HOH . 
F 3 HOH B 43 543 84 HOH HOH . 
F 3 HOH B 44 544 86 HOH HOH . 
F 3 HOH B 45 545 87 HOH HOH . 
F 3 HOH B 46 546 88 HOH HOH . 
F 3 HOH B 47 547 91 HOH HOH . 
F 3 HOH B 48 548 93 HOH HOH . 
F 3 HOH B 49 549 95 HOH HOH . 
F 3 HOH B 50 550 97 HOH HOH . 
F 3 HOH B 51 551 100 HOH HOH . 
F 3 HOH B 52 552 104 HOH HOH . 
F 3 HOH B 53 553 105 HOH HOH . 
F 3 HOH B 54 554 106 HOH HOH . 
F 3 HOH B 55 555 107 HOH HOH . 
F 3 HOH B 56 556 108 HOH HOH . 
F 3 HOH B 57 557 110 HOH HOH . 
F 3 HOH B 58 558 111 HOH HOH . 
F 3 HOH B 59 559 112 HOH HOH . 
F 3 HOH B 60 560 113 HOH HOH . 
F 3 HOH B 61 561 114 HOH HOH . 
F 3 HOH B 62 562 116 HOH HOH . 
F 3 HOH B 63 563 118 HOH HOH . 
F 3 HOH B 64 564 119 HOH HOH . 
F 3 HOH B 65 565 120 HOH HOH . 
F 3 HOH B 66 566 121 HOH HOH . 
F 3 HOH B 67 567 122 HOH HOH . 
F 3 HOH B 68 568 123 HOH HOH . 
F 3 HOH B 69 569 124 HOH HOH . 
F 3 HOH B 70 570 126 HOH HOH . 
F 3 HOH B 71 571 130 HOH HOH . 
F 3 HOH B 72 572 132 HOH HOH . 
F 3 HOH B 73 573 136 HOH HOH . 
F 3 HOH B 74 574 138 HOH HOH . 
F 3 HOH B 75 575 140 HOH HOH . 
F 3 HOH B 76 576 141 HOH HOH . 
F 3 HOH B 77 577 142 HOH HOH . 
F 3 HOH B 78 578 143 HOH HOH . 
F 3 HOH B 79 579 144 HOH HOH . 
F 3 HOH B 80 580 146 HOH HOH . 
F 3 HOH B 81 581 148 HOH HOH . 
F 3 HOH B 82 582 150 HOH HOH . 
F 3 HOH B 83 583 153 HOH HOH . 
F 3 HOH B 84 584 154 HOH HOH . 
F 3 HOH B 85 585 156 HOH HOH . 
F 3 HOH B 86 586 159 HOH HOH . 
F 3 HOH B 87 587 161 HOH HOH . 
F 3 HOH B 88 588 162 HOH HOH . 
F 3 HOH B 89 589 163 HOH HOH . 
F 3 HOH B 90 590 165 HOH HOH . 
F 3 HOH B 91 591 166 HOH HOH . 
F 3 HOH B 92 592 175 HOH HOH . 
F 3 HOH B 93 593 176 HOH HOH . 
F 3 HOH B 94 594 177 HOH HOH . 
F 3 HOH B 95 595 178 HOH HOH . 
F 3 HOH B 96 596 179 HOH HOH . 
F 3 HOH B 97 597 180 HOH HOH . 
F 3 HOH B 98 598 181 HOH HOH . 
F 3 HOH B 99 599 182 HOH HOH . 
F 3 HOH B 100 600 183 HOH HOH . 
F 3 HOH B 101 601 184 HOH HOH . 
F 3 HOH B 102 602 185 HOH HOH . 
F 3 HOH B 103 603 186 HOH HOH . 
F 3 HOH B 104 604 187 HOH HOH . 
F 3 HOH B 105 605 195 HOH HOH . 
F 3 HOH B 106 606 202 HOH HOH . 
F 3 HOH B 107 607 204 HOH HOH . 
F 3 HOH B 108 608 205 HOH HOH . 
F 3 HOH B 109 609 206 HOH HOH . 
F 3 HOH B 110 610 207 HOH HOH . 
F 3 HOH B 111 611 208 HOH HOH . 
F 3 HOH B 112 612 209 HOH HOH . 
F 3 HOH B 113 613 215 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O3P D8X . . . D 2 -37.632 24.358 -3.811 1 23.59 ? O3P D8X 401 B 1 
HETATM 2 P P D8X . . . D 2 -38.129 22.968 -3.689 1 24.77 ? P D8X 401 B 1 
HETATM 3 O O1P D8X . . . D 2 -39.472 22.793 -4.179 1 23.02 ? O1P D8X 401 B 1 
HETATM 4 O O2P D8X . . . D 2 -37.929 22.419 -2.299 1 23.27 ? O2P D8X 401 B 1 
HETATM 5 O O5 D8X . . . D 2 -37.233 22.118 -4.612 1 23.13 ? O5 D8X 401 B 1 
HETATM 6 C C5 D8X . . . D 2 -35.804 22.227 -4.714 1 24.95 ? C5 D8X 401 B 1 
HETATM 7 C C4 D8X . . . D 2 -35.218 20.909 -4.214 1 29.54 ? C4 D8X 401 B 1 
HETATM 8 O O4 D8X . . . D 2 -35.428 20.939 -2.765 1 27.38 ? O4 D8X 401 B 1 
HETATM 9 C C3 D8X . . . D 2 -33.76 20.937 -4.647 1 34.77 ? C3 D8X 401 B 1 
HETATM 10 O O3 D8X . . . D 2 -33.514 20.494 -5.972 1 33.24 ? O3 D8X 401 B 1 
HETATM 11 O O3' D8X . . . D 2 -32.784 21.715 -4.04 1 31.22 ? O3' D8X 401 B 1 
HETATM 12 C C2 D8X . . . D 2 -33.28 19.611 -3.894 1 40.3 ? C2 D8X 401 B 1 
HETATM 13 O O2 D8X . . . D 2 -33.701 18.53 -4.267 1 46.82 ? O2 D8X 401 B 1 
HETATM 14 C C1 D8X . . . D 2 -32.191 19.652 -2.809 1 46.41 ? C1 D8X 401 B 1 
HETATM 15 C C1' D8X . . . D 2 -32.13 18.287 -2.019 1 45.44 ? C1' D8X 401 B 1 
HETATM 16 C C2' D8X . . . D 2 -31.021 18.244 -0.954 1 45.5 ? C2' D8X 401 B 1 
HETATM 17 C C22 D8X . . . D 2 -31.911 17.086 -2.915 1 50.04 ? C22 D8X 401 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           17 
#