data_4L58 # _model_server_result.job_id wIlyAp846me4SI-ACei-2g _model_server_result.datetime_utc '2024-12-06 20:07:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4l58 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":102}' # _entry.id 4L58 # _exptl.entry_id 4L58 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4L58 _cell.length_a 31.286 _cell.length_b 43.638 _cell.length_c 52.856 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4L58 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C THR 3 B THR 3 1_555 B N M3L 4 B M3L 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 B C M3L 4 B M3L 4 1_555 B N GLN 5 B GLN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 A ND1 HIS 31 A HIS 27 1_555 D ZN ZN . A ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc2 A SG CYS 34 A CYS 30 1_555 D ZN ZN . A ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc3 A SG CYS 26 A CYS 22 1_555 C ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc4 A SG CYS 51 A CYS 47 1_555 C ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc5 A SG CYS 9 A CYS 5 1_555 D ZN ZN . A ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc6 A SG CYS 23 A CYS 19 1_555 C ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc7 A SG CYS 11 A CYS 7 1_555 D ZN ZN . A ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc8 A SG CYS 48 A CYS 44 1_555 C ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4L58 _atom_sites.fract_transf_matrix[1][1] 0.031963 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022916 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018919 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 101 1 ZN ZN . D 3 ZN A 1 102 2 ZN ZN . E 4 HOH A 1 201 1 HOH HOH . E 4 HOH A 2 202 2 HOH HOH . E 4 HOH A 3 203 3 HOH HOH . E 4 HOH A 4 204 4 HOH HOH . E 4 HOH A 5 205 6 HOH HOH . E 4 HOH A 6 206 7 HOH HOH . E 4 HOH A 7 207 8 HOH HOH . E 4 HOH A 8 208 9 HOH HOH . E 4 HOH A 9 209 10 HOH HOH . E 4 HOH A 10 210 11 HOH HOH . E 4 HOH A 11 211 12 HOH HOH . E 4 HOH A 12 212 13 HOH HOH . E 4 HOH A 13 213 14 HOH HOH . E 4 HOH A 14 214 15 HOH HOH . E 4 HOH A 15 215 16 HOH HOH . E 4 HOH A 16 216 17 HOH HOH . E 4 HOH A 17 217 18 HOH HOH . E 4 HOH A 18 218 19 HOH HOH . E 4 HOH A 19 219 20 HOH HOH . E 4 HOH A 20 220 21 HOH HOH . E 4 HOH A 21 221 22 HOH HOH . E 4 HOH A 22 222 23 HOH HOH . E 4 HOH A 23 223 24 HOH HOH . E 4 HOH A 24 224 25 HOH HOH . E 4 HOH A 25 225 26 HOH HOH . E 4 HOH A 26 226 27 HOH HOH . E 4 HOH A 27 227 28 HOH HOH . E 4 HOH A 28 228 29 HOH HOH . E 4 HOH A 29 229 30 HOH HOH . E 4 HOH A 30 230 31 HOH HOH . E 4 HOH A 31 231 33 HOH HOH . E 4 HOH A 32 232 34 HOH HOH . E 4 HOH A 33 233 35 HOH HOH . E 4 HOH A 34 234 36 HOH HOH . E 4 HOH A 35 235 37 HOH HOH . E 4 HOH A 36 236 38 HOH HOH . E 4 HOH A 37 237 39 HOH HOH . E 4 HOH A 38 238 40 HOH HOH . E 4 HOH A 39 239 41 HOH HOH . E 4 HOH A 40 240 42 HOH HOH . E 4 HOH A 41 241 43 HOH HOH . E 4 HOH A 42 242 44 HOH HOH . E 4 HOH A 43 243 45 HOH HOH . E 4 HOH A 44 244 46 HOH HOH . E 4 HOH A 45 245 47 HOH HOH . E 4 HOH A 46 246 48 HOH HOH . E 4 HOH A 47 247 49 HOH HOH . E 4 HOH A 48 248 50 HOH HOH . E 4 HOH A 49 249 51 HOH HOH . E 4 HOH A 50 250 52 HOH HOH . E 4 HOH A 51 251 53 HOH HOH . E 4 HOH A 52 252 55 HOH HOH . E 4 HOH A 53 253 56 HOH HOH . E 4 HOH A 54 254 57 HOH HOH . E 4 HOH A 55 255 60 HOH HOH . E 4 HOH A 56 256 61 HOH HOH . E 4 HOH A 57 257 62 HOH HOH . E 4 HOH A 58 258 63 HOH HOH . E 4 HOH A 59 259 65 HOH HOH . E 4 HOH A 60 260 66 HOH HOH . E 4 HOH A 61 261 67 HOH HOH . E 4 HOH A 62 262 68 HOH HOH . E 4 HOH A 63 263 69 HOH HOH . E 4 HOH A 64 264 70 HOH HOH . E 4 HOH A 65 265 72 HOH HOH . E 4 HOH A 66 266 73 HOH HOH . E 4 HOH A 67 267 74 HOH HOH . E 4 HOH A 68 268 75 HOH HOH . E 4 HOH A 69 269 76 HOH HOH . E 4 HOH A 70 270 77 HOH HOH . E 4 HOH A 71 271 78 HOH HOH . E 4 HOH A 72 272 79 HOH HOH . E 4 HOH A 73 273 80 HOH HOH . E 4 HOH A 74 274 81 HOH HOH . E 4 HOH A 75 275 82 HOH HOH . E 4 HOH A 76 276 83 HOH HOH . E 4 HOH A 77 277 84 HOH HOH . E 4 HOH A 78 278 85 HOH HOH . E 4 HOH A 79 279 86 HOH HOH . E 4 HOH A 80 280 87 HOH HOH . E 4 HOH A 81 281 88 HOH HOH . E 4 HOH A 82 282 89 HOH HOH . E 4 HOH A 83 283 91 HOH HOH . E 4 HOH A 84 284 92 HOH HOH . E 4 HOH A 85 285 93 HOH HOH . E 4 HOH A 86 286 94 HOH HOH . E 4 HOH A 87 287 96 HOH HOH . E 4 HOH A 88 288 97 HOH HOH . E 4 HOH A 89 289 98 HOH HOH . E 4 HOH A 90 290 100 HOH HOH . E 4 HOH A 91 291 101 HOH HOH . E 4 HOH A 92 292 102 HOH HOH . E 4 HOH A 93 293 103 HOH HOH . E 4 HOH A 94 294 104 HOH HOH . E 4 HOH A 95 295 105 HOH HOH . E 4 HOH A 96 296 106 HOH HOH . E 4 HOH A 97 297 107 HOH HOH . E 4 HOH A 98 298 110 HOH HOH . E 4 HOH A 99 299 111 HOH HOH . E 4 HOH A 100 300 112 HOH HOH . E 4 HOH A 101 301 113 HOH HOH . E 4 HOH A 102 302 114 HOH HOH . E 4 HOH A 103 303 115 HOH HOH . E 4 HOH A 104 304 116 HOH HOH . E 4 HOH A 105 305 117 HOH HOH . E 4 HOH A 106 306 118 HOH HOH . E 4 HOH A 107 307 119 HOH HOH . E 4 HOH A 108 308 120 HOH HOH . E 4 HOH A 109 309 121 HOH HOH . E 4 HOH A 110 310 122 HOH HOH . E 4 HOH A 111 311 123 HOH HOH . E 4 HOH A 112 312 124 HOH HOH . E 4 HOH A 113 313 125 HOH HOH . F 4 HOH B 1 101 5 HOH HOH . F 4 HOH B 2 102 32 HOH HOH . F 4 HOH B 3 103 54 HOH HOH . F 4 HOH B 4 104 58 HOH HOH . F 4 HOH B 5 105 59 HOH HOH . F 4 HOH B 6 106 64 HOH HOH . F 4 HOH B 7 107 71 HOH HOH . F 4 HOH B 8 108 90 HOH HOH . F 4 HOH B 9 109 95 HOH HOH . F 4 HOH B 10 110 99 HOH HOH . F 4 HOH B 11 111 108 HOH HOH . F 4 HOH B 12 112 109 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -3.141 _atom_site.Cartn_y -5.423 _atom_site.Cartn_z 8.693 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 7.38 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 102 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #