data_4L65 # _model_server_result.job_id Tn-jo2TS9y28CH-0fVpQ8Q _model_server_result.datetime_utc '2024-12-19 12:49:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4l65 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":802}' # _entry.id 4L65 # _exptl.entry_id 4L65 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 459.456 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-METHYL-5,6,7,8-TETRAHYDROFOLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4L65 _cell.length_a 76.926 _cell.length_b 98.94 _cell.length_c 100.884 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4L65 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 679 A HIS 657 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc2 A SG CYS 681 A CYS 659 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc3 A SG CYS 761 A CYS 739 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc4 B ZN ZN . A ZN 801 1_555 E O HOH . A HOH 1034 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? # _chem_comp.formula 'C20 H25 N7 O6' _chem_comp.formula_weight 459.456 _chem_comp.id C2F _chem_comp.mon_nstd_flag . _chem_comp.name '5-METHYL-5,6,7,8-TETRAHYDROFOLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 C2F doub 70 n y N1 C8A C2F sing 71 n y C2 NA2 C2F sing 72 n n C2 N3 C2F sing 73 n y NA2 HN21 C2F sing 74 n n NA2 HN22 C2F sing 75 n n N3 C4 C2F sing 76 n y N3 HN3 C2F sing 77 n n C4 O4 C2F doub 78 n n C4 C4A C2F sing 79 n y C4A N5 C2F sing 80 n n C4A C8A C2F doub 81 n y N5 C6 C2F sing 82 n n N5 C11 C2F sing 83 n n C6 C7 C2F sing 84 n n C6 C9 C2F sing 85 n n C6 H6 C2F sing 86 n n C7 N8 C2F sing 87 n n C7 H71 C2F sing 88 n n C7 H72 C2F sing 89 n n N8 C8A C2F sing 90 n n N8 HN8 C2F sing 91 n n C9 N10 C2F sing 92 n n C9 H91 C2F sing 93 n n C9 H92 C2F sing 94 n n N10 C15 C2F sing 95 n n N10 HN1 C2F sing 96 n n C11 H111 C2F sing 97 n n C11 H112 C2F sing 98 n n C11 H113 C2F sing 99 n n C12 C13 C2F doub 100 n y C12 C17 C2F sing 101 n y C12 C C2F sing 102 n n C13 C14 C2F sing 103 n y C13 H13 C2F sing 104 n n C14 C15 C2F doub 105 n y C14 H14 C2F sing 106 n n C15 C16 C2F sing 107 n y C16 C17 C2F doub 108 n y C16 H16 C2F sing 109 n n C17 H17 C2F sing 110 n n C O C2F doub 111 n n C N C2F sing 112 n n N CA C2F sing 113 n n N HN C2F sing 114 n n CA CB C2F sing 115 n n CA CT C2F sing 116 n n CA HA C2F sing 117 n n CB CG C2F sing 118 n n CB HB1 C2F sing 119 n n CB HB2 C2F sing 120 n n CG CD C2F sing 121 n n CG HG1 C2F sing 122 n n CG HG2 C2F sing 123 n n CD OE1 C2F doub 124 n n CD OE2 C2F sing 125 n n OE2 HOE2 C2F sing 126 n n CT O1 C2F doub 127 n n CT O2 C2F sing 128 n n O2 HO2 C2F sing 129 n n # _atom_sites.entry_id 4L65 _atom_sites.fract_transf_matrix[1][1] 0.013 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010107 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009912 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 801 1 ZN ZN . C 3 C2F A 1 802 1 C2F C2F . D 4 MET A 1 803 1 MET MET . E 5 HOH A 1 901 1 HOH HOH . E 5 HOH A 2 902 2 HOH HOH . E 5 HOH A 3 903 3 HOH HOH . E 5 HOH A 4 904 5 HOH HOH . E 5 HOH A 5 905 6 HOH HOH . E 5 HOH A 6 906 7 HOH HOH . E 5 HOH A 7 907 8 HOH HOH . E 5 HOH A 8 908 9 HOH HOH . E 5 HOH A 9 909 10 HOH HOH . E 5 HOH A 10 910 11 HOH HOH . E 5 HOH A 11 911 12 HOH HOH . E 5 HOH A 12 912 13 HOH HOH . E 5 HOH A 13 913 14 HOH HOH . E 5 HOH A 14 914 15 HOH HOH . E 5 HOH A 15 915 16 HOH HOH . E 5 HOH A 16 916 17 HOH HOH . E 5 HOH A 17 917 18 HOH HOH . E 5 HOH A 18 918 22 HOH HOH . E 5 HOH A 19 919 23 HOH HOH . E 5 HOH A 20 920 24 HOH HOH . E 5 HOH A 21 921 26 HOH HOH . E 5 HOH A 22 922 28 HOH HOH . E 5 HOH A 23 923 29 HOH HOH . E 5 HOH A 24 924 30 HOH HOH . E 5 HOH A 25 925 32 HOH HOH . E 5 HOH A 26 926 33 HOH HOH . E 5 HOH A 27 927 34 HOH HOH . E 5 HOH A 28 928 36 HOH HOH . E 5 HOH A 29 929 37 HOH HOH . E 5 HOH A 30 930 38 HOH HOH . E 5 HOH A 31 931 39 HOH HOH . E 5 HOH A 32 932 40 HOH HOH . E 5 HOH A 33 933 43 HOH HOH . E 5 HOH A 34 934 44 HOH HOH . E 5 HOH A 35 935 45 HOH HOH . E 5 HOH A 36 936 46 HOH HOH . E 5 HOH A 37 937 49 HOH HOH . E 5 HOH A 38 938 50 HOH HOH . E 5 HOH A 39 939 51 HOH HOH . E 5 HOH A 40 940 52 HOH HOH . E 5 HOH A 41 941 53 HOH HOH . E 5 HOH A 42 942 54 HOH HOH . E 5 HOH A 43 943 56 HOH HOH . E 5 HOH A 44 944 58 HOH HOH . E 5 HOH A 45 945 59 HOH HOH . E 5 HOH A 46 946 60 HOH HOH . E 5 HOH A 47 947 62 HOH HOH . E 5 HOH A 48 948 63 HOH HOH . E 5 HOH A 49 949 64 HOH HOH . E 5 HOH A 50 950 67 HOH HOH . E 5 HOH A 51 951 68 HOH HOH . E 5 HOH A 52 952 69 HOH HOH . E 5 HOH A 53 953 70 HOH HOH . E 5 HOH A 54 954 71 HOH HOH . E 5 HOH A 55 955 72 HOH HOH . E 5 HOH A 56 956 75 HOH HOH . E 5 HOH A 57 957 77 HOH HOH . E 5 HOH A 58 958 79 HOH HOH . E 5 HOH A 59 959 80 HOH HOH . E 5 HOH A 60 960 81 HOH HOH . E 5 HOH A 61 961 85 HOH HOH . E 5 HOH A 62 962 86 HOH HOH . E 5 HOH A 63 963 87 HOH HOH . E 5 HOH A 64 964 88 HOH HOH . E 5 HOH A 65 965 89 HOH HOH . E 5 HOH A 66 966 93 HOH HOH . E 5 HOH A 67 967 97 HOH HOH . E 5 HOH A 68 968 99 HOH HOH . E 5 HOH A 69 969 101 HOH HOH . E 5 HOH A 70 970 102 HOH HOH . E 5 HOH A 71 971 104 HOH HOH . E 5 HOH A 72 972 105 HOH HOH . E 5 HOH A 73 973 106 HOH HOH . E 5 HOH A 74 974 108 HOH HOH . E 5 HOH A 75 975 109 HOH HOH . E 5 HOH A 76 976 111 HOH HOH . E 5 HOH A 77 977 115 HOH HOH . E 5 HOH A 78 978 116 HOH HOH . E 5 HOH A 79 979 119 HOH HOH . E 5 HOH A 80 980 121 HOH HOH . E 5 HOH A 81 981 124 HOH HOH . E 5 HOH A 82 982 125 HOH HOH . E 5 HOH A 83 983 129 HOH HOH . E 5 HOH A 84 984 132 HOH HOH . E 5 HOH A 85 985 136 HOH HOH . E 5 HOH A 86 986 138 HOH HOH . E 5 HOH A 87 987 143 HOH HOH . E 5 HOH A 88 988 148 HOH HOH . E 5 HOH A 89 989 149 HOH HOH . E 5 HOH A 90 990 152 HOH HOH . E 5 HOH A 91 991 153 HOH HOH . E 5 HOH A 92 992 154 HOH HOH . E 5 HOH A 93 993 156 HOH HOH . E 5 HOH A 94 994 157 HOH HOH . E 5 HOH A 95 995 159 HOH HOH . E 5 HOH A 96 996 161 HOH HOH . E 5 HOH A 97 997 162 HOH HOH . E 5 HOH A 98 998 168 HOH HOH . E 5 HOH A 99 999 172 HOH HOH . E 5 HOH A 100 1000 173 HOH HOH . E 5 HOH A 101 1001 176 HOH HOH . E 5 HOH A 102 1002 177 HOH HOH . E 5 HOH A 103 1003 184 HOH HOH . E 5 HOH A 104 1004 191 HOH HOH . E 5 HOH A 105 1005 194 HOH HOH . E 5 HOH A 106 1006 195 HOH HOH . E 5 HOH A 107 1007 196 HOH HOH . E 5 HOH A 108 1008 198 HOH HOH . E 5 HOH A 109 1009 205 HOH HOH . E 5 HOH A 110 1010 207 HOH HOH . E 5 HOH A 111 1011 208 HOH HOH . E 5 HOH A 112 1012 214 HOH HOH . E 5 HOH A 113 1013 217 HOH HOH . E 5 HOH A 114 1014 218 HOH HOH . E 5 HOH A 115 1015 221 HOH HOH . E 5 HOH A 116 1016 224 HOH HOH . E 5 HOH A 117 1017 226 HOH HOH . E 5 HOH A 118 1018 227 HOH HOH . E 5 HOH A 119 1019 228 HOH HOH . E 5 HOH A 120 1020 232 HOH HOH . E 5 HOH A 121 1021 235 HOH HOH . E 5 HOH A 122 1022 244 HOH HOH . E 5 HOH A 123 1023 250 HOH HOH . E 5 HOH A 124 1024 252 HOH HOH . E 5 HOH A 125 1025 259 HOH HOH . E 5 HOH A 126 1026 265 HOH HOH . E 5 HOH A 127 1027 270 HOH HOH . E 5 HOH A 128 1028 271 HOH HOH . E 5 HOH A 129 1029 276 HOH HOH . E 5 HOH A 130 1030 280 HOH HOH . E 5 HOH A 131 1031 300 HOH HOH . E 5 HOH A 132 1032 306 HOH HOH . E 5 HOH A 133 1033 308 HOH HOH . E 5 HOH A 134 1034 309 HOH HOH . E 5 HOH A 135 1035 310 HOH HOH . E 5 HOH A 136 1036 311 HOH HOH . E 5 HOH A 137 1037 312 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 C2F . . . C 3 -19.947 9.812 -25.723 1 65.69 ? N1 C2F 802 A 1 HETATM 2 C C2 C2F . . . C 3 -19.79 8.556 -26.202 1 61.05 ? C2 C2F 802 A 1 HETATM 3 N NA2 C2F . . . C 3 -18.934 8.361 -27.236 1 61.56 ? NA2 C2F 802 A 1 HETATM 4 N N3 C2F . . . C 3 -20.468 7.507 -25.689 1 71.06 ? N3 C2F 802 A 1 HETATM 5 C C4 C2F . . . C 3 -21.327 7.613 -24.66 1 71.71 ? C4 C2F 802 A 1 HETATM 6 O O4 C2F . . . C 3 -21.936 6.625 -24.201 1 80.94 ? O4 C2F 802 A 1 HETATM 7 C C4A C2F . . . C 3 -21.55 8.948 -24.094 1 71.17 ? C4A C2F 802 A 1 HETATM 8 N N5 C2F . . . C 3 -22.398 9.243 -23.038 1 75.15 ? N5 C2F 802 A 1 HETATM 9 C C6 C2F . . . C 3 -21.95 10.376 -22.205 1 81.97 ? C6 C2F 802 A 1 HETATM 10 C C7 C2F . . . C 3 -22.021 11.55 -23.178 1 76.34 ? C7 C2F 802 A 1 HETATM 11 N N8 C2F . . . C 3 -21.009 11.325 -24.21 1 68.79 ? N8 C2F 802 A 1 HETATM 12 C C8A C2F . . . C 3 -20.804 10.073 -24.702 1 65.24 ? C8A C2F 802 A 1 HETATM 13 C C9 C2F . . . C 3 -20.47 10.208 -21.751 1 82.35 ? C9 C2F 802 A 1 HETATM 14 N N10 C2F . . . C 3 -20.4 9.064 -20.899 1 83.17 ? N10 C2F 802 A 1 HETATM 15 C C11 C2F . . . C 3 -23.655 8.535 -22.821 1 80.86 ? C11 C2F 802 A 1 HETATM 16 C C12 C2F . . . C 3 -18.132 5.624 -21.022 1 85.2 ? C12 C2F 802 A 1 HETATM 17 C C13 C2F . . . C 3 -19.215 5.785 -20.166 1 82.59 ? C13 C2F 802 A 1 HETATM 18 C C14 C2F . . . C 3 -19.939 6.959 -20.17 1 83.37 ? C14 C2F 802 A 1 HETATM 19 C C15 C2F . . . C 3 -19.584 8.008 -21.01 1 85.66 ? C15 C2F 802 A 1 HETATM 20 C C16 C2F . . . C 3 -18.493 7.872 -21.88 1 85.39 ? C16 C2F 802 A 1 HETATM 21 C C17 C2F . . . C 3 -17.768 6.67 -21.886 1 82.52 ? C17 C2F 802 A 1 HETATM 22 C C C2F . . . C 3 -17.44 4.291 -20.941 1 83.77 ? C C2F 802 A 1 HETATM 23 O O C2F . . . C 3 -18.205 3.326 -20.808 1 77.91 ? O C2F 802 A 1 HETATM 24 N N C2F . . . C 3 -16.087 4.221 -20.959 1 80.79 ? N C2F 802 A 1 HETATM 25 C CA C2F . . . C 3 -15.287 2.998 -20.698 1 79.26 ? CA C2F 802 A 1 HETATM 26 C CB C2F . . . C 3 -14.638 2.36 -21.938 1 77.32 ? CB C2F 802 A 1 HETATM 27 C CG C2F . . . C 3 -15.62 2.271 -23.103 1 83.58 ? CG C2F 802 A 1 HETATM 28 C CD C2F . . . C 3 -15.453 1.034 -23.976 1 94.66 ? CD C2F 802 A 1 HETATM 29 O OE1 C2F . . . C 3 -16.077 1.021 -25.163 1 93.61 ? OE1 C2F 802 A 1 HETATM 30 O OE2 C2F . . . C 3 -14.792 0.049 -23.628 1 86.47 ? OE2 C2F 802 A 1 HETATM 31 C CT C2F . . . C 3 -14.186 3.25 -19.691 1 70.8 ? CT C2F 802 A 1 HETATM 32 O O1 C2F . . . C 3 -14.048 2.545 -18.704 1 74.04 ? O1 C2F 802 A 1 HETATM 33 O O2 C2F . . . C 3 -13.326 4.249 -19.836 1 65.47 ? O2 C2F 802 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #