data_4L7M
#
_model_server_result.job_id            2Ahnl8kAWZ8QkNxX9RdW3A 
_model_server_result.datetime_utc      '2025-03-04 08:20:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4l7m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    4L7M 
#
_exptl.entry_id    4L7M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.07 
_cell.angle_gamma         90 
_cell.entry_id            4L7M 
_cell.length_a            183.911 
_cell.length_b            42.445 
_cell.length_c            77.215 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4L7M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E 1 1 
B,C,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ARG 73 A ARG 69 1_555 A N MSE 74 A MSE 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 A C MSE 74 A MSE 70 1_555 A N MSE 75 A MSE 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 A C MSE 75 A MSE 71 1_555 A N VAL 76 A VAL 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale4 A C PRO 111 A PRO 107 1_555 A N MSE 112 A MSE 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale5 A C MSE 112 A MSE 108 1_555 A N GLY 113 A GLY 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale6 A C ASP 133 A ASP 129 1_555 A N MSE 134 A MSE 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale7 A C MSE 134 A MSE 130 1_555 A N MSE 135 A MSE 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale8 A C MSE 135 A MSE 131 1_555 A N ARG 136 A ARG 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale9 A C ASN 180 A ASN 176 1_555 A N MSE 181 A MSE 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale10 A C MSE 181 A MSE 177 1_555 A N LEU 182 A LEU 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale11 B C ARG 73 B ARG 69 1_555 B N MSE 74 B MSE 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale12 B C MSE 74 B MSE 70 1_555 B N MSE 75 B MSE 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale13 B C MSE 75 B MSE 71 1_555 B N VAL 76 B VAL 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale14 B C PRO 111 B PRO 107 1_555 B N MSE 112 B MSE 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale15 B C MSE 112 B MSE 108 1_555 B N GLY 113 B GLY 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale16 B C ASP 133 B ASP 129 1_555 B N MSE 134 B MSE 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale17 B C MSE 134 B MSE 130 1_555 B N MSE 135 B MSE 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale18 B C MSE 135 B MSE 131 1_555 B N ARG 136 B ARG 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale19 B C ASN 180 B ASN 176 1_555 B N MSE 181 B MSE 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale20 B C MSE 181 B MSE 177 1_555 B N LEU 182 B LEU 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4L7M 
_atom_sites.fract_transf_matrix[1][1]    0.005437 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00167 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02356 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013548 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL B 1 301 1 GOL GOL . 
D 2 GOL B 1 302 2 GOL GOL . 
E 3 HOH A 1 301 2 HOH HOH . 
E 3 HOH A 2 302 4 HOH HOH . 
E 3 HOH A 3 303 7 HOH HOH . 
E 3 HOH A 4 304 8 HOH HOH . 
E 3 HOH A 5 305 9 HOH HOH . 
E 3 HOH A 6 306 10 HOH HOH . 
E 3 HOH A 7 307 11 HOH HOH . 
E 3 HOH A 8 308 12 HOH HOH . 
E 3 HOH A 9 309 13 HOH HOH . 
E 3 HOH A 10 310 15 HOH HOH . 
E 3 HOH A 11 311 18 HOH HOH . 
E 3 HOH A 12 312 22 HOH HOH . 
E 3 HOH A 13 313 25 HOH HOH . 
E 3 HOH A 14 314 26 HOH HOH . 
E 3 HOH A 15 315 27 HOH HOH . 
E 3 HOH A 16 316 28 HOH HOH . 
E 3 HOH A 17 317 29 HOH HOH . 
E 3 HOH A 18 318 30 HOH HOH . 
E 3 HOH A 19 319 31 HOH HOH . 
E 3 HOH A 20 320 32 HOH HOH . 
E 3 HOH A 21 321 33 HOH HOH . 
E 3 HOH A 22 322 36 HOH HOH . 
E 3 HOH A 23 323 43 HOH HOH . 
E 3 HOH A 24 324 44 HOH HOH . 
E 3 HOH A 25 325 49 HOH HOH . 
E 3 HOH A 26 326 51 HOH HOH . 
E 3 HOH A 27 327 56 HOH HOH . 
E 3 HOH A 28 328 57 HOH HOH . 
E 3 HOH A 29 329 58 HOH HOH . 
E 3 HOH A 30 330 60 HOH HOH . 
E 3 HOH A 31 331 65 HOH HOH . 
E 3 HOH A 32 332 67 HOH HOH . 
F 3 HOH B 1 401 1 HOH HOH . 
F 3 HOH B 2 402 3 HOH HOH . 
F 3 HOH B 3 403 5 HOH HOH . 
F 3 HOH B 4 404 6 HOH HOH . 
F 3 HOH B 5 405 14 HOH HOH . 
F 3 HOH B 6 406 16 HOH HOH . 
F 3 HOH B 7 407 17 HOH HOH . 
F 3 HOH B 8 408 19 HOH HOH . 
F 3 HOH B 9 409 20 HOH HOH . 
F 3 HOH B 10 410 21 HOH HOH . 
F 3 HOH B 11 411 23 HOH HOH . 
F 3 HOH B 12 412 24 HOH HOH . 
F 3 HOH B 13 413 34 HOH HOH . 
F 3 HOH B 14 414 35 HOH HOH . 
F 3 HOH B 15 415 37 HOH HOH . 
F 3 HOH B 16 416 38 HOH HOH . 
F 3 HOH B 17 417 40 HOH HOH . 
F 3 HOH B 18 418 41 HOH HOH . 
F 3 HOH B 19 419 42 HOH HOH . 
F 3 HOH B 20 420 45 HOH HOH . 
F 3 HOH B 21 421 47 HOH HOH . 
F 3 HOH B 22 422 48 HOH HOH . 
F 3 HOH B 23 423 50 HOH HOH . 
F 3 HOH B 24 424 52 HOH HOH . 
F 3 HOH B 25 425 53 HOH HOH . 
F 3 HOH B 26 426 54 HOH HOH . 
F 3 HOH B 27 427 55 HOH HOH . 
F 3 HOH B 28 428 59 HOH HOH . 
F 3 HOH B 29 429 61 HOH HOH . 
F 3 HOH B 30 430 62 HOH HOH . 
F 3 HOH B 31 431 64 HOH HOH . 
F 3 HOH B 32 432 66 HOH HOH . 
F 3 HOH B 33 433 68 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 2 -3.677 16.533 -24.716 1 60.29 ? C1 GOL 301 B 1 
HETATM 2 O O1 GOL . . . C 2 -2.983 15.615 -23.894 1 57.69 ? O1 GOL 301 B 1 
HETATM 3 C C2 GOL . . . C 2 -2.878 17.815 -24.902 1 62.31 ? C2 GOL 301 B 1 
HETATM 4 O O2 GOL . . . C 2 -2.963 18.559 -23.707 1 65.29 ? O2 GOL 301 B 1 
HETATM 5 C C3 GOL . . . C 2 -3.444 18.615 -26.078 1 61.7 ? C3 GOL 301 B 1 
HETATM 6 O O3 GOL . . . C 2 -4.851 18.723 -25.979 1 60.35 ? O3 GOL 301 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           231 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#