data_4L89
#
_model_server_result.job_id            DsA8jxi2qlpUEM2QLmBjRA 
_model_server_result.datetime_utc      '2024-11-18 08:30:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4l89 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":209}' 
#
_entry.id    4L89 
#
_exptl.entry_id    4L89 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4L89 
_cell.length_a            57.346 
_cell.length_b            76.673 
_cell.length_c            40.636 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4L89 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             31 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              29 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            K 
_struct_conn.ptnr2_label_atom_id            S1P 
_struct_conn.ptnr2_label_comp_id            COA 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             COA 
_struct_conn.ptnr2_auth_seq_id              210 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.018 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 169 n n 
C1 C2 EDO sing 170 n n 
C1 H11 EDO sing 171 n n 
C1 H12 EDO sing 172 n n 
O1 HO1 EDO sing 173 n n 
C2 O2 EDO sing 174 n n 
C2 H21 EDO sing 175 n n 
C2 H22 EDO sing 176 n n 
O2 HO2 EDO sing 177 n n 
#
_atom_sites.entry_id                     4L89 
_atom_sites.fract_transf_matrix[1][1]    0.017438 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013042 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.024609 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 201 1 SO4 SO4 . 
C 2 SO4 A 1 202 2 SO4 SO4 . 
D 3 EDO A 1 203 1 EDO EDO . 
E 3 EDO A 1 204 1 EDO EDO . 
F 3 EDO A 1 205 1 EDO EDO . 
G 3 EDO A 1 206 1 EDO EDO . 
H 3 EDO A 1 207 1 EDO EDO . 
I 3 EDO A 1 208 1 EDO EDO . 
J 3 EDO A 1 209 1 EDO EDO . 
K 4 COA A 1 210 2598 COA COA . 
L 5 HOH A 1 301 4 HOH HOH . 
L 5 HOH A 2 302 7 HOH HOH . 
L 5 HOH A 3 303 9 HOH HOH . 
L 5 HOH A 4 304 10 HOH HOH . 
L 5 HOH A 5 305 11 HOH HOH . 
L 5 HOH A 6 306 13 HOH HOH . 
L 5 HOH A 7 307 14 HOH HOH . 
L 5 HOH A 8 308 15 HOH HOH . 
L 5 HOH A 9 309 17 HOH HOH . 
L 5 HOH A 10 310 18 HOH HOH . 
L 5 HOH A 11 311 19 HOH HOH . 
L 5 HOH A 12 312 20 HOH HOH . 
L 5 HOH A 13 313 21 HOH HOH . 
L 5 HOH A 14 314 22 HOH HOH . 
L 5 HOH A 15 315 23 HOH HOH . 
L 5 HOH A 16 316 24 HOH HOH . 
L 5 HOH A 17 317 1 HOH HOH . 
L 5 HOH A 18 318 2 HOH HOH . 
L 5 HOH A 19 319 3 HOH HOH . 
L 5 HOH A 20 320 4 HOH HOH . 
L 5 HOH A 21 321 7 HOH HOH . 
L 5 HOH A 22 322 8 HOH HOH . 
L 5 HOH A 23 323 9 HOH HOH . 
L 5 HOH A 24 324 12 HOH HOH . 
L 5 HOH A 25 325 17 HOH HOH . 
L 5 HOH A 26 326 19 HOH HOH . 
L 5 HOH A 27 327 20 HOH HOH . 
L 5 HOH A 28 328 21 HOH HOH . 
L 5 HOH A 29 329 23 HOH HOH . 
L 5 HOH A 30 330 26 HOH HOH . 
L 5 HOH A 31 331 27 HOH HOH . 
L 5 HOH A 32 332 28 HOH HOH . 
L 5 HOH A 33 333 29 HOH HOH . 
L 5 HOH A 34 334 30 HOH HOH . 
L 5 HOH A 35 335 36 HOH HOH . 
L 5 HOH A 36 336 37 HOH HOH . 
L 5 HOH A 37 337 43 HOH HOH . 
L 5 HOH A 38 338 44 HOH HOH . 
L 5 HOH A 39 339 47 HOH HOH . 
L 5 HOH A 40 340 48 HOH HOH . 
L 5 HOH A 41 341 49 HOH HOH . 
L 5 HOH A 42 342 50 HOH HOH . 
L 5 HOH A 43 343 54 HOH HOH . 
L 5 HOH A 44 344 55 HOH HOH . 
L 5 HOH A 45 345 56 HOH HOH . 
L 5 HOH A 46 346 57 HOH HOH . 
L 5 HOH A 47 347 59 HOH HOH . 
L 5 HOH A 48 348 63 HOH HOH . 
L 5 HOH A 49 349 64 HOH HOH . 
L 5 HOH A 50 350 65 HOH HOH . 
L 5 HOH A 51 351 66 HOH HOH . 
L 5 HOH A 52 352 67 HOH HOH . 
L 5 HOH A 53 353 68 HOH HOH . 
L 5 HOH A 54 354 69 HOH HOH . 
L 5 HOH A 55 355 70 HOH HOH . 
L 5 HOH A 56 356 71 HOH HOH . 
L 5 HOH A 57 357 72 HOH HOH . 
L 5 HOH A 58 358 73 HOH HOH . 
L 5 HOH A 59 359 74 HOH HOH . 
L 5 HOH A 60 360 75 HOH HOH . 
L 5 HOH A 61 361 76 HOH HOH . 
L 5 HOH A 62 362 77 HOH HOH . 
L 5 HOH A 63 363 78 HOH HOH . 
L 5 HOH A 64 364 79 HOH HOH . 
L 5 HOH A 65 365 80 HOH HOH . 
L 5 HOH A 66 366 81 HOH HOH . 
L 5 HOH A 67 367 82 HOH HOH . 
L 5 HOH A 68 368 3 HOH HOH . 
L 5 HOH A 69 369 4 HOH HOH . 
L 5 HOH A 70 370 5 HOH HOH . 
L 5 HOH A 71 371 8 HOH HOH . 
L 5 HOH A 72 372 11 HOH HOH . 
L 5 HOH A 73 373 14 HOH HOH . 
L 5 HOH A 74 374 15 HOH HOH . 
L 5 HOH A 75 375 16 HOH HOH . 
L 5 HOH A 76 376 17 HOH HOH . 
L 5 HOH A 77 377 18 HOH HOH . 
L 5 HOH A 78 378 19 HOH HOH . 
L 5 HOH A 79 379 21 HOH HOH . 
L 5 HOH A 80 380 24 HOH HOH . 
L 5 HOH A 81 381 25 HOH HOH . 
L 5 HOH A 82 382 29 HOH HOH . 
L 5 HOH A 83 383 31 HOH HOH . 
L 5 HOH A 84 384 32 HOH HOH . 
L 5 HOH A 85 385 33 HOH HOH . 
L 5 HOH A 86 386 34 HOH HOH . 
L 5 HOH A 87 387 36 HOH HOH . 
L 5 HOH A 88 388 37 HOH HOH . 
L 5 HOH A 89 389 39 HOH HOH . 
L 5 HOH A 90 390 40 HOH HOH . 
L 5 HOH A 91 391 41 HOH HOH . 
L 5 HOH A 92 392 42 HOH HOH . 
L 5 HOH A 93 393 43 HOH HOH . 
L 5 HOH A 94 394 44 HOH HOH . 
L 5 HOH A 95 395 45 HOH HOH . 
L 5 HOH A 96 396 46 HOH HOH . 
L 5 HOH A 97 397 48 HOH HOH . 
L 5 HOH A 98 398 49 HOH HOH . 
L 5 HOH A 99 399 51 HOH HOH . 
L 5 HOH A 100 400 52 HOH HOH . 
L 5 HOH A 101 401 53 HOH HOH . 
L 5 HOH A 102 402 56 HOH HOH . 
L 5 HOH A 103 403 57 HOH HOH . 
L 5 HOH A 104 404 59 HOH HOH . 
L 5 HOH A 105 405 60 HOH HOH . 
L 5 HOH A 106 406 61 HOH HOH . 
L 5 HOH A 107 407 65 HOH HOH . 
L 5 HOH A 108 408 66 HOH HOH . 
L 5 HOH A 109 409 67 HOH HOH . 
L 5 HOH A 110 410 68 HOH HOH . 
L 5 HOH A 111 411 69 HOH HOH . 
L 5 HOH A 112 412 70 HOH HOH . 
L 5 HOH A 113 413 71 HOH HOH . 
L 5 HOH A 114 414 72 HOH HOH . 
L 5 HOH A 115 415 74 HOH HOH . 
L 5 HOH A 116 416 75 HOH HOH . 
L 5 HOH A 117 417 76 HOH HOH . 
L 5 HOH A 118 418 77 HOH HOH . 
L 5 HOH A 119 419 78 HOH HOH . 
L 5 HOH A 120 420 79 HOH HOH . 
L 5 HOH A 121 421 80 HOH HOH . 
L 5 HOH A 122 422 81 HOH HOH . 
L 5 HOH A 123 423 82 HOH HOH . 
L 5 HOH A 124 424 86 HOH HOH . 
L 5 HOH A 125 425 87 HOH HOH . 
L 5 HOH A 126 426 88 HOH HOH . 
L 5 HOH A 127 427 89 HOH HOH . 
L 5 HOH A 128 428 90 HOH HOH . 
L 5 HOH A 129 429 93 HOH HOH . 
L 5 HOH A 130 430 94 HOH HOH . 
L 5 HOH A 131 431 95 HOH HOH . 
L 5 HOH A 132 432 96 HOH HOH . 
L 5 HOH A 133 433 97 HOH HOH . 
L 5 HOH A 134 434 100 HOH HOH . 
L 5 HOH A 135 435 101 HOH HOH . 
L 5 HOH A 136 436 103 HOH HOH . 
L 5 HOH A 137 437 104 HOH HOH . 
L 5 HOH A 138 438 105 HOH HOH . 
L 5 HOH A 139 439 106 HOH HOH . 
L 5 HOH A 140 440 108 HOH HOH . 
L 5 HOH A 141 441 110 HOH HOH . 
L 5 HOH A 142 442 112 HOH HOH . 
L 5 HOH A 143 443 113 HOH HOH . 
L 5 HOH A 144 444 114 HOH HOH . 
L 5 HOH A 145 445 116 HOH HOH . 
L 5 HOH A 146 446 117 HOH HOH . 
L 5 HOH A 147 447 120 HOH HOH . 
L 5 HOH A 148 448 121 HOH HOH . 
L 5 HOH A 149 449 123 HOH HOH . 
L 5 HOH A 150 450 127 HOH HOH . 
L 5 HOH A 151 451 129 HOH HOH . 
L 5 HOH A 152 452 134 HOH HOH . 
L 5 HOH A 153 453 135 HOH HOH . 
L 5 HOH A 154 454 138 HOH HOH . 
L 5 HOH A 155 455 141 HOH HOH . 
L 5 HOH A 156 456 143 HOH HOH . 
L 5 HOH A 157 457 144 HOH HOH . 
L 5 HOH A 158 458 148 HOH HOH . 
L 5 HOH A 159 459 149 HOH HOH . 
L 5 HOH A 160 460 150 HOH HOH . 
L 5 HOH A 161 461 153 HOH HOH . 
L 5 HOH A 162 462 155 HOH HOH . 
L 5 HOH A 163 463 156 HOH HOH . 
L 5 HOH A 164 464 157 HOH HOH . 
L 5 HOH A 165 465 162 HOH HOH . 
L 5 HOH A 166 466 163 HOH HOH . 
L 5 HOH A 167 467 164 HOH HOH . 
L 5 HOH A 168 468 165 HOH HOH . 
L 5 HOH A 169 469 166 HOH HOH . 
L 5 HOH A 170 470 167 HOH HOH . 
L 5 HOH A 171 471 168 HOH HOH . 
L 5 HOH A 172 472 169 HOH HOH . 
L 5 HOH A 173 473 170 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . J 3 -1.494 2.863 -7.014 1 62.87 ? C1 EDO 209 A 1 
HETATM 2 O O1 EDO . . . J 3 -1.087 1.637 -6.388 1 65.43 ? O1 EDO 209 A 1 
HETATM 3 C C2 EDO . . . J 3 -1.256 3.99 -6.036 1 60.73 ? C2 EDO 209 A 1 
HETATM 4 O O2 EDO . . . J 3 -0.372 4.957 -6.605 1 62.97 ? O2 EDO 209 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           4 
#