data_4L8J # _model_server_result.job_id lwghpqmfxEqK9RdV7rdkng _model_server_result.datetime_utc '2024-12-26 10:32:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4l8j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 4L8J # _exptl.entry_id 4L8J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4L8J _cell.length_a 69.536 _cell.length_b 69.536 _cell.length_c 187.676 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4L8J _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 187.676 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 27 A GLY 49 1_555 A N MSE 28 A MSE 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale2 A C MSE 28 A MSE 50 1_555 A N VAL 29 A VAL 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 A C ASN 125 A ASN 147 1_555 A N MSE 126 A MSE 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale4 A C MSE 126 A MSE 148 1_555 A N ARG 127 A ARG 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale5 A C LEU 255 A LEU 277 1_555 A N MSE 256 A MSE 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? covale ? covale6 A C MSE 256 A MSE 278 1_555 A N ASN 257 A ASN 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4L8J _atom_sites.fract_transf_matrix[1][1] 0.014381 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014381 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005328 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PEG A 1 401 351 PEG PEG . C 2 PEG A 1 402 352 PEG PEG . D 2 PEG A 1 403 353 PEG PEG . E 3 GOL A 1 404 354 GOL GOL . F 3 GOL A 1 405 355 GOL GOL . G 4 HOH A 1 501 356 HOH HOH . G 4 HOH A 2 502 357 HOH HOH . G 4 HOH A 3 503 358 HOH HOH . G 4 HOH A 4 504 359 HOH HOH . G 4 HOH A 5 505 360 HOH HOH . G 4 HOH A 6 506 361 HOH HOH . G 4 HOH A 7 507 362 HOH HOH . G 4 HOH A 8 508 363 HOH HOH . G 4 HOH A 9 509 364 HOH HOH . G 4 HOH A 10 510 365 HOH HOH . G 4 HOH A 11 511 366 HOH HOH . G 4 HOH A 12 512 367 HOH HOH . G 4 HOH A 13 513 368 HOH HOH . G 4 HOH A 14 514 369 HOH HOH . G 4 HOH A 15 515 370 HOH HOH . G 4 HOH A 16 516 371 HOH HOH . G 4 HOH A 17 517 372 HOH HOH . G 4 HOH A 18 518 373 HOH HOH . G 4 HOH A 19 519 374 HOH HOH . G 4 HOH A 20 520 375 HOH HOH . G 4 HOH A 21 521 376 HOH HOH . G 4 HOH A 22 522 377 HOH HOH . G 4 HOH A 23 523 378 HOH HOH . G 4 HOH A 24 524 379 HOH HOH . G 4 HOH A 25 525 380 HOH HOH . G 4 HOH A 26 526 381 HOH HOH . G 4 HOH A 27 527 382 HOH HOH . G 4 HOH A 28 528 383 HOH HOH . G 4 HOH A 29 529 384 HOH HOH . G 4 HOH A 30 530 385 HOH HOH . G 4 HOH A 31 531 386 HOH HOH . G 4 HOH A 32 532 387 HOH HOH . G 4 HOH A 33 533 388 HOH HOH . G 4 HOH A 34 534 389 HOH HOH . G 4 HOH A 35 535 390 HOH HOH . G 4 HOH A 36 536 391 HOH HOH . G 4 HOH A 37 537 392 HOH HOH . G 4 HOH A 38 538 393 HOH HOH . G 4 HOH A 39 539 394 HOH HOH . G 4 HOH A 40 540 395 HOH HOH . G 4 HOH A 41 541 396 HOH HOH . G 4 HOH A 42 542 397 HOH HOH . G 4 HOH A 43 543 398 HOH HOH . G 4 HOH A 44 544 399 HOH HOH . G 4 HOH A 45 545 400 HOH HOH . G 4 HOH A 46 546 401 HOH HOH . G 4 HOH A 47 547 402 HOH HOH . G 4 HOH A 48 548 403 HOH HOH . G 4 HOH A 49 549 404 HOH HOH . G 4 HOH A 50 550 405 HOH HOH . G 4 HOH A 51 551 406 HOH HOH . G 4 HOH A 52 552 407 HOH HOH . G 4 HOH A 53 553 408 HOH HOH . G 4 HOH A 54 554 409 HOH HOH . G 4 HOH A 55 555 410 HOH HOH . G 4 HOH A 56 556 411 HOH HOH . G 4 HOH A 57 557 412 HOH HOH . G 4 HOH A 58 558 413 HOH HOH . G 4 HOH A 59 559 414 HOH HOH . G 4 HOH A 60 560 415 HOH HOH . G 4 HOH A 61 561 416 HOH HOH . G 4 HOH A 62 562 417 HOH HOH . G 4 HOH A 63 563 418 HOH HOH . G 4 HOH A 64 564 419 HOH HOH . G 4 HOH A 65 565 420 HOH HOH . G 4 HOH A 66 566 421 HOH HOH . G 4 HOH A 67 567 422 HOH HOH . G 4 HOH A 68 568 423 HOH HOH . G 4 HOH A 69 569 424 HOH HOH . G 4 HOH A 70 570 425 HOH HOH . G 4 HOH A 71 571 426 HOH HOH . G 4 HOH A 72 572 427 HOH HOH . G 4 HOH A 73 573 428 HOH HOH . G 4 HOH A 74 574 429 HOH HOH . G 4 HOH A 75 575 430 HOH HOH . G 4 HOH A 76 576 431 HOH HOH . G 4 HOH A 77 577 432 HOH HOH . G 4 HOH A 78 578 433 HOH HOH . G 4 HOH A 79 579 434 HOH HOH . G 4 HOH A 80 580 435 HOH HOH . G 4 HOH A 81 581 436 HOH HOH . G 4 HOH A 82 582 437 HOH HOH . G 4 HOH A 83 583 438 HOH HOH . G 4 HOH A 84 584 439 HOH HOH . G 4 HOH A 85 585 440 HOH HOH . G 4 HOH A 86 586 441 HOH HOH . G 4 HOH A 87 587 442 HOH HOH . G 4 HOH A 88 588 443 HOH HOH . G 4 HOH A 89 589 444 HOH HOH . G 4 HOH A 90 590 445 HOH HOH . G 4 HOH A 91 591 446 HOH HOH . G 4 HOH A 92 592 447 HOH HOH . G 4 HOH A 93 593 448 HOH HOH . G 4 HOH A 94 594 449 HOH HOH . G 4 HOH A 95 595 450 HOH HOH . G 4 HOH A 96 596 451 HOH HOH . G 4 HOH A 97 597 452 HOH HOH . G 4 HOH A 98 598 453 HOH HOH . G 4 HOH A 99 599 454 HOH HOH . G 4 HOH A 100 600 455 HOH HOH . G 4 HOH A 101 601 456 HOH HOH . G 4 HOH A 102 602 457 HOH HOH . G 4 HOH A 103 603 458 HOH HOH . G 4 HOH A 104 604 459 HOH HOH . G 4 HOH A 105 605 460 HOH HOH . G 4 HOH A 106 606 461 HOH HOH . G 4 HOH A 107 607 462 HOH HOH . G 4 HOH A 108 608 463 HOH HOH . G 4 HOH A 109 609 464 HOH HOH . G 4 HOH A 110 610 465 HOH HOH . G 4 HOH A 111 611 466 HOH HOH . G 4 HOH A 112 612 467 HOH HOH . G 4 HOH A 113 613 468 HOH HOH . G 4 HOH A 114 614 469 HOH HOH . G 4 HOH A 115 615 470 HOH HOH . G 4 HOH A 116 616 471 HOH HOH . G 4 HOH A 117 617 472 HOH HOH . G 4 HOH A 118 618 473 HOH HOH . G 4 HOH A 119 619 474 HOH HOH . G 4 HOH A 120 620 475 HOH HOH . G 4 HOH A 121 621 476 HOH HOH . G 4 HOH A 122 622 477 HOH HOH . G 4 HOH A 123 623 478 HOH HOH . G 4 HOH A 124 624 479 HOH HOH . G 4 HOH A 125 625 480 HOH HOH . G 4 HOH A 126 626 481 HOH HOH . G 4 HOH A 127 627 482 HOH HOH . G 4 HOH A 128 628 483 HOH HOH . G 4 HOH A 129 629 484 HOH HOH . G 4 HOH A 130 630 485 HOH HOH . G 4 HOH A 131 631 486 HOH HOH . G 4 HOH A 132 632 487 HOH HOH . G 4 HOH A 133 633 488 HOH HOH . G 4 HOH A 134 634 489 HOH HOH . G 4 HOH A 135 635 490 HOH HOH . G 4 HOH A 136 636 491 HOH HOH . G 4 HOH A 137 637 492 HOH HOH . G 4 HOH A 138 638 493 HOH HOH . G 4 HOH A 139 639 494 HOH HOH . G 4 HOH A 140 640 495 HOH HOH . G 4 HOH A 141 641 496 HOH HOH . G 4 HOH A 142 642 497 HOH HOH . G 4 HOH A 143 643 498 HOH HOH . G 4 HOH A 144 644 499 HOH HOH . G 4 HOH A 145 645 500 HOH HOH . G 4 HOH A 146 646 501 HOH HOH . G 4 HOH A 147 647 502 HOH HOH . G 4 HOH A 148 648 503 HOH HOH . G 4 HOH A 149 649 504 HOH HOH . G 4 HOH A 150 650 505 HOH HOH . G 4 HOH A 151 651 506 HOH HOH . G 4 HOH A 152 652 507 HOH HOH . G 4 HOH A 153 653 508 HOH HOH . G 4 HOH A 154 654 509 HOH HOH . G 4 HOH A 155 655 510 HOH HOH . G 4 HOH A 156 656 511 HOH HOH . G 4 HOH A 157 657 512 HOH HOH . G 4 HOH A 158 658 513 HOH HOH . G 4 HOH A 159 659 514 HOH HOH . G 4 HOH A 160 660 515 HOH HOH . G 4 HOH A 161 661 516 HOH HOH . G 4 HOH A 162 662 517 HOH HOH . G 4 HOH A 163 663 518 HOH HOH . G 4 HOH A 164 664 519 HOH HOH . G 4 HOH A 165 665 520 HOH HOH . G 4 HOH A 166 666 521 HOH HOH . G 4 HOH A 167 667 522 HOH HOH . G 4 HOH A 168 668 523 HOH HOH . G 4 HOH A 169 669 524 HOH HOH . G 4 HOH A 170 670 525 HOH HOH . G 4 HOH A 171 671 526 HOH HOH . G 4 HOH A 172 672 527 HOH HOH . G 4 HOH A 173 673 528 HOH HOH . G 4 HOH A 174 674 529 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 38.093 4.06 24.707 1 60.46 ? C1 GOL 405 A 1 HETATM 2 O O1 GOL . . . F 3 37.653 2.711 24.797 1 60.1 ? O1 GOL 405 A 1 HETATM 3 C C2 GOL . . . F 3 36.973 4.934 24.192 1 61.59 ? C2 GOL 405 A 1 HETATM 4 O O2 GOL . . . F 3 36.652 5.967 25.14 1 61.88 ? O2 GOL 405 A 1 HETATM 5 C C3 GOL . . . F 3 37.377 5.561 22.88 1 58.78 ? C3 GOL 405 A 1 HETATM 6 O O3 GOL . . . F 3 37.674 4.571 21.903 1 55.34 ? O3 GOL 405 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #