data_4L8O # _model_server_result.job_id kEh6Ucrn6IvVTFv5XYWSAA _model_server_result.datetime_utc '2024-11-05 00:31:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4l8o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 4L8O # _exptl.entry_id 4L8O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4L8O _cell.length_a 52.956 _cell.length_b 52.956 _cell.length_c 428.627 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4L8O _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 105 A HIS 86 1_555 B CO CO . A CO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc2 A OE1 GLU 124 A GLU 105 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? metalc ? metalc3 B CO CO . A CO 201 1_555 I O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc4 C NA NA . A NA 202 1_555 I O HOH . A HOH 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.955 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 4L8O _atom_sites.fract_transf_matrix[1][1] 0.018884 _atom_sites.fract_transf_matrix[1][2] 0.010902 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021805 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002333 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CO A 1 201 201 CO CO . C 3 NA A 1 202 202 NA NA . D 4 SO4 A 1 203 203 SO4 SO4 . E 5 EDO A 1 204 204 EDO EDO . F 5 EDO A 1 205 205 EDO EDO . G 5 EDO A 1 206 206 EDO EDO . H 5 EDO A 1 207 207 EDO EDO . I 6 HOH A 1 301 208 HOH HOH . I 6 HOH A 2 302 209 HOH HOH . I 6 HOH A 3 303 210 HOH HOH . I 6 HOH A 4 304 211 HOH HOH . I 6 HOH A 5 305 212 HOH HOH . I 6 HOH A 6 306 213 HOH HOH . I 6 HOH A 7 307 214 HOH HOH . I 6 HOH A 8 308 215 HOH HOH . I 6 HOH A 9 309 216 HOH HOH . I 6 HOH A 10 310 217 HOH HOH . I 6 HOH A 11 311 218 HOH HOH . I 6 HOH A 12 312 219 HOH HOH . I 6 HOH A 13 313 220 HOH HOH . I 6 HOH A 14 314 221 HOH HOH . I 6 HOH A 15 315 222 HOH HOH . I 6 HOH A 16 316 223 HOH HOH . I 6 HOH A 17 317 224 HOH HOH . I 6 HOH A 18 318 225 HOH HOH . I 6 HOH A 19 319 226 HOH HOH . I 6 HOH A 20 320 227 HOH HOH . I 6 HOH A 21 321 228 HOH HOH . I 6 HOH A 22 322 229 HOH HOH . I 6 HOH A 23 323 230 HOH HOH . I 6 HOH A 24 324 231 HOH HOH . I 6 HOH A 25 325 232 HOH HOH . I 6 HOH A 26 326 233 HOH HOH . I 6 HOH A 27 327 234 HOH HOH . I 6 HOH A 28 328 235 HOH HOH . I 6 HOH A 29 329 236 HOH HOH . I 6 HOH A 30 330 237 HOH HOH . I 6 HOH A 31 331 238 HOH HOH . I 6 HOH A 32 332 239 HOH HOH . I 6 HOH A 33 333 240 HOH HOH . I 6 HOH A 34 334 241 HOH HOH . I 6 HOH A 35 335 242 HOH HOH . I 6 HOH A 36 336 243 HOH HOH . I 6 HOH A 37 337 244 HOH HOH . I 6 HOH A 38 338 245 HOH HOH . I 6 HOH A 39 339 246 HOH HOH . I 6 HOH A 40 340 247 HOH HOH . I 6 HOH A 41 341 248 HOH HOH . I 6 HOH A 42 342 249 HOH HOH . I 6 HOH A 43 343 250 HOH HOH . I 6 HOH A 44 344 251 HOH HOH . I 6 HOH A 45 345 252 HOH HOH . I 6 HOH A 46 346 253 HOH HOH . I 6 HOH A 47 347 254 HOH HOH . I 6 HOH A 48 348 255 HOH HOH . I 6 HOH A 49 349 256 HOH HOH . I 6 HOH A 50 350 257 HOH HOH . I 6 HOH A 51 351 258 HOH HOH . I 6 HOH A 52 352 259 HOH HOH . I 6 HOH A 53 353 260 HOH HOH . I 6 HOH A 54 354 261 HOH HOH . I 6 HOH A 55 355 262 HOH HOH . I 6 HOH A 56 356 263 HOH HOH . I 6 HOH A 57 357 264 HOH HOH . I 6 HOH A 58 358 265 HOH HOH . I 6 HOH A 59 359 266 HOH HOH . I 6 HOH A 60 360 267 HOH HOH . I 6 HOH A 61 361 268 HOH HOH . I 6 HOH A 62 362 269 HOH HOH . I 6 HOH A 63 363 270 HOH HOH . I 6 HOH A 64 364 271 HOH HOH . I 6 HOH A 65 365 272 HOH HOH . I 6 HOH A 66 366 273 HOH HOH . I 6 HOH A 67 367 274 HOH HOH . I 6 HOH A 68 368 275 HOH HOH . I 6 HOH A 69 369 276 HOH HOH . I 6 HOH A 70 370 277 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 5 -0.969 20.25 39.571 1 46.99 ? C1 EDO 205 A 1 HETATM 2 O O1 EDO . . . F 5 -1.653 19.911 40.778 1 45.23 ? O1 EDO 205 A 1 HETATM 3 C C2 EDO . . . F 5 -1.495 21.588 39.083 1 57.26 ? C2 EDO 205 A 1 HETATM 4 O O2 EDO . . . F 5 -2.735 21.399 38.401 1 49.85 ? O2 EDO 205 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #