data_4L8P # _model_server_result.job_id 5L5vyl6rLt32opgHHgFfJA _model_server_result.datetime_utc '2024-11-05 00:41:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4l8p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 4L8P # _exptl.entry_id 4L8P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4L8P _cell.length_a 58.905 _cell.length_b 58.905 _cell.length_c 91.34 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4L8P _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 29.4525 51.013226 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -29.4525 51.013226 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 19 A GLY 0 1_555 A N MSE 20 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C MSE 20 A MSE 1 1_555 A N THR 21 A THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C ALA 93 A ALA 74 1_555 A N MSE 94 A MSE 75 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.339 ? covale ? covale4 A C ALA 93 A ALA 74 1_555 A N MSE 94 A MSE 75 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.339 ? covale ? covale5 A C MSE 94 A MSE 75 1_555 A N PRO 95 A PRO 76 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale6 A C MSE 94 A MSE 75 1_555 A N PRO 95 A PRO 76 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale7 A C SER 100 A SER 81 1_555 A N MSE 101 A MSE 82 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.326 ? covale ? covale8 A C SER 100 A SER 81 1_555 A N MSE 101 A MSE 82 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.328 ? covale ? covale9 A C MSE 101 A MSE 82 1_555 A N HIS 102 A HIS 83 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale10 A C MSE 101 A MSE 82 1_555 A N HIS 102 A HIS 83 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale11 A C HIS 102 A HIS 83 1_555 A N MSE 103 A MSE 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 A C MSE 103 A MSE 84 1_555 A N GLY 104 A GLY 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale13 A C PHE 171 A PHE 152 1_555 A N MSE 172 A MSE 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale14 A C MSE 172 A MSE 153 1_555 A N ARG 173 A ARG 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale15 A C ASN 182 A ASN 163 1_555 A N MSE 183 A MSE 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale16 A C MSE 183 A MSE 164 1_555 A N HIS 184 A HIS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A NE2 HIS 105 A HIS 86 1_555 B NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc2 A OE1 GLU 124 A GLU 105 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc3 B NI NI . A NI 201 1_555 F O HOH . A HOH 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc4 C NA NA . A NA 202 1_555 F O HOH . A HOH 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 4L8P _atom_sites.fract_transf_matrix[1][1] 0.016977 _atom_sites.fract_transf_matrix[1][2] 0.009801 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019603 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010948 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI A 1 201 201 NI NI . C 3 NA A 1 202 202 NA NA . D 4 PGE A 1 203 203 PGE PGE . E 5 1PE A 1 204 204 1PE 1PE . F 6 HOH A 1 301 205 HOH HOH . F 6 HOH A 2 302 206 HOH HOH . F 6 HOH A 3 303 207 HOH HOH . F 6 HOH A 4 304 208 HOH HOH . F 6 HOH A 5 305 209 HOH HOH . F 6 HOH A 6 306 210 HOH HOH . F 6 HOH A 7 307 211 HOH HOH . F 6 HOH A 8 308 212 HOH HOH . F 6 HOH A 9 309 213 HOH HOH . F 6 HOH A 10 310 214 HOH HOH . F 6 HOH A 11 311 215 HOH HOH . F 6 HOH A 12 312 216 HOH HOH . F 6 HOH A 13 313 217 HOH HOH . F 6 HOH A 14 314 218 HOH HOH . F 6 HOH A 15 315 219 HOH HOH . F 6 HOH A 16 316 220 HOH HOH . F 6 HOH A 17 317 221 HOH HOH . F 6 HOH A 18 318 222 HOH HOH . F 6 HOH A 19 319 223 HOH HOH . F 6 HOH A 20 320 224 HOH HOH . F 6 HOH A 21 321 225 HOH HOH . F 6 HOH A 22 322 226 HOH HOH . F 6 HOH A 23 323 227 HOH HOH . F 6 HOH A 24 324 228 HOH HOH . F 6 HOH A 25 325 229 HOH HOH . F 6 HOH A 26 326 230 HOH HOH . F 6 HOH A 27 327 231 HOH HOH . F 6 HOH A 28 328 232 HOH HOH . F 6 HOH A 29 329 233 HOH HOH . F 6 HOH A 30 330 234 HOH HOH . F 6 HOH A 31 331 235 HOH HOH . F 6 HOH A 32 332 236 HOH HOH . F 6 HOH A 33 333 237 HOH HOH . F 6 HOH A 34 334 238 HOH HOH . F 6 HOH A 35 335 239 HOH HOH . F 6 HOH A 36 336 240 HOH HOH . F 6 HOH A 37 337 241 HOH HOH . F 6 HOH A 38 338 242 HOH HOH . F 6 HOH A 39 339 243 HOH HOH . F 6 HOH A 40 340 244 HOH HOH . F 6 HOH A 41 341 245 HOH HOH . F 6 HOH A 42 342 246 HOH HOH . F 6 HOH A 43 343 247 HOH HOH . F 6 HOH A 44 344 248 HOH HOH . F 6 HOH A 45 345 249 HOH HOH . F 6 HOH A 46 346 250 HOH HOH . F 6 HOH A 47 347 251 HOH HOH . F 6 HOH A 48 348 252 HOH HOH . F 6 HOH A 49 349 253 HOH HOH . F 6 HOH A 50 350 254 HOH HOH . F 6 HOH A 51 351 255 HOH HOH . F 6 HOH A 52 352 256 HOH HOH . F 6 HOH A 53 353 257 HOH HOH . F 6 HOH A 54 354 258 HOH HOH . F 6 HOH A 55 355 259 HOH HOH . F 6 HOH A 56 356 260 HOH HOH . F 6 HOH A 57 357 261 HOH HOH . F 6 HOH A 58 358 262 HOH HOH . F 6 HOH A 59 359 263 HOH HOH . F 6 HOH A 60 360 264 HOH HOH . F 6 HOH A 61 361 265 HOH HOH . F 6 HOH A 62 362 266 HOH HOH . F 6 HOH A 63 363 267 HOH HOH . F 6 HOH A 64 364 268 HOH HOH . F 6 HOH A 65 365 269 HOH HOH . F 6 HOH A 66 366 270 HOH HOH . F 6 HOH A 67 367 271 HOH HOH . F 6 HOH A 68 368 272 HOH HOH . F 6 HOH A 69 369 273 HOH HOH . F 6 HOH A 70 370 274 HOH HOH . F 6 HOH A 71 371 275 HOH HOH . F 6 HOH A 72 372 276 HOH HOH . F 6 HOH A 73 373 277 HOH HOH . F 6 HOH A 74 374 278 HOH HOH . F 6 HOH A 75 375 279 HOH HOH . F 6 HOH A 76 376 280 HOH HOH . F 6 HOH A 77 377 281 HOH HOH . F 6 HOH A 78 378 282 HOH HOH . F 6 HOH A 79 379 283 HOH HOH . F 6 HOH A 80 380 284 HOH HOH . F 6 HOH A 81 381 285 HOH HOH . F 6 HOH A 82 382 286 HOH HOH . F 6 HOH A 83 383 287 HOH HOH . F 6 HOH A 84 384 288 HOH HOH . F 6 HOH A 85 385 289 HOH HOH . F 6 HOH A 86 386 290 HOH HOH . F 6 HOH A 87 387 291 HOH HOH . F 6 HOH A 88 388 292 HOH HOH . F 6 HOH A 89 389 293 HOH HOH . F 6 HOH A 90 390 294 HOH HOH . F 6 HOH A 91 391 295 HOH HOH . F 6 HOH A 92 392 296 HOH HOH . F 6 HOH A 93 393 297 HOH HOH . F 6 HOH A 94 394 298 HOH HOH . F 6 HOH A 95 395 299 HOH HOH . F 6 HOH A 96 396 300 HOH HOH . F 6 HOH A 97 397 301 HOH HOH . F 6 HOH A 98 398 302 HOH HOH . F 6 HOH A 99 399 303 HOH HOH . F 6 HOH A 100 400 304 HOH HOH . F 6 HOH A 101 401 305 HOH HOH . F 6 HOH A 102 402 306 HOH HOH . F 6 HOH A 103 403 307 HOH HOH . F 6 HOH A 104 404 308 HOH HOH . F 6 HOH A 105 405 309 HOH HOH . F 6 HOH A 106 406 310 HOH HOH . F 6 HOH A 107 407 311 HOH HOH . F 6 HOH A 108 408 312 HOH HOH . F 6 HOH A 109 409 313 HOH HOH . F 6 HOH A 110 410 314 HOH HOH . F 6 HOH A 111 411 315 HOH HOH . F 6 HOH A 112 412 316 HOH HOH . F 6 HOH A 113 413 317 HOH HOH . F 6 HOH A 114 414 318 HOH HOH . F 6 HOH A 115 415 319 HOH HOH . F 6 HOH A 116 416 320 HOH HOH . F 6 HOH A 117 417 321 HOH HOH . F 6 HOH A 118 418 322 HOH HOH . F 6 HOH A 119 419 323 HOH HOH . F 6 HOH A 120 420 324 HOH HOH . F 6 HOH A 121 421 325 HOH HOH . F 6 HOH A 122 422 326 HOH HOH . F 6 HOH A 123 423 327 HOH HOH . F 6 HOH A 124 424 328 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . E 5 17.513 33.4 5.128 1 28.99 ? OH2 1PE 204 A 1 HETATM 2 C C12 1PE . . . E 5 18.692 33.18 5.913 1 37.58 ? C12 1PE 204 A 1 HETATM 3 C C22 1PE . . . E 5 19.583 34.416 5.741 1 41.21 ? C22 1PE 204 A 1 HETATM 4 O OH3 1PE . . . E 5 20.942 34.2 5.348 1 49.07 ? OH3 1PE 204 A 1 HETATM 5 C C13 1PE . . . E 5 22 33.962 3.155 1 35.37 ? C13 1PE 204 A 1 HETATM 6 C C23 1PE . . . E 5 21.337 33.272 4.336 1 46.36 ? C23 1PE 204 A 1 HETATM 7 O OH4 1PE . . . E 5 21.261 33.57 2.005 1 37.73 ? OH4 1PE 204 A 1 HETATM 8 C C14 1PE . . . E 5 20.393 33.997 -0.164 1 33.98 ? C14 1PE 204 A 1 HETATM 9 C C24 1PE . . . E 5 21.399 34.416 0.875 1 40.9 ? C24 1PE 204 A 1 HETATM 10 O OH5 1PE . . . E 5 19.223 34.78 -0.032 1 36.7 ? OH5 1PE 204 A 1 HETATM 11 C C15 1PE . . . E 5 17.046 35.341 -0.92 1 39.96 ? C15 1PE 204 A 1 HETATM 12 C C25 1PE . . . E 5 18.474 34.924 -1.244 1 40.42 ? C25 1PE 204 A 1 HETATM 13 O OH6 1PE . . . E 5 16.543 34.321 -0.056 1 41.96 ? OH6 1PE 204 A 1 HETATM 14 C C16 1PE . . . E 5 14.272 33.801 0.376 1 45.62 ? C16 1PE 204 A 1 HETATM 15 C C26 1PE . . . E 5 15.444 34.65 0.777 1 43.44 ? C26 1PE 204 A 1 HETATM 16 O OH7 1PE . . . E 5 13.52 33.45 1.535 1 44.68 ? OH7 1PE 204 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #