data_4L8Q # _model_server_result.job_id yIZ3Nu4o1qwDazLQZ_yO-g _model_server_result.datetime_utc '2024-11-04 23:45:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4l8q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":308}' # _entry.id 4L8Q # _exptl.entry_id 4L8Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4L8Q _cell.length_a 63.422 _cell.length_b 65.152 _cell.length_c 106.708 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4L8Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -65.152 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -65.152 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 H N N ? 7 I N N ? 7 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 8 A GLU 8 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc2 A OD2 ASP 10 A ASP 10 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc3 A OD1 ASP 10 A ASP 10 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc4 A OD2 ASP 10 A ASP 10 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc5 A O TYR 12 A TYR 12 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc6 A OD1 ASN 14 A ASN 14 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc7 A OD2 ASP 19 A ASP 19 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc8 A OD1 ASP 19 A ASP 19 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc9 A NE2 HIS 24 A HIS 24 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? metalc ? metalc10 A OD1 ASP 80 A ASP 80 1_555 G CD CD . A CD 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc11 A OD1 ASP 82 A ASP 82 1_555 G CD CD . A CD 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc12 A OD2 ASP 82 A ASP 82 1_555 G CD CD . A CD 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc13 A OE1 GLU 87 A GLU 87 1_555 F CD CD . A CD 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc14 A OE2 GLU 87 A GLU 87 1_555 F CD CD . A CD 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc15 A OE2 GLU 183 A GLU 183 1_555 F CD CD . A CD 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc16 A OE1 GLU 183 A GLU 183 1_555 F CD CD . A CD 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc17 B CA CA . A CA 301 1_555 K O HOH . A HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc18 B CA CA . A CA 301 1_555 K O HOH . A HOH 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc19 C MN MN . A MN 302 1_555 K O HOH . A HOH 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc20 C MN MN . A MN 302 1_555 K O HOH . A HOH 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc21 F CD CD . A CD 305 1_555 K O HOH . A HOH 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc22 F CD CD . A CD 305 1_555 K O HOH . A HOH 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 4L8Q _atom_sites.fract_transf_matrix[1][1] 0.015767 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015349 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009371 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 301 1 CA CA . C 3 MN A 1 302 1 MN MN . D 4 XMM A 1 303 1 XMM XMM . E 5 SO4 A 1 304 1 SO4 SO4 . F 6 CD A 1 305 1 CD CD . G 6 CD A 1 306 2 CD CD . H 7 GOL A 1 307 1 GOL GOL . I 7 GOL A 1 308 2 GOL GOL . J 7 GOL A 1 309 3 GOL GOL . K 8 HOH A 1 401 1 HOH HOH . K 8 HOH A 2 402 2 HOH HOH . K 8 HOH A 3 403 3 HOH HOH . K 8 HOH A 4 404 4 HOH HOH . K 8 HOH A 5 405 5 HOH HOH . K 8 HOH A 6 406 6 HOH HOH . K 8 HOH A 7 407 7 HOH HOH . K 8 HOH A 8 408 8 HOH HOH . K 8 HOH A 9 409 9 HOH HOH . K 8 HOH A 10 410 10 HOH HOH . K 8 HOH A 11 411 11 HOH HOH . K 8 HOH A 12 412 12 HOH HOH . K 8 HOH A 13 413 13 HOH HOH . K 8 HOH A 14 414 14 HOH HOH . K 8 HOH A 15 415 15 HOH HOH . K 8 HOH A 16 416 16 HOH HOH . K 8 HOH A 17 417 17 HOH HOH . K 8 HOH A 18 418 18 HOH HOH . K 8 HOH A 19 419 19 HOH HOH . K 8 HOH A 20 420 20 HOH HOH . K 8 HOH A 21 421 21 HOH HOH . K 8 HOH A 22 422 22 HOH HOH . K 8 HOH A 23 423 23 HOH HOH . K 8 HOH A 24 424 24 HOH HOH . K 8 HOH A 25 425 25 HOH HOH . K 8 HOH A 26 426 26 HOH HOH . K 8 HOH A 27 427 27 HOH HOH . K 8 HOH A 28 428 28 HOH HOH . K 8 HOH A 29 429 29 HOH HOH . K 8 HOH A 30 430 30 HOH HOH . K 8 HOH A 31 431 31 HOH HOH . K 8 HOH A 32 432 32 HOH HOH . K 8 HOH A 33 433 33 HOH HOH . K 8 HOH A 34 434 34 HOH HOH . K 8 HOH A 35 435 35 HOH HOH . K 8 HOH A 36 436 36 HOH HOH . K 8 HOH A 37 437 37 HOH HOH . K 8 HOH A 38 438 38 HOH HOH . K 8 HOH A 39 439 39 HOH HOH . K 8 HOH A 40 440 40 HOH HOH . K 8 HOH A 41 441 41 HOH HOH . K 8 HOH A 42 442 42 HOH HOH . K 8 HOH A 43 443 43 HOH HOH . K 8 HOH A 44 444 44 HOH HOH . K 8 HOH A 45 445 45 HOH HOH . K 8 HOH A 46 446 46 HOH HOH . K 8 HOH A 47 447 47 HOH HOH . K 8 HOH A 48 448 48 HOH HOH . K 8 HOH A 49 449 49 HOH HOH . K 8 HOH A 50 450 50 HOH HOH . K 8 HOH A 51 451 51 HOH HOH . K 8 HOH A 52 452 52 HOH HOH . K 8 HOH A 53 453 53 HOH HOH . K 8 HOH A 54 454 54 HOH HOH . K 8 HOH A 55 455 55 HOH HOH . K 8 HOH A 56 456 56 HOH HOH . K 8 HOH A 57 457 57 HOH HOH . K 8 HOH A 58 458 58 HOH HOH . K 8 HOH A 59 459 59 HOH HOH . K 8 HOH A 60 460 60 HOH HOH . K 8 HOH A 61 461 61 HOH HOH . K 8 HOH A 62 462 62 HOH HOH . K 8 HOH A 63 463 63 HOH HOH . K 8 HOH A 64 464 64 HOH HOH . K 8 HOH A 65 465 65 HOH HOH . K 8 HOH A 66 466 66 HOH HOH . K 8 HOH A 67 467 67 HOH HOH . K 8 HOH A 68 468 68 HOH HOH . K 8 HOH A 69 469 69 HOH HOH . K 8 HOH A 70 470 70 HOH HOH . K 8 HOH A 71 471 71 HOH HOH . K 8 HOH A 72 472 72 HOH HOH . K 8 HOH A 73 473 73 HOH HOH . K 8 HOH A 74 474 74 HOH HOH . K 8 HOH A 75 475 75 HOH HOH . K 8 HOH A 76 476 76 HOH HOH . K 8 HOH A 77 477 77 HOH HOH . K 8 HOH A 78 478 78 HOH HOH . K 8 HOH A 79 479 79 HOH HOH . K 8 HOH A 80 480 80 HOH HOH . K 8 HOH A 81 481 81 HOH HOH . K 8 HOH A 82 482 82 HOH HOH . K 8 HOH A 83 483 83 HOH HOH . K 8 HOH A 84 484 84 HOH HOH . K 8 HOH A 85 485 85 HOH HOH . K 8 HOH A 86 486 86 HOH HOH . K 8 HOH A 87 487 87 HOH HOH . K 8 HOH A 88 488 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 7 -1.667 -26.765 11.034 1 36.67 ? C1 GOL 308 A 1 HETATM 2 O O1 GOL . . . I 7 -2.724 -26.396 10.213 1 34.49 ? O1 GOL 308 A 1 HETATM 3 C C2 GOL . . . I 7 -0.479 -26.884 10.105 1 37.98 ? C2 GOL 308 A 1 HETATM 4 O O2 GOL . . . I 7 0.097 -28.164 10.237 1 39.21 ? O2 GOL 308 A 1 HETATM 5 C C3 GOL . . . I 7 -1.017 -26.703 8.705 1 36.86 ? C3 GOL 308 A 1 HETATM 6 O O3 GOL . . . I 7 0.004 -26.289 7.838 1 36.77 ? O3 GOL 308 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #